Details for gene set ORGANELLE

Table: GSEA Results Summary

Dataset	Set_04_transDMpreB_versus_WTpreB.phenotype_transDMpreB_versus_WTpreB.cls #transDMpreB_versus_WTpreB
Phenotype	phenotype_transDMpreB_versus_WTpreB.cls#transDMpreB_versus_WTpreB
Upregulated in class	transDMpreB
GeneSet	ORGANELLE_LUMEN
Enrichment Score (ES)	0.6247058
Normalized Enrichment Score (NES)	1.583711
Nominal p-value	0.0
FDR q-value	0.07872064
FWER p-Value	0.501

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CDKN2A	2491 15841	2	6.131	0.0368	Yes
2	NOL1	8472 17280	52	3.101	0.0527	Yes
3	GEMIN4	6592 6591	56	3.063	0.0710	Yes
4	ETFA	4292 8495 3155	63	2.983	0.0886	Yes
5	IKBKAP	2540 6045	76	2.832	0.1050	Yes
6	EXOSC1	12379	86	2.708	0.1208	Yes
7	PARP1	8559 14027	93	2.632	0.1363	Yes
8	LYAR	16856	120	2.406	0.1494	Yes
9	NOLA2	11972	168	2.153	0.1597	Yes
10	MCM7	9372 3568	178	2.099	0.1719	Yes
11	NCL	5153 13899	191	2.049	0.1835	Yes
12	CIRH1A	18478	198	2.016	0.1953	Yes
13	MYBBP1A	5217 1232 5216	206	1.995	0.2070	Yes
14	DDX21	19751	209	1.974	0.2187	Yes
15	GNL3	21894 3356	211	1.971	0.2305	Yes
16	TCOF1	5660	225	1.917	0.2414	Yes
17	UBTF	1313 10052	236	1.867	0.2520	Yes
18	RRP9	19328	237	1.865	0.2633	Yes
19	NOLA3	14914	280	1.717	0.2713	Yes
20	CHAF1B	22694	297	1.665	0.2804	Yes
21	NOLC1	7704	300	1.658	0.2903	Yes
22	SDAD1	16479	333	1.600	0.2982	Yes
23	MRPS10	7229 12261 23212	371	1.545	0.3054	Yes
24	CPSF1	22241	394	1.518	0.3134	Yes
25	PPARGC1B	9318	401	1.508	0.3221	Yes
26	MRPS15	2442 12345	402	1.507	0.3312	Yes
27	MRPL12	12090	407	1.502	0.3400	Yes
28	BCKDHB	19365	424	1.483	0.3480	Yes
29	MKI67IP	7509	429	1.469	0.3567	Yes
30	RPP38	14698	452	1.436	0.3641	Yes
31	SNAPC4	10424	470	1.401	0.3716	Yes
32	TRPC4AP	14379 12125	475	1.394	0.3798	Yes
33	POLR3H	13460 8135	481	1.385	0.3878	Yes
34	RUVBL2	9766	517	1.325	0.3939	Yes
35	MRPS12	17907 6273	553	1.262	0.3996	Yes
36	HTRA2	1122 17103	581	1.215	0.4054	Yes
37	CHAF1A	23188	592	1.203	0.4121	Yes
38	U2AF1	8431	595	1.200	0.4192	Yes
39	MRPS18A	23222	609	1.182	0.4256	Yes
40	SUPV3L1	11677	627	1.165	0.4317	Yes
41	MPHOSPH1	23878	629	1.163	0.4386	Yes
42	RUVBL1	7131 7130	660	1.126	0.4438	Yes
43	TBP	671 1554	669	1.114	0.4500	Yes
44	NSUN2	21610	671	1.108	0.4566	Yes
45	POLR1E	7226	677	1.101	0.4630	Yes
46	MRPL55	20864	746	1.034	0.4655	Yes
47	TIMM50	17911	768	1.015	0.4704	Yes
48	IVNS1ABP	4384 4050	780	1.002	0.4759	Yes
49	PIN4	12817	809	0.970	0.4802	Yes
50	SMARCC1	9834 5459	817	0.964	0.4856	Yes
51	NARG1	7934 917	875	0.915	0.4880	Yes
52	MRPL23	9738	877	0.912	0.4934	Yes
53	GTF2H4	22999	886	0.904	0.4984	Yes
54	POLR2E	3325 19699	901	0.891	0.5030	Yes
55	POLI	23410	910	0.885	0.5079	Yes
56	NOL5A	12474	928	0.871	0.5122	Yes
57	DDX11	23169	951	0.849	0.5161	Yes
58	MORF4L2	12118	953	0.844	0.5211	Yes
59	CHEK2	16751 3587	958	0.841	0.5260	Yes
60	POP1	2214 7482	967	0.837	0.5306	Yes
61	TIMM44	3858 18941	982	0.817	0.5347	Yes
62	ASH2L	6212	1018	0.794	0.5376	Yes
63	ELP3	21782	1028	0.786	0.5418	Yes
64	RPA1	20349	1036	0.778	0.5461	Yes
