Details for gene set V$FREAC2

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB.phenotype_transDMproB_versus_transDMpreB.cls #transDMproB_versus_transDMpreB_repos
Phenotype	phenotype_transDMproB_versus_transDMpreB.cls#transDMproB_versus_transDMpreB_repos
Upregulated in class	transDMproB
GeneSet	V$FREAC2_01
Enrichment Score (ES)	0.6348514
Normalized Enrichment Score (NES)	1.5254483
Nominal p-value	0.0
FDR q-value	0.08136297
FWER p-Value	0.689

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	17260	1	6.359	0.1015	Yes
2	CDKN1A	4511 8729	49	3.556	0.1557	Yes
3	MARCKS	9331	69	3.057	0.2035	Yes
4	UHRF2	3731 4262 8452 23887	99	2.667	0.2446	Yes
5	SEPP1	22524	116	2.535	0.2842	Yes
6	TIAM1	22547	127	2.451	0.3228	Yes
7	KLF3	4961	257	1.890	0.3460	Yes
8	NDRG1	22276	305	1.727	0.3710	Yes
9	UBE2H	5823 5822	402	1.542	0.3904	Yes
10	DUSP1	23061	416	1.523	0.4140	Yes
11	MBNL2	21932	484	1.376	0.4324	Yes
12	SQSTM1	9517	505	1.326	0.4525	Yes
13	CHD2	10847	573	1.217	0.4683	Yes
14	RAB6IP1	17676	577	1.204	0.4873	Yes
15	NFIX	9458	582	1.194	0.5062	Yes
16	ABTB1	17075	689	1.036	0.5170	Yes
17	SMAD5	21621	710	1.010	0.5320	Yes
18	BCL11A	4691	748	0.967	0.5455	Yes
19	HOXB4	20686	767	0.952	0.5597	Yes
20	PPAP2B	7503 16161	891	0.836	0.5664	Yes
21	PRKCH	21246	909	0.818	0.5785	Yes
22	UTX	10266 2574	960	0.767	0.5880	Yes
23	EXT1	22297	997	0.734	0.5978	Yes
24	CDKN1C	17546	1079	0.663	0.6040	Yes
25	TBCC	23215	1182	0.601	0.6081	Yes
26	PPM1D	20721	1315	0.540	0.6095	Yes
27	BCAS3	5314	1330	0.533	0.6173	Yes
28	EGLN1	8504 18707 4298	1367	0.516	0.6236	Yes
29	HIBADH	17144	1636	0.402	0.6155	Yes
30	KBTBD2	17137	1731	0.368	0.6162	Yes
31	AXL	17922	1779	0.353	0.6193	Yes
32	STK3	7084	1848	0.328	0.6209	Yes
33	BRIP1	20311	1888	0.315	0.6238	Yes
34	BCL9	15232	1891	0.315	0.6287	Yes
35	ETV5	22630	1903	0.314	0.6331	Yes
36	RBM4	9706 3693	1960	0.298	0.6349	Yes
37	ZADH2	23501	2250	0.217	0.6226	No
38	DNAJB12	7146	2333	0.196	0.6213	No
39	MBNL1	1921 15582	2390	0.183	0.6212	No
40	NAP1L3	24266	2732	0.125	0.6047	No
41	TCF15	14798	2767	0.118	0.6047	No
42	SH3GL3	18201	2788	0.114	0.6055	No
43	PAK1	9527	2868	0.104	0.6028	No
44	IL6ST	4920	2935	0.096	0.6008	No
45	THRA	1447 10171 1406	2947	0.096	0.6017	No
46	RPS18	1529 5397 1603	3143	0.077	0.5924	No
47	PITPNC1	7759	3222	0.069	0.5893	No
48	VPS52	23287 1622	3290	0.064	0.5866	No
49	MAP4K5	11853 21048 2101 2142	3298	0.063	0.5873	No
50	HIPK1	4851	3337	0.061	0.5862	No
51	DHRS3	15997	3601	0.044	0.5726	No
52	PHF15	20467 8050	3911	0.032	0.5564	No
53	MRVI1	17674 1020 2526	3919	0.031	0.5565	No
54	DUSP4	18632 3820	3938	0.031	0.5560	No
