Details for gene set V$FREAC4

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB_repos
Phenotype	phenotype_transDMproB_versus_transDMpreB.cls#transDMproB_versus_transDMpreB_repos
Upregulated in class	transDMproB
GeneSet	V$FREAC4_01
Enrichment Score (ES)	0.7550367
Normalized Enrichment Score (NES)	1.6791989
Nominal p-value	0.0
FDR q-value	0.07046526
FWER p-Value	0.049

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	17260	1	6.359	0.2055	Yes
2	GFRA1	9015	28	4.130	0.3376	Yes
3	CDKN1A	4511 8729	49	3.556	0.4514	Yes
4	LEF1	1860 15420	133	2.410	0.5248	Yes
5	ETHE1	18347	334	1.654	0.5675	Yes
6	TCF7L2	10048 5646	354	1.605	0.6184	Yes
7	UBE2H	5823 5822	402	1.542	0.6656	Yes
8	DUSP1	23061	416	1.523	0.7142	Yes
9	MBNL2	21932	484	1.376	0.7550	Yes
10	PLS3	8332	1145	0.620	0.7394	No
11	ZFX	5984	1438	0.487	0.7394	No
12	CTCF	18490	1551	0.438	0.7475	No
13	KBTBD2	17137	1731	0.368	0.7498	No
14	ZADH2	23501	2250	0.217	0.7288	No
15	ULK1	16436	2912	0.099	0.6963	No
16	TRPS1	8195	2925	0.098	0.6988	No
17	HEPH	24288 2623 2635 2568 2652	3243	0.068	0.6839	No
18	TLE3	5767 19416	3343	0.060	0.6805	No
19	NCDN	15756 2487 6471	3623	0.043	0.6668	No
20	EYA1	4695 4061	3955	0.030	0.6500	No
21	OTOP3	20599	4178	0.024	0.6387	No
22	PELI2	8217	4180	0.024	0.6395	No
23	FOXB1	12254 19069	4427	0.018	0.6268	No
24	TCF1	16416	4523	0.017	0.6222	No
25	MSC	13998	4626	0.015	0.6172	No
26	CAMK1D	5977 2948	4690	0.015	0.6143	No
27	CALD1	4273 8463	5005	0.012	0.5977	No
28	OTX1	20517	5019	0.012	0.5974	No
29	HOXA11	17146	5351	0.009	0.5798	No
30	FGF9	8966	5506	0.009	0.5718	No
31	FOXD3	9088	5849	0.007	0.5535	No
32	VIT	23155	5867	0.007	0.5528	No
33	ROR1	6472	5871	0.007	0.5529	No
34	SYT10	22157	6001	0.006	0.5461	No
35	SHOX2	1802 5432	6163	0.006	0.5376	No
36	LOX	23438	6462	0.005	0.5217	No
37	PHEX	24024	6685	0.004	0.5098	No
38	PNRC1	15925	6825	0.004	0.5024	No
39	GABRR1	16250	6846	0.003	0.5014	No
40	PITX2	15424 1878	7147	0.003	0.4853	No
41	TLX1	23839	7241	0.002	0.4804	No
42	HOXD9	14982	7822	0.001	0.4491	No
43	SLC24A2	8020 13326 8021	8019	0.000	0.4385	No
44	NNAT	2764 5180	8129	0.000	0.4327	No
45	ODZ1	24168	8484	-0.001	0.4136	No
46	NR4A1	9099	8658	-0.001	0.4043	No
47	PURA	9670	8758	-0.001	0.3990	No
48	PER2	3940 13881	8769	-0.001	0.3985	No
49	MYH2	20838	8935	-0.002	0.3896	No
50	SPRY4	23448	9072	-0.002	0.3823	No
51	NEDD4	19384 3101	9119	-0.002	0.3799	No
52	IBSP	16775	9762	-0.004	0.3454	No
53	UBXD3	15701	9779	-0.004	0.3446	No
54	SEMA5B	9801 22777	10084	-0.004	0.3284	No
55	HOXC6	22339 2302	10191	-0.005	0.3228	No
56	CD109	6174 10656 19369	10221	-0.005	0.3214	No
57	PRDM1	19775 3337	10270	-0.005	0.3190	No
58	OSR2	22492	10389	-0.005	0.3128	No
59	PLUNC	9593	10576	-0.006	0.3029	No
60	EVX1	17442	10982	-0.007	0.2813	No
61	SLC34A3	14664	11050	-0.007	0.2779	No
62	IER5	13802	11344	-0.008	0.2624	No
63	CITED2	5118 14477	12067	-0.011	0.2237	No
64	PTHR1	5318 18985	12112	-0.012	0.2217	No
65	RARG	22113	12219	-0.012	0.2164	No
66	CLDN18	19028	12242	-0.012	0.2156	No
67	ADRB1	4357	12463	-0.014	0.2042	No
68	COLEC12	23624 8946	12538	-0.014	0.2007	No
69	BTBD3	10457 2975 6007 6006	12821	-0.016	0.1860	No
70	PDCD1LG2	23892	12975	-0.017	0.1783	No
71	HR	3622 9119	13059	-0.018	0.1744	No
72	KLF12	4960 2637 21732 9228	13156	-0.019	0.1698	No
73	TNMD	24260	13256	-0.020	0.1651	No
74	ERG	1686 8915	13281	-0.020	0.1644	No
75	POU3F3	14261	13339	-0.021	0.1620	No
76	TGFB3	10161	13520	-0.023	0.1530	No
77	TECTA	19159	13884	-0.028	0.1344	No
78	AP1G2	2677 21827	14069	-0.032	0.1255	No
79	ALDH1A2	19386	14170	-0.034	0.1211	No
80	FOXP2	4312 17523 8523	14370	-0.039	0.1116	No
81	IGF1	3352 9156 3409	14702	-0.048	0.0953	No
82	TBX4	5633	14830	-0.053	0.0902	No
83	FERD3L	21292	14904	-0.056	0.0880	No
84	MCC	552	15167	-0.071	0.0762	No
85	HOXC4	4864	15454	-0.090	0.0637	No
86	SIN3A	5442	15834	-0.133	0.0475	No
87	HSPG2	4884 16023	16031	-0.164	0.0422	No
88	PHTF2	16599	16203	-0.195	0.0393	No
89	TMOD3	6945	16334	-0.225	0.0395	No
90	SLC31A1	2447 16195	16667	-0.312	0.0317	No
91	TAF5L	18712	16779	-0.340	0.0367	No
92	PDE7A	9544 1788	16789	-0.343	0.0473	No
93	PUM2	2071 8161	17457	-0.602	0.0308	No
94	LMO4	15151	18004	-0.982	0.0330	No