Details for gene set V$FREAC4

Table: GSEA Results Summary

Dataset	Set_04_transDMproB_versus_DMpreB.phenotype_transDMproB_versus_DMpreB.cls #transDMproB_versus_DMpreB.phenotype_transDMproB_versus_DMpreB.cls #transDMproB_versus_DMpreB_repos
Phenotype	phenotype_transDMproB_versus_DMpreB.cls#transDMproB_versus_DMpreB_repos
Upregulated in class	transDMproB
GeneSet	V$FREAC4_01
Enrichment Score (ES)	0.74152577
Normalized Enrichment Score (NES)	1.6917675
Nominal p-value	0.0
FDR q-value	0.008208336
FWER p-Value	0.022

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	17260	2	6.399	0.2192	Yes
2	CDKN1A	4511 8729	54	3.444	0.3344	Yes
3	GFRA1	9015	56	3.423	0.4517	Yes
4	LEF1	1860 15420	146	2.413	0.5296	Yes
5	TCF7L2	10048 5646	397	1.602	0.5710	Yes
6	UBE2H	5823 5822	429	1.561	0.6228	Yes
7	ETHE1	18347	454	1.525	0.6738	Yes
8	MBNL2	21932	532	1.403	0.7177	Yes
9	DUSP1	23061	755	1.046	0.7415	Yes
10	CTCF	18490	1314	0.616	0.7325	No
11	PLS3	8332	1912	0.352	0.7124	No
12	ULK1	16436	2413	0.219	0.6929	No
13	KBTBD2	17137	2461	0.209	0.6975	No
14	ZFX	5984	2613	0.175	0.6953	No
15	ZADH2	23501	2791	0.137	0.6905	No
16	HEPH	24288 2623 2635 2568 2652	3656	0.049	0.6455	No
17	TLE3	5767 19416	3711	0.046	0.6442	No
18	EYA1	4695 4061	3951	0.035	0.6325	No
19	PELI2	8217	4076	0.030	0.6268	No
20	FOXB1	12254 19069	4339	0.023	0.6135	No
21	TCF1	16416	4614	0.017	0.5992	No
22	CALD1	4273 8463	4763	0.015	0.5918	No
23	PITX2	15424 1878	5080	0.011	0.5751	No
24	SLC24A2	8020 13326 8021	5326	0.009	0.5622	No
25	IBSP	16775	5360	0.009	0.5607	No
26	MYH2	20838	5562	0.008	0.5501	No
27	OTOP3	20599	5722	0.007	0.5418	No
28	SEMA5B	9801 22777	5739	0.007	0.5412	No
29	VIT	23155	5819	0.007	0.5371	No
30	OTX1	20517	6006	0.006	0.5273	No
31	NR4A1	9099	6022	0.006	0.5266	No
32	PDCD1LG2	23892	6054	0.005	0.5252	No
33	NCDN	15756 2487 6471	6108	0.005	0.5225	No
34	HOXA11	17146	6304	0.005	0.5121	No
35	HSPG2	4884 16023	6499	0.004	0.5018	No
36	PNRC1	15925	6905	0.003	0.4800	No
37	PTHR1	5318 18985	7021	0.002	0.4739	No
38	IER5	13802	7424	0.001	0.4522	No
39	GABRR1	16250	7474	0.001	0.4496	No
40	FOXD3	9088	7667	0.001	0.4393	No
41	UBXD3	15701	7805	0.000	0.4319	No
42	PHEX	24024	7827	0.000	0.4308	No
43	CAMK1D	5977 2948	8118	-0.000	0.4151	No
44	SYT10	22157	8204	-0.001	0.4106	No
45	PLUNC	9593	8412	-0.001	0.3994	No
46	ROR1	6472	8593	-0.001	0.3897	No
47	PURA	9670	9307	-0.003	0.3514	No
48	BTBD3	10457 2975 6007 6006	9707	-0.004	0.3300	No
49	FOXP2	4312 17523 8523	9740	-0.004	0.3284	No
50	LOX	23438	9741	-0.004	0.3285	No
51	NEDD4	19384 3101	9855	-0.005	0.3226	No
52	AP1G2	2677 21827	10040	-0.005	0.3128	No
53	NNAT	2764 5180	10099	-0.005	0.3099	No
54	SLC34A3	14664	10264	-0.006	0.3012	No
55	ADRB1	4357	10292	-0.006	0.3000	No
56	SPRY4	23448	10523	-0.007	0.2878	No
57	CITED2	5118 14477	10610	-0.007	0.2834	No
58	HOXD9	14982	10702	-0.007	0.2787	No
59	HR	3622 9119	11071	-0.008	0.2591	No
60	SHOX2	1802 5432	11110	-0.009	0.2573	No
61	TLX1	23839	11168	-0.009	0.2546	No
62	TNMD	24260	11443	-0.010	0.2401	No
63	EVX1	17442	11580	-0.010	0.2331	No
64	PRDM1	19775 3337	11687	-0.011	0.2278	No
65	POU3F3	14261	11719	-0.011	0.2265	No
66	FGF9	8966	12523	-0.016	0.1837	No
67	MSC	13998	12820	-0.019	0.1684	No
68	ODZ1	24168	12857	-0.019	0.1671	No
69	TECTA	19159	12912	-0.020	0.1648	No
70	RARG	22113	12941	-0.020	0.1640	No
71	TGFB3	10161	13172	-0.023	0.1524	No
72	CD109	6174 10656 19369	13229	-0.024	0.1502	No
73	ERG	1686 8915	13261	-0.024	0.1493	No
74	KLF12	4960 2637 21732 9228	13305	-0.025	0.1479	No
75	FERD3L	21292	13359	-0.025	0.1459	No
76	HOXC6	22339 2302	13410	-0.026	0.1440	No
77	ALDH1A2	19386	13551	-0.028	0.1375	No
78	COLEC12	23624 8946	13899	-0.034	0.1199	No
79	OSR2	22492	14086	-0.039	0.1112	No
80	PER2	3940 13881	14203	-0.041	0.1063	No
81	TBX4	5633	14442	-0.048	0.0951	No
82	CLDN18	19028	14496	-0.050	0.0940	No
83	MCC	552	14604	-0.055	0.0901	No
84	IGF1	3352 9156 3409	14645	-0.057	0.0899	No
85	SIN3A	5442	14777	-0.063	0.0850	No
86	PHTF2	16599	15208	-0.090	0.0648	No
87	HOXC4	4864	15620	-0.136	0.0473	No
88	PUM2	2071 8161	15940	-0.188	0.0365	No
89	PDE7A	9544 1788	16511	-0.313	0.0165	No
90	TAF5L	18712	16600	-0.339	0.0234	No
91	TRPS1	8195	16727	-0.376	0.0294	No
92	SLC31A1	2447 16195	17210	-0.554	0.0224	No
93	TMOD3	6945	17234	-0.567	0.0406	No
94	LMO4	15151	17928	-0.992	0.0371	No