55	EYA1	4695 4061	3955	0.030	0.5556	No
56	ARID4A	2080 6215	3964	0.030	0.5557	No
57	CHCHD7	16280	4047	0.027	0.5517	No
58	HEBP2	19812	4067	0.027	0.5511	No
59	PELI2	8217	4180	0.024	0.5454	No
60	MMP13	19573 3007	4253	0.022	0.5418	No
61	RASD1	20424	4299	0.021	0.5397	No
62	CPNE1	11186	4352	0.020	0.5372	No
63	RORA	3019 5388	4394	0.019	0.5353	No
64	FOXB1	12254 19069	4427	0.018	0.5338	No
65	TCF1	16416	4523	0.017	0.5290	No
66	NRAP	23642	4811	0.013	0.5136	No
67	IRS4	9183 4926	4849	0.013	0.5118	No
68	NGEF	13891	4894	0.013	0.5096	No
69	CALD1	4273 8463	5005	0.012	0.5038	No
70	HOXA11	17146	5351	0.009	0.4853	No
71	MITF	17349	5365	0.009	0.4847	No
72	FGF9	8966	5506	0.009	0.4773	No
73	TRPC4	15593	5540	0.008	0.4756	No
74	VIT	23155	5867	0.007	0.4580	No
75	ROR1	6472	5871	0.007	0.4580	No
76	BMP5	19376	5941	0.007	0.4543	No
77	PLCB2	5262	6175	0.006	0.4418	No
78	KCTD15	17864	6178	0.006	0.4418	No
79	SLC38A3	13319	6240	0.005	0.4386	No
80	STOML3	15594	6264	0.005	0.4374	No
81	ADAM12	2207 8545	6278	0.005	0.4368	No
82	GREM1	14485	6777	0.004	0.4098	No
83	NFIB	15855	7045	0.003	0.3954	No
84	PITX2	15424 1878	7147	0.003	0.3899	No
85	SYT1	5565	7163	0.003	0.3892	No
86	PIK3C2A	17667	7330	0.002	0.3802	No
87	HHIP	4849	7361	0.002	0.3786	No
88	SCRN3	14984	7554	0.002	0.3682	No
89	BRUNOL6	19421	7622	0.001	0.3646	No
90	GNPNAT1	12027 7031	7688	0.001	0.3611	No
91	HOXD9	14982	7822	0.001	0.3539	No
92	AKT2	4365 4366	7867	0.001	0.3515	No
93	MRGPRF	17995	8366	-0.000	0.3245	No
94	PCF11	121	8517	-0.001	0.3164	No
95	PURA	9670	8758	-0.001	0.3034	No
96	HAND2	18615	8794	-0.001	0.3015	No
97	RBM16	11492 8387	8822	-0.001	0.3001	No
98	ACCN1	20327 1194	9191	-0.002	0.2802	No
99	ENPP2	9548	9926	-0.004	0.2404	No
100	EPHB3	22816	9969	-0.004	0.2382	No
101	EN2	16898	10072	-0.004	0.2328	No
102	CXXC5	12523	10097	-0.004	0.2315	No
103	CLDN8	22549 1747	10152	-0.005	0.2287	No
104	RASGEF1B	11515 16469	10157	-0.005	0.2285	No
105	CD109	6174 10656 19369	10221	-0.005	0.2252	No
106	FGF12	1723 22621	10236	-0.005	0.2245	No
107	EVI1	4689 8926	10259	-0.005	0.2234	No
108	PRDM1	19775 3337	10270	-0.005	0.2229	No
109	BMP2	14833	10344	-0.005	0.2191	No
110	DTNA	8870 4647 23611 1991	10399	-0.005	0.2162	No
111	GPR4	18364	10524	-0.006	0.2096	No
112	PCSK1	21600	10560	-0.006	0.2078	No
113	PLUNC	9593	10576	-0.006	0.2071	No
114	MAFF	22423 2243	10839	-0.007	0.1929	No
115	BDNF	14926 2797	10903	-0.007	0.1896	No
116	RARA	5358	10935	-0.007	0.1881	No
117	DSTN	14823	10946	-0.007	0.1876	No
118	SLC34A3	14664	11050	-0.007	0.1822	No
119	LRP5	23948 9285	11079	-0.007	0.1808	No
