Details for gene set V$NF1

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_LMproB.phenotype_transDMproB_versus_LMproB.cls #transDMproB_versus_LMproB
Phenotype	phenotype_transDMproB_versus_LMproB.cls#transDMproB_versus_LMproB
Upregulated in class	transDMproB
GeneSet	V$NF1_Q6
Enrichment Score (ES)	0.59481627
Normalized Enrichment Score (NES)	1.3931361
Nominal p-value	0.018181818
FDR q-value	0.6059103
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RANBP1	9692 5357	3	4.557	0.1756	Yes
2	CAMP	18990	22	2.405	0.2673	Yes
3	ALDH3B1	12569 23949	24	2.342	0.3576	Yes
4	CD63	8716	137	1.127	0.3950	Yes
5	AXUD1	18967	187	0.847	0.4250	Yes
6	MGST1	17254	218	0.726	0.4513	Yes
7	HMGN2	9095	238	0.678	0.4765	Yes
8	CALM2	8681	316	0.552	0.4936	Yes
9	H1F0	22428	478	0.426	0.5013	Yes
10	ORMDL3	12386	568	0.384	0.5113	Yes
11	MBNL2	21932	626	0.363	0.5222	Yes
12	NFKBIA	21065	629	0.362	0.5360	Yes
13	VCAM1	5851	846	0.306	0.5361	Yes
14	ZNF148	5949	893	0.297	0.5450	Yes
15	AP3S1	8604	976	0.283	0.5515	Yes
16	RBBP4	5364	978	0.283	0.5623	Yes
17	KLF13	17807	992	0.279	0.5724	Yes
18	RRAS	18256	1029	0.273	0.5810	Yes
19	SOX4	5479	1106	0.257	0.5868	Yes
20	PPM1D	20721	1259	0.230	0.5874	Yes
21	PGF	21020	1354	0.217	0.5907	Yes
22	RAPGEF5	5739 10155 21123	1426	0.208	0.5948	Yes
23	MEF2C	3204 9378	1704	0.168	0.5863	No
24	LAMB3	14007	1931	0.141	0.5794	No
25	MAN2A1	23170	2141	0.118	0.5727	No
26	MGAT4A	13977	2245	0.109	0.5713	No
27	BCL11A	4691	2248	0.109	0.5754	No
28	STARD3	20675	2327	0.101	0.5750	No
29	JUP	4937	2364	0.098	0.5769	No
30	GOT1	23670	2415	0.095	0.5778	No
31	EFNB1	24285	2748	0.072	0.5626	No
32	ARCN1	19143	2926	0.062	0.5554	No
33	ERF	4680 8914	3047	0.056	0.5510	No
34	NFIA	16172 5170	3326	0.045	0.5377	No
35	CLDN10	21935 2785 2601 2720 7188	3560	0.038	0.5265	No
36	HOXA9	17147 9109 1024	3829	0.031	0.5132	No
37	XPR1	5383	3876	0.030	0.5118	No
38	ZBTB5	15891	3882	0.030	0.5127	No
39	KRTCAP2	15541	3888	0.030	0.5136	No
40	STAT3	5525 9906	4016	0.027	0.5078	No
41	SNX15	23993 3761	4074	0.026	0.5057	No
42	TANK	2839 15006 2729	4318	0.022	0.4933	No
43	SRGAP2	13836 17045 6433 17046	4524	0.020	0.4830	No
44	NOL4	2028 11432	4532	0.020	0.4833	No
45	PRKAR2A	5287	4540	0.019	0.4837	No
46	MCAM	3109 19479	4665	0.018	0.4777	No
47	TNNI1	14116	4837	0.016	0.4690	No
48	GCM1	19372	4856	0.016	0.4687	No
49	IFNK	11837	4951	0.016	0.4642	No
50	WISP2	14745	5010	0.015	0.4616	No
51	MNT	20784	5154	0.014	0.4544	No
52	IRS4	9183 4926	5237	0.014	0.4505	No
53	MFN1	12529 1823	5356	0.013	0.4446	No
54	RBP2	19347	5357	0.013	0.4451	No
55	EPHB2	4675 2440 8910	5459	0.012	0.4401	No
