Details for gene set V$FREAC3

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_SCID.phenotype_ATM_minus_versus_SCID.cls #ATM_minus_versus_SCID
Phenotype	phenotype_ATM_minus_versus_SCID.cls#ATM_minus_versus_SCID
Upregulated in class	SCID
GeneSet	V$FREAC3_01
Enrichment Score (ES)	-0.31269994
Normalized Enrichment Score (NES)	-1.3331331
Nominal p-value	0.023376623
FDR q-value	0.7589465
FWER p-Value	0.999

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LAMB3	1417812_a_at	962	2.015	-0.0292	No
2	GFRA1	1421973_at 1439015_at 1450440_at	1046	1.935	-0.0186	No
3	MMP11	1417234_at	1193	1.806	-0.0119	No
4	TNFRSF19	1415921_a_at 1425212_a_at 1427600_at 1445949_at 1448147_at	1295	1.739	-0.0036	No
5	HOXA9	1421579_at 1455626_at	1454	1.658	0.0015	No
6	FGB	1428079_at	1523	1.621	0.0104	No
7	DVL2	1417207_at 1448616_at	1555	1.596	0.0209	No
8	CD68	1449164_at	1595	1.563	0.0307	No
9	MRPS18B	1451164_a_at	1616	1.552	0.0413	No
10	AGPAT4	1428336_at 1436640_x_at	1751	1.479	0.0462	No
11	PRPF39	1428171_at 1428172_at 1452688_at	1764	1.472	0.0566	No
12	ICAM5	1418619_at	2003	1.352	0.0557	No
13	SLITRK6	1437231_at	2022	1.345	0.0649	No
14	TIMM9	1428010_at 1449886_a_at	2026	1.343	0.0747	No
15	NEDD4	1421955_a_at 1444044_at 1450431_a_at 1451109_a_at	2046	1.334	0.0838	No
16	EGR2	1427682_a_at 1427683_at	2191	1.273	0.0866	No
17	LMO4	1420981_a_at 1439651_at	2192	1.273	0.0961	No
18	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	2227	1.255	0.1039	No
19	MPP6	1440396_at 1440490_at 1449348_at	2247	1.246	0.1123	No
20	CDKN1A	1421679_a_at 1424638_at	2438	1.175	0.1123	No
21	PURA	1420628_at 1438219_at 1449934_at 1453783_at 1456898_at	2450	1.170	0.1205	No
22	BRUNOL4	1426929_at 1426930_at 1452240_at 1458475_at	2589	1.129	0.1225	No
23	NEUROD2	1444362_at	2679	1.105	0.1267	No
24	VAX1	1421774_at	3032	1.017	0.1180	No
25	FSTL1	1416221_at 1448259_at	3050	1.013	0.1248	No
26	C1QTNF6	1431856_a_at	3217	0.984	0.1245	No
27	SESTD1	1429114_at 1455549_at	3309	0.963	0.1275	No
28	TRIM8	1418577_at 1427593_at 1438679_at 1460237_at	3622	0.893	0.1198	No
29	NRG1	1456524_at	4109	0.798	0.1034	No
30	BRMS1	1417897_at 1426129_at	4353	0.755	0.0978	No
31	AP4M1	1418846_at	4377	0.751	0.1024	No
32	OTP	1422285_at	4511	0.723	0.1016	No
33	MITF	1422025_at 1455214_at	4755	0.682	0.0955	No
34	ZFHX1B	1422748_at 1434298_at 1442393_at 1445518_at 1454200_at 1456389_at	4852	0.666	0.0961	No
35	CREBL2	1435085_at 1442738_at	5083	0.627	0.0902	No
36	ARTN	1432032_a_at	5212	0.605	0.0888	No
37	NEUROG1	1438551_at 1450836_at	5295	0.594	0.0895	No
38	RPN2	1418896_a_at	5354	0.587	0.0912	No
39	LRP3	1436083_at	5470	0.569	0.0901	No
40	NTRK3	1422329_a_at 1425070_at 1425071_s_at 1426003_at 1433825_at 1443970_at 1455917_at	5676	0.544	0.0847	No
41	GCG	1425952_a_at	5958	0.507	0.0756	No
42	BCL11B	1440137_at 1441762_at 1450339_a_at	5997	0.502	0.0776	No
43	NOG	1422300_at	6070	0.494	0.0779	No
