GO_Human
ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN//goa_human.gaf.gz
Last-Modified: Tue, 28 Jul 2026 15:31:43 GMT
========
GO_OBO_FILE
https://current.geneontology.org/ontology/go.obo
========
Human_phenotype_OBO_FILE
https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo
========
Human_Phenotype
https://github.com/obophenotype/human-phenotype-ontology/releases/latest/download/genes_to_phenotype.txt
========
IOB
IOB pathways were recieved from IOB in July 2011, validated and autofixed using the biopax validator.
=====================
KEGG
Kegg was downloaded from the previously public ftp site on July 1, 2011
==========================
MSigdb hallmark version 2026.1 -  Hallmark gene sets summarize and represent specific well-defined biological 
	states or processes and display coherent expression. These gene sets were generated by a 
	computational methodology based on identifying gene set overlaps and retaining genes that 
	display coordinate expression.
Human MSigDB v2026.1.Hs updated March 2026 
===============
MSigdb version 2026.1 - March 2026
Msigdb -c3 - mirs
=============
MSigdb c2 version v2026.1 - canonical pathway set (cp) from pid and biocarta
Human MSigDB v2026.1.Hs updated March 2026
==============
MSigdb version 2026.1 - March 2026
msigdb c3 - transcription factors 
===============
Panther
https://data.pantherdb.org/ftp/pathway/current_release//BioPAX.tar.gz
Last-Modified: Thu, 20 Jun 2024 17:45:57 GMT
========
PFOCR
https://data.wikipathways.org/pfocr/current//pfocr-20250701-gmt-Homo_sapiens.gmt
========
Reactome
https://download.reactome.org//97/biopax.zip
========
Loading GMT File...
cytoscape.CytoscapeInit[INFO]: CytoscapeInit static initialization
converting 25639 ids in total
200
{"jobId":"z9Ji8esyGK"}
z9Ji8esyGK
200
{"jobId":"hZ75c0cZ7G"}
hZ75c0cZ7G
200
{"jobId":"eck4v1oohS"}
eck4v1oohS
200
{"jobId":"jMnyOjAmRF"}
jMnyOjAmRF
200
{"jobId":"sZN7485zeV"}
sZN7485zeV
200
{"jobId":"Ycu0UeI9J1"}
Ycu0UeI9J1
200
{"jobId":"9f1lZwDkEj"}
9f1lZwDkEj
200
{"jobId":"7RZW6i7hAu"}
7RZW6i7hAu
200
{"jobId":"tzz0dNOT4l"}
tzz0dNOT4l
200
{"jobId":"9CLbDqIhjf"}
9CLbDqIhjf
200
{"jobId":"2INZZxxhkG"}
2INZZxxhkG
200
{"jobId":"v1Bju7S005"}
v1Bju7S005
200
{"jobId":"kPoqkmcgxP"}
kPoqkmcgxP
200
{"jobId":"hBCNF5rLnX"}
hBCNF5rLnX
200
{"jobId":"pTAHvqYzR8"}
pTAHvqYzR8
200
{"jobId":"9NNs43gRZk"}
9NNs43gRZk
200
{"jobId":"bwgiM9QYEH"}
bwgiM9QYEH
200
{"jobId":"MXSncVBUfI"}
MXSncVBUfI
200
{"jobId":"nM0ZyH0Kmk"}
nM0ZyH0Kmk
200
{"jobId":"oyoMDTUdkI"}
oyoMDTUdkI
200
{"jobId":"3UcSthusdk"}
3UcSthusdk
200
{"jobId":"8WEDc1CiEK"}
8WEDc1CiEK
200
{"jobId":"xqkERiS8gn"}
xqkERiS8gn
200
{"jobId":"bxX6SWPvKd"}
bxX6SWPvKd
200
{"jobId":"hfxJFqOpH0"}
hfxJFqOpH0
200
{"jobId":"7oMQqGKUCM"}
7oMQqGKUCM
 There are 9401 that are still not found
converting 16196 ids in total
200
{"jobId":"drXlLdyGYE"}
drXlLdyGYE
200
{"jobId":"lJYUAhweoK"}
lJYUAhweoK
200
{"jobId":"gYUgeJQPWg"}
gYUgeJQPWg
200
{"jobId":"gDirUbbq6t"}
gDirUbbq6t
200
{"jobId":"czSPAgEhbC"}
czSPAgEhbC
200
{"jobId":"aRHYrWgJio"}
aRHYrWgJio
200
{"jobId":"eVnt06ri8f"}
eVnt06ri8f
200
{"jobId":"pAMm17G49J"}
pAMm17G49J
200
{"jobId":"oEW0GPfy2M"}
oEW0GPfy2M
200
{"jobId":"ewp8LH0Mr9"}
ewp8LH0Mr9
200
{"jobId":"aHJ8lgJ1bZ"}
aHJ8lgJ1bZ
200
{"jobId":"8L8OCsz0vJ"}
8L8OCsz0vJ
200
{"jobId":"1SCLYq5zYj"}
1SCLYq5zYj
200
{"jobId":"3uRCeDO0VB"}
3uRCeDO0VB
200
{"jobId":"78b5G6v445"}
78b5G6v445
200
{"jobId":"qc5WKeFJhk"}
qc5WKeFJhk
200
{"jobId":"wN3P3so5Eu"}
wN3P3so5Eu
There are multiple ids in line:SBP 1b(we were trying to convert Q769H0)
 There are 2044 that are still not found
Loading GMT File...