56	ETV4	20212	5562	0.012	0.4350	No
57	APLN	24164	5596	0.011	0.4336	No
58	GDPD2	24280	5641	0.011	0.4317	No
59	ALK	8574	5746	0.011	0.4265	No
60	EXTL3	21785 21786 3088	5752	0.011	0.4266	No
61	DCT	4603 21723	5934	0.010	0.4172	No
62	STAG1	5520 9905 2987	6144	0.009	0.4062	No
63	ADORA1	13831	6296	0.008	0.3983	No
64	CHRD	22817	6408	0.008	0.3926	No
65	SYT8	18006	6421	0.008	0.3922	No
66	RERE	12722	6454	0.008	0.3908	No
67	ANGPT1	8588 2260 22303	6479	0.008	0.3898	No
68	STC1	21974	6521	0.008	0.3878	No
69	WDR31	2446 15869	6805	0.007	0.3727	No
70	RPS6KA5	2076 21005	6999	0.006	0.3625	No
71	TREX2	24137	7076	0.006	0.3586	No
72	CHGA	21178 2151	7107	0.006	0.3572	No
73	TGIF2	6013 6012	7128	0.006	0.3563	No
74	EBF2	21975	7286	0.005	0.3480	No
75	SYTL2	18190 1539 3730	7347	0.005	0.3450	No
76	NKX2-2	5176	7396	0.005	0.3426	No
77	MOV10	9403 9402 5114	7491	0.005	0.3376	No
78	SLC4A10	15004	7549	0.005	0.3347	No
79	MPP2	20209	7596	0.004	0.3324	No
80	TYR	17763	7704	0.004	0.3268	No
81	SOX2	9849 15612	7808	0.004	0.3213	No
82	SLC26A7	5538 2372	7832	0.004	0.3202	No
83	MAGEL2	18221	7981	0.003	0.3123	No
84	GJA3	21807	8022	0.003	0.3103	No
85	SLITRK6	21724	8165	0.003	0.3027	No
86	PAX3	13910	8195	0.003	0.3012	No
87	NTNG2	2731 9330	8428	0.003	0.2888	No
88	HRASLS	22801	8477	0.002	0.2863	No
89	PIPOX	20340	8618	0.002	0.2787	No
90	MTSS1	5585 22285	8677	0.002	0.2757	No
91	TUFT1	1847 15253	8683	0.002	0.2755	No
92	HBP1	2048 2162 21086	8765	0.002	0.2712	No
93	NOX3	10322	8801	0.002	0.2693	No
94	SP7	22110	9020	0.001	0.2576	No
95	SLC24A4	6223	9191	0.001	0.2484	No
96	ATP8B3	12513 7426 19693	9207	0.001	0.2476	No
97	CACNB1	1443 1304	9321	0.001	0.2415	No
98	SLC2A4	20380	9412	0.001	0.2367	No
99	ASPN	21644	9424	0.001	0.2361	No
100	DLX3	20697	9537	0.001	0.2301	No
101	LOXL1	5002	9779	0.000	0.2170	No
102	RPE65	15382	9801	-0.000	0.2158	No
103	BMP6	8659	9809	-0.000	0.2155	No
104	HEY1	15378	9852	-0.000	0.2132	No
105	B2M	72 14882	9954	-0.000	0.2077	No
106	B3GALT2	6498	10026	-0.001	0.2039	No
107	ASCL2	5079	10044	-0.001	0.2030	No
108	KCNH2	16592	10523	-0.001	0.1771	No
109	SALL1	18796 12207	10678	-0.002	0.1688	No
110	NFATC3	5169	10711	-0.002	0.1672	No
111	TRIM46	1779 15281	11305	-0.003	0.1351	No
112	ZNF462	6321	11320	-0.003	0.1345	No
113	TEK	16175	11405	-0.003	0.1300	No
114	PTPN21	21009	11432	-0.003	0.1287	No
115	COL11A2	23286	11494	-0.003	0.1255	No
116	RARB	3011 21915	11529	-0.003	0.1238	No
117	SCUBE2	1879 17678	11917	-0.004	0.1030	No
118	SEMA3C	16914	11963	-0.004	0.1007	No
119	LGR6	11623 977	11984	-0.004	0.0998	No
120	FGF4	8964	12064	-0.005	0.0957	No
121	BDNF	14926 2797	12108	-0.005	0.0936	No