44	BAMBI	1423753_at	6155	0.482	0.0777	No
45	IDH1	1419821_s_at 1422433_s_at	6159	0.482	0.0811	No
46	EFNA5	1421796_a_at 1436866_at 1440052_at 1446383_at 1451930_at	6203	0.477	0.0827	No
47	ATOH8	1426418_at	6387	0.453	0.0776	No
48	SCG2	1450708_at	6420	0.450	0.0795	No
49	GSH1	1450002_at	6719	0.417	0.0689	No
50	LHX9	1419324_at 1431598_a_at 1441313_x_at	7011	0.385	0.0584	No
51	NAV3	1459440_at	7081	0.377	0.0581	No
52	ZFP28	1427587_at 1439503_at 1439504_s_at	7114	0.374	0.0594	No
53	PRICKLE2	1428808_at	7163	0.368	0.0599	No
54	GRIK3	1427709_at	7269	0.356	0.0577	No
55	MYL1	1452651_a_at	7591	0.323	0.0454	No
56	KCTD4	1420537_at 1441801_at	7766	0.307	0.0397	No
57	IGSF4	1417376_a_at 1417377_at 1417378_at 1431611_a_at	7883	0.297	0.0365	No
58	AKT1S1	1428158_at 1437736_at 1452684_at	7976	0.289	0.0345	No
59	XPO7	1415682_at 1435814_at 1439411_a_at 1442836_at 1446826_at	8038	0.284	0.0338	No
60	ARID4A	1436191_at 1438464_at 1456420_at	8177	0.269	0.0294	No
61	SPDEF	1450220_a_at	8384	0.246	0.0218	No
62	PPP2R2B	1426621_a_at	8567	0.229	0.0151	No
63	TCERG1L	1431835_at	8776	0.210	0.0071	No
64	TRPC4	1423579_a_at 1446366_at 1451033_a_at	8779	0.210	0.0086	No
65	PHF15	1430081_at 1455345_at	8828	0.205	0.0079	No
66	LRP2	1427133_s_at 1427621_at 1445901_at 1452320_at	8994	0.190	0.0018	No
67	SCRN3	1426916_at 1426917_s_at 1436573_at	9405	0.153	-0.0159	No
68	HOXC8	1452412_at	9433	0.151	-0.0161	No
69	RASSF6	1429262_at	9647	0.131	-0.0249	No
70	A2BP1	1418314_a_at 1438217_at 1447735_x_at 1455358_at 1456921_at	9663	0.130	-0.0246	No
71	ZHX2	1455210_at	9967	0.104	-0.0377	No
72	HOXC5	1439885_at 1450832_at 1456301_at	10023	0.099	-0.0395	No
73	DCX	1418139_at 1418140_at 1418141_at 1448974_at	10061	0.097	-0.0405	No
74	PLUNC	1420347_at	10072	0.096	-0.0403	No
75	HOXA11	1420414_at	10132	0.092	-0.0423	No
76	GNAO1	1421152_a_at 1448031_at 1460383_at	10395	0.069	-0.0538	No
77	RAB3IP	1434306_at 1436103_at	10426	0.066	-0.0547	No
78	PELI2	1419006_s_at 1436966_at 1437181_at	10476	0.062	-0.0565	No
79	EIF4EBP2	1417084_at 1436158_at 1437733_at 1455575_at 1456613_at	10524	0.058	-0.0582	No
80	CHN1	1420545_a_at 1445691_at	10585	0.053	-0.0606	No
81	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	10639	0.048	-0.0627	No
82	FGF9	1420795_at 1438718_at 1445258_at	10930	0.025	-0.0758	No
83	ETV4	1423232_at 1443381_at	11003	0.016	-0.0790	No
84	OTX2	1425926_a_at	11014	0.015	-0.0793	No
85	PCF11	1427159_at 1427160_at 1428724_at 1456489_at	11052	0.012	-0.0810	No
86	SLC38A3	1418706_at 1446013_at	11067	0.011	-0.0815	No
87	LHX5	1420348_at	11114	0.007	-0.0836	No
88	TBXAS1	1416827_at	11334	-0.013	-0.0935	No
89	ETV1	1422607_at 1445314_at 1450684_at	11765	-0.052	-0.1129	No
90	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	11872	-0.061	-0.1173	No
91	POU3F3	1422331_at 1435197_at	12119	-0.083	-0.1280	No
92	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	12170	-0.087	-0.1297	No