120	HOXC12	22343	11134	-0.008	0.1780	No
121	PCDH18	15348	11231	-0.008	0.1729	No
122	SLITRK5	21939	11387	-0.009	0.1646	No
123	EZH1	20217	11467	-0.009	0.1605	No
124	PAPPA	16190	11498	-0.009	0.1590	No
125	SYT6	13437 7042 12040	11583	-0.009	0.1546	No
126	WEE1	18127	11768	-0.010	0.1448	No
127	GPRC5C	12864	11964	-0.011	0.1344	No
128	SLC2A4	20380	12021	-0.011	0.1315	No
129	CITED2	5118 14477	12067	-0.011	0.1292	No
130	OFCC1	21486	12078	-0.012	0.1289	No
131	RAD21	22298	12173	-0.012	0.1240	No
132	NRG1	3885	12271	-0.013	0.1189	No
133	EN1	387 14155	12307	-0.013	0.1172	No
134	DOCK3	9920 5537 10751	12401	-0.013	0.1124	No
135	FOSL2	4733 8978 16878	12417	-0.013	0.1118	No
136	FGF20	18892	12484	-0.014	0.1084	No
137	NNT	3273 5181 9471 3238	12554	-0.014	0.1049	No
138	PLAG1	7148 15949 12161	12574	-0.014	0.1041	No
139	MLLT6	20678	12595	-0.015	0.1033	No
140	CGA	16246	13058	-0.018	0.0785	No
141	HR	3622 9119	13059	-0.018	0.0788	No
142	KLF12	4960 2637 21732 9228	13156	-0.019	0.0739	No
143	CD2AP	22975	13164	-0.019	0.0738	No
144	ERG	1686 8915	13281	-0.020	0.0678	No
145	POU3F3	14261	13339	-0.021	0.0651	No
146	MID1	5097 5098	13477	-0.022	0.0580	No
147	TGFB3	10161	13520	-0.023	0.0561	No
148	ELMO1	3275 8939 3202 3271 3254 3235 3164 3175 3274 3188 3293 3214 3218 3239	13585	-0.024	0.0530	No
149	SMAD1	18831 922	13589	-0.024	0.0532	No
150	AP1G2	2677 21827	14069	-0.032	0.0277	No
151	DSG4	9262 23616	14166	-0.034	0.0231	No
152	FOXP2	4312 17523 8523	14370	-0.039	0.0127	No
153	PROX1	9623	14412	-0.040	0.0111	No
154	CDX2	16289	14529	-0.043	0.0055	No
155	IGF1	3352 9156 3409	14702	-0.048	-0.0031	No
156	NFRKB	10642	14765	-0.050	-0.0056	No
157	POU3F4	347	14812	-0.052	-0.0073	No
158	TBX4	5633	14830	-0.053	-0.0074	No
159	BCL11B	7190	15046	-0.064	-0.0180	No
160	AP4M1	3499 16656	15074	-0.065	-0.0185	No
161	HABP4	12145	15136	-0.069	-0.0207	No
162	MCC	552	15167	-0.071	-0.0212	No
163	HOXC8	4865	15260	-0.077	-0.0249	No
164	HOXC4	4864	15454	-0.090	-0.0339	No
165	SIN3A	5442	15834	-0.133	-0.0524	No
166	CLPX	19403	15874	-0.140	-0.0523	No
167	DHX8	20649	15940	-0.148	-0.0534	No
168	TPP2	14257	16293	-0.217	-0.0691	No
169	STOML2	15902	16537	-0.277	-0.0778	No
170	PDE7A	9544 1788	16789	-0.343	-0.0859	No
171	E2F3	21500 8874	17131	-0.456	-0.0972	No
172	ATBF1	916 8633	17549	-0.655	-0.1093	No
173	TOB1	20703	17571	-0.670	-0.0998	No
174	MPP6	17448	17589	-0.682	-0.0898	No
175	LMO4	15151	18004	-0.982	-0.0966	No
176	FBXW7	1805 11928	18311	-1.475	-0.0896	No
177	HBP1	2048 2162 21086	18322	-1.493	-0.0663	No
178	MCM7	9372 3568	18458	-1.891	-0.0434	No
179	CPN1	23667	18582	-3.251	0.0018	No