122	RBM9	2276 13528	12165	-0.005	0.0907	No
123	LRRTM1	17408	12345	-0.005	0.0812	No
124	ACTG2	17098	12447	-0.005	0.0759	No
125	MID1	5097 5098	12523	-0.006	0.0721	No
126	WNT16	17512 1152	12569	-0.006	0.0699	No
127	STMN4	21977	12907	-0.007	0.0518	No
128	HIPK1	4851	12913	-0.007	0.0518	No
129	NLGN3	10878	12924	-0.007	0.0516	No
130	HIP1	5676	13246	-0.008	0.0345	No
131	FGF11	20383	13286	-0.008	0.0327	No
132	CITED2	5118 14477	13352	-0.008	0.0294	No
133	SESN3	19561	13371	-0.008	0.0288	No
134	SESN2	15733	13462	-0.009	0.0243	No
135	JPH4	21826	13765	-0.010	0.0083	No
136	SLC38A3	13319	13788	-0.010	0.0075	No
137	TLX3	20501	13800	-0.010	0.0073	No
138	THBS3	15542 1796	13973	-0.011	-0.0016	No
139	AGR2	21289	14525	-0.014	-0.0310	No
140	ALDOC	20759 311	14615	-0.015	-0.0352	No
141	CALM1	21184	14639	-0.015	-0.0359	No
142	TNXB	1557 8174 878 8175	14663	-0.016	-0.0365	No
143	CACNB3	22373 8679	14881	-0.018	-0.0476	No
144	SEMA4C	9799	14897	-0.018	-0.0477	No
145	DUSP10	4003 14016	14905	-0.018	-0.0474	No
146	FGF17	21757	14914	-0.018	-0.0471	No
147	PTHR1	5318 18985	14995	-0.019	-0.0507	No
148	KLHL2	13381	15023	-0.020	-0.0514	No
149	CLSTN3	17006	15026	-0.020	-0.0507	No
150	NTRK3	2069 3652 3705 9492	15029	-0.020	-0.0501	No
151	HMGA2	4857 9098 3341 3444	15088	-0.021	-0.0524	No
152	FERD3L	21292	15256	-0.023	-0.0606	No
153	FIGF	24212	15296	-0.024	-0.0618	No
154	MAMDC1	21054 6798	15299	-0.024	-0.0610	No
155	IGSF8	14048	15391	-0.026	-0.0649	No
156	RETNLB	12178	15407	-0.026	-0.0647	No
157	ATP11C	6813 24146	15522	-0.029	-0.0698	No
158	DDIT4L	15410	15654	-0.032	-0.0756	No
159	HOXC4	4864	15715	-0.035	-0.0775	No
160	PTGDS	14658	15766	-0.036	-0.0788	No
161	SNF1LK	23033	16131	-0.052	-0.0966	No
162	ACVR1	4334	16227	-0.057	-0.0995	No
163	LAMB2	9265	16275	-0.060	-0.0998	No
164	GBA2	15898	16319	-0.063	-0.0997	No
165	CYR61	9159 15145 9311 5024	16341	-0.064	-0.0983	No
166	RNF25	13922 3929	16406	-0.069	-0.0991	No
167	BTBD3	10457 2975 6007 6006	16598	-0.083	-0.1063	No
168	RUNX1	4481	17055	-0.133	-0.1259	No
169	IMMP2L	21283	17119	-0.142	-0.1239	No
170	EIF4EBP3	8429	17190	-0.152	-0.1218	No
171	SUPT3H	23228	17235	-0.160	-0.1180	No
172	SLC15A2	22600	17347	-0.178	-0.1172	No
173	ENO3	8905	17566	-0.219	-0.1206	No
174	PNKP	4052 18258	17753	-0.258	-0.1207	No
175	EXOSC2	15044	17879	-0.297	-0.1160	No
176	MTX1	15282 1918	18148	-0.407	-0.1149	No
177	CAMTA2	10119	18370	-0.597	-0.1039	No
178	HTF9C	4886 1678	18409	-0.659	-0.0805	No
179	MBNL1	1921 15582	18427	-0.703	-0.0544	No
180	TARBP2	10033 10034 5626	18465	-0.792	-0.0258	No
181	SSBP2	3171 7364 3252	18488	-0.881	0.0069	No