93	ESRRG	1421747_at 1455267_at 1457896_at	12225	-0.091	-0.1315	No
94	TCF15	1449592_at	12280	-0.096	-0.1332	No
95	HOXA13	1422336_at	12308	-0.099	-0.1337	No
96	LGI1	1423183_at 1435851_at	12486	-0.116	-0.1410	No
97	GRB7	1448227_at	12641	-0.129	-0.1471	No
98	HOXA10	1431475_a_at 1446408_at	12815	-0.146	-0.1540	No
99	MRGPRF	1425894_at	12956	-0.160	-0.1592	No
100	CDKN1C	1417649_at	13002	-0.164	-0.1601	No
101	PHOX2B	1422232_at 1455907_x_at	13035	-0.167	-0.1603	No
102	NTN1	1422987_at 1454974_at	13041	-0.168	-0.1593	No
103	BNC2	1438861_at 1440593_at 1459132_at	13306	-0.190	-0.1700	No
104	PAPPA	1427633_a_at 1432591_at 1432592_at 1459375_at	13342	-0.194	-0.1702	No
105	DTNA	1419223_a_at 1425292_at 1426066_a_at 1427588_a_at 1429768_at 1447280_at 1456069_at 1458908_at	13477	-0.206	-0.1748	No
106	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	13541	-0.212	-0.1761	No
107	FOSL2	1422931_at	13578	-0.215	-0.1762	No
108	GPR1	1460123_at	13582	-0.215	-0.1747	No
109	TBX4	1426321_at 1456033_at	13748	-0.230	-0.1806	No
110	WHSC1L1	1442085_at 1447931_at 1455668_at 1457630_at 1457793_a_at 1457794_at 1459907_a_at	13780	-0.233	-0.1803	No
111	BCL11A	1419406_a_at 1426552_a_at 1446293_at 1447334_at 1447335_x_at 1453814_at 1456632_at	14053	-0.262	-0.1908	No
112	MRVI1	1422245_a_at 1459665_s_at	14111	-0.268	-0.1915	No
113	ITGB6	1422983_at 1432281_a_at	14173	-0.274	-0.1922	No
114	HOXA2	1419602_at	14617	-0.320	-0.2102	No
115	RGS8	1453060_at	14640	-0.323	-0.2088	No
116	SDK2	1430425_at 1457333_at	14758	-0.336	-0.2117	No
117	EFEMP1	1427183_at	14837	-0.345	-0.2127	No
118	IMPDH1	1423239_at	15085	-0.372	-0.2213	No
119	MAP4K5	1427083_a_at 1427084_a_at 1427376_a_at 1440059_at 1445426_at 1446348_at 1447204_at	15205	-0.385	-0.2239	No
120	SLC35A2	1422827_x_at 1432533_a_at 1436664_a_at 1439433_a_at 1453858_at 1457024_x_at	15298	-0.395	-0.2252	No
121	FAP	1417552_at	15498	-0.417	-0.2312	No
122	LCP2	1418641_at 1418642_at	15763	-0.450	-0.2400	No
123	MAFF	1418936_at	15889	-0.464	-0.2423	No
124	PRDM1	1420425_at 1444997_at	15919	-0.467	-0.2402	No
125	ZIC2	1421301_at	16150	-0.499	-0.2470	No
126	PCSK1	1421396_at	16260	-0.513	-0.2482	No
127	LMO3	1455754_at	16305	-0.519	-0.2464	No
128	TIAM1	1418057_at 1444373_at 1453887_a_at	16453	-0.538	-0.2491	No
129	EYA1	1421727_at 1443117_at 1457424_at	16689	-0.575	-0.2556	No
130	SH3GL3	1432103_a_at	17135	-0.644	-0.2713	No
131	LUC7L2	1423251_at 1427087_at 1436165_at 1436766_at 1436767_at 1437761_at 1458423_at	17696	-0.737	-0.2915	No
132	SQSTM1	1440076_at 1442237_at 1444021_at 1450957_a_at	17923	-0.785	-0.2961	No
133	PIP5K2A	1419279_at 1419280_at 1420109_at 1442310_at 1444159_at 1449404_at 1449736_at	18250	-0.862	-0.3047	No
134	SUPT3H	1434963_at	18262	-0.864	-0.2987	No
135	CPNE1	1433439_at	18567	-0.937	-0.3057	Yes
136	THRA	1426997_at 1443952_at 1454675_at	18609	-0.946	-0.3006	Yes