cytoscape.CytoscapeInit[INFO]: CytoscapeInit static initialization
converting 25639 ids in total
200
{"jobId":"z9Ji8esyGK"}
z9Ji8esyGK
200
{"jobId":"hZ75c0cZ7G"}
hZ75c0cZ7G
200
{"jobId":"eck4v1oohS"}
eck4v1oohS
200
{"jobId":"jMnyOjAmRF"}
jMnyOjAmRF
200
{"jobId":"sZN7485zeV"}
sZN7485zeV
200
{"jobId":"Ycu0UeI9J1"}
Ycu0UeI9J1
200
{"jobId":"9f1lZwDkEj"}
9f1lZwDkEj
200
{"jobId":"7RZW6i7hAu"}
7RZW6i7hAu
200
{"jobId":"tzz0dNOT4l"}
tzz0dNOT4l
200
{"jobId":"9CLbDqIhjf"}
9CLbDqIhjf
200
{"jobId":"2INZZxxhkG"}
2INZZxxhkG
200
{"jobId":"v1Bju7S005"}
v1Bju7S005
200
{"jobId":"kPoqkmcgxP"}
kPoqkmcgxP
200
{"jobId":"hBCNF5rLnX"}
hBCNF5rLnX
200
{"jobId":"pTAHvqYzR8"}
pTAHvqYzR8
200
{"jobId":"9NNs43gRZk"}
9NNs43gRZk
200
{"jobId":"bwgiM9QYEH"}
bwgiM9QYEH
200
{"jobId":"MXSncVBUfI"}
MXSncVBUfI
200
{"jobId":"nM0ZyH0Kmk"}
nM0ZyH0Kmk
200
{"jobId":"oyoMDTUdkI"}
oyoMDTUdkI
200
{"jobId":"3UcSthusdk"}
3UcSthusdk
200
{"jobId":"8WEDc1CiEK"}
8WEDc1CiEK
200
{"jobId":"xqkERiS8gn"}
xqkERiS8gn
200
{"jobId":"bxX6SWPvKd"}
bxX6SWPvKd
200
{"jobId":"hfxJFqOpH0"}
hfxJFqOpH0
200
{"jobId":"7oMQqGKUCM"}
7oMQqGKUCM
 There are 9401 that are still not found
converting 16196 ids in total
200
{"jobId":"bElcvqyYRd"}
bElcvqyYRd
200
{"jobId":"1TzBlGRWaD"}
1TzBlGRWaD
200
{"jobId":"qU0FBhloOV"}
qU0FBhloOV
200
{"jobId":"sNBuX3yKCH"}
sNBuX3yKCH
200
{"jobId":"1AG0Sx6hBv"}
1AG0Sx6hBv
200
{"jobId":"fGmpWxFY5C"}
fGmpWxFY5C
200
{"jobId":"epNzS3tIU9"}
epNzS3tIU9
200
{"jobId":"seqKqvVQ8V"}
seqKqvVQ8V
200
{"jobId":"6TMdF0Auf8"}
6TMdF0Auf8
200
{"jobId":"tN0FgfVlRQ"}
tN0FgfVlRQ
200
{"jobId":"xT43iVt6BK"}
xT43iVt6BK
200
{"jobId":"adsq0ul9Lx"}
adsq0ul9Lx
200
{"jobId":"lqc0kAeGAH"}
lqc0kAeGAH
200
{"jobId":"CFsGrnxwdJ"}
CFsGrnxwdJ
200
{"jobId":"o6Ct4sfdSw"}
o6Ct4sfdSw
200
{"jobId":"yRaYwi4mJM"}
yRaYwi4mJM
200
{"jobId":"1WltRTivKQ"}
1WltRTivKQ
 There are 17 that are still not found
Loading GMT File...
cytoscape.CytoscapeInit[INFO]: CytoscapeInit static initialization
converting 25639 ids in total
200
{"jobId":"z9Ji8esyGK"}
z9Ji8esyGK
200
{"jobId":"hZ75c0cZ7G"}
hZ75c0cZ7G
200
{"jobId":"eck4v1oohS"}
eck4v1oohS
200
{"jobId":"jMnyOjAmRF"}
jMnyOjAmRF
200
{"jobId":"sZN7485zeV"}
sZN7WikiPathways
https://data.wikipathways.org/current/gmt//wikipathways-20260810-gmt-Homo_sapiens.gmt
========