137	ANGPT2	1422415_at 1446903_at 1448831_at	18675	-0.960	-0.2964	Yes
138	PRKCBP1	1426614_at 1429415_at 1445827_at 1456143_at 1458617_at	18686	-0.962	-0.2897	Yes
139	POU2F1	1419716_a_at 1427695_a_at 1427835_at	18770	-0.978	-0.2863	Yes
140	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	18792	-0.982	-0.2799	Yes
141	DCN	1441506_at 1449368_at	18800	-0.983	-0.2729	Yes
142	TGFB3	1417455_at	18927	-1.005	-0.2712	Yes
143	BUB3	1416815_s_at 1448058_s_at 1448473_at 1459104_at 1459918_at	18969	-1.011	-0.2656	Yes
144	TCF7L2	1425229_a_at 1426639_a_at 1429427_s_at 1429428_at 1441756_at 1446452_at 1447071_at	19006	-1.017	-0.2597	Yes
145	AKT2	1421324_a_at 1424480_s_at 1455703_at	19079	-1.028	-0.2553	Yes
146	TBC1D17	1423659_a_at	19126	-1.037	-0.2498	Yes
147	UTX	1427235_at 1427672_a_at 1440524_at 1441201_at 1445198_at 1446234_at 1446278_at	19152	-1.041	-0.2432	Yes
148	CDK6	1435338_at 1440040_at 1455287_at 1460291_at	19191	-1.049	-0.2371	Yes
149	SIM1	1420736_at 1449967_at	19208	-1.054	-0.2300	Yes
150	TIAL1	1421148_a_at 1426352_s_at 1446713_at 1452821_at 1455675_a_at 1455676_x_at	19273	-1.071	-0.2250	Yes
151	TTR	1451580_a_at 1454608_x_at 1455913_x_at 1459737_s_at	19283	-1.074	-0.2174	Yes
152	MBNL2	1433754_at 1436858_at 1446475_at 1455827_at 1457237_at 1457477_at	19309	-1.081	-0.2105	Yes
153	VPS45A	1418143_at	19456	-1.120	-0.2089	Yes
154	ID2	1422537_a_at 1435176_a_at 1453596_at	19677	-1.190	-0.2101	Yes
155	LEF1	1421299_a_at 1436398_at 1440760_at	19770	-1.222	-0.2053	Yes
156	LRAT	1421345_at 1444487_at	19829	-1.244	-0.1987	Yes
157	TRAF3	1418587_at 1444758_at 1449149_at	19940	-1.284	-0.1942	Yes
158	TGFB1	1420653_at 1445360_at	20034	-1.334	-0.1885	Yes
159	ANKRD28	1434630_at 1454801_at	20035	-1.334	-0.1786	Yes
160	ARID1B	1439321_at 1455979_at 1456952_at	20075	-1.356	-0.1703	Yes
161	HOXA3	1427433_s_at 1441070_at 1452421_at	20101	-1.368	-0.1613	Yes
162	CNNM3	1420480_at 1420481_at 1420482_at 1420483_at 1441544_at 1458330_x_at	20232	-1.425	-0.1566	Yes
163	HOXA4	1420226_x_at 1427354_at	20281	-1.452	-0.1480	Yes
164	RKHD3	1437152_at	20320	-1.473	-0.1388	Yes
165	POGZ	1434650_at 1454827_at 1455046_a_at 1457748_at	20345	-1.485	-0.1289	Yes
166	ATP5G2	1415980_at 1456128_at	20395	-1.511	-0.1199	Yes
167	ULK1	1416504_at 1448370_at	20413	-1.519	-0.1094	Yes
168	HERPUD1	1435626_a_at 1448185_at	20447	-1.536	-0.0995	Yes
169	TRERF1	1444654_at	20616	-1.639	-0.0950	Yes
170	DLGAP4	1426465_at 1455548_at	20653	-1.659	-0.0843	Yes
171	PAK1	1420979_at 1420980_at 1450070_s_at 1459029_at	20746	-1.720	-0.0757	Yes
172	EMP3	1417104_at	20892	-1.838	-0.0687	Yes
173	PPP1R10	1426726_at 1426727_s_at 1430560_at	21011	-1.929	-0.0598	Yes
174	BCL9	1445859_at 1446767_at 1451574_at 1455565_at	21400	-2.322	-0.0603	Yes
175	PPP1CB	1426205_at 1431328_at 1433540_x_at 1456462_x_at	21886	-5.592	-0.0410	Yes
176	PPIL5	1427506_at 1436922_at 1452458_s_at	21894	-5.818	0.0019	Yes