65	GTF2F1	13599	1068	0.756	0.5490	Yes
66	MRPS28	15377	1070	0.755	0.5534	Yes
67	ACTB	8534 337 337 338	1099	0.736	0.5563	Yes
68	HMGA1	23323	1108	0.730	0.5603	Yes
69	CYCS	8821	1112	0.728	0.5645	Yes
70	WDHD1	21859	1119	0.725	0.5685	Yes
71	GEMIN5	20439	1134	0.713	0.5721	Yes
72	POLR2J	16672	1186	0.681	0.5734	Yes
73	ALDH4A1	16011	1199	0.675	0.5768	Yes
74	FOXF2	21677	1218	0.662	0.5798	Yes
75	HDAC1	9081	1222	0.661	0.5836	Yes
76	ZNF638	9476	1249	0.646	0.5861	Yes
77	HDAC10	22165	1310	0.615	0.5865	Yes
78	HDAC6	24197	1338	0.603	0.5886	Yes
79	MPG	20929	1347	0.597	0.5918	Yes
80	KPNA2	9245	1363	0.588	0.5945	Yes
81	MRPL40	22641	1397	0.571	0.5961	Yes
82	PTBP1	5303	1403	0.569	0.5993	Yes
83	ETFB	18279	1423	0.559	0.6016	Yes
84	RPP30	23877	1425	0.558	0.6049	Yes
85	TOP1	5790 5789 10210	1435	0.556	0.6078	Yes
86	MRPS18C	12728	1487	0.535	0.6082	Yes
87	MRE11A	3014 19560	1498	0.532	0.6108	Yes
88	SFRS2IP	7794 13009	1527	0.520	0.6124	Yes
89	RPS19	5398	1565	0.505	0.6135	Yes
90	HDAC2	20055	1583	0.497	0.6155	Yes
91	TOP2A	20257	1604	0.489	0.6174	Yes
92	ACN9	12920	1626	0.482	0.6191	Yes
93	EED	17759	1632	0.478	0.6217	Yes
94	POLG2	20180	1694	0.455	0.6211	Yes
95	GTF3C3	418	1722	0.446	0.6223	Yes
96	COIL	20708	1736	0.442	0.6243	Yes
97	TAF6	16322 891	1923	0.368	0.6163	Yes
98	ACADM	15133 1800	2016	0.337	0.6133	Yes
99	RSF1	18181	2031	0.334	0.6146	Yes
100	NAP1L4	17543	2033	0.333	0.6165	Yes
101	SRP68	20143	2035	0.331	0.6184	Yes
102	ILF2	12582	2071	0.321	0.6185	Yes
103	ASNA1	18810	2077	0.320	0.6201	Yes
104	MRPS11	12621 3150	2117	0.307	0.6198	Yes
105	SMARCE1	1218 20253	2141	0.300	0.6204	Yes
106	SLC29A2	23775	2158	0.295	0.6213	Yes
107	KRR1	6989 3313	2166	0.293	0.6227	Yes
108	SURF6	9945	2181	0.288	0.6236	Yes
109	MRPL10	20681	2200	0.280	0.6243	Yes
110	MRPS24	12262	2255	0.265	0.6230	Yes
111	ERCC8	12982 3255 3187	2272	0.260	0.6237	Yes
112	MRPL51	12361 7301	2282	0.257	0.6247	Yes
113	MED6	21028	2378	0.233	0.6209	No
114	SFRS2	9807 20136	2432	0.218	0.6193	No
115	EMG1	1016 17005	2506	0.196	0.6165	No
116	FUSIP1	4715 16036	2508	0.195	0.6176	No
117	GTF3C2	7749	2539	0.187	0.6171	No
118	HDAC3	4844	2552	0.185	0.6176	No
119	MED4	21962	2583	0.177	0.6170	No
120	CENPF	13723	2588	0.175	0.6178	No
121	NUDT21	12665	2591	0.175	0.6188	No
122	MRPS16	12311	2705	0.156	0.6135	No
123	POLR3C	15235	2708	0.155	0.6144	No
124	HSP90B1	19657	2743	0.150	0.6134	No
125	POLR2A	5394	2747	0.149	0.6141	No
126	PRPF31	7594	2754	0.148	0.6147	No
127	SMARCA5	8215	2797	0.139	0.6132	No
128	NDUFAB1	7667	2801	0.139	0.6139	No
129	XRCC6	2286 8991	2817	0.136	0.6139	No
130	NR6A1	14596	2857	0.128	0.6125	No
131	OIP5	2919 14468	2904	0.121	0.6108	No
132	GTF3C4	14635 6521	2916	0.119	0.6109	No
133	EXOSC10	2482 11943	2977	0.109	0.6082	No
134	RPL3	11330	3017	0.105	0.6067	No
135	MED12	24277	3051	0.100	0.6055	No
136	TRIM27	3264 9720	3075	0.097	0.6049	No
137	GTF3C5	14638 2685	3120	0.092	0.6030	No
138	PHF12	11192 6483	3229	0.080	0.5976	No
139	RPL36	12024	3261	0.077	0.5963	No
140	POP7	16329	3298	0.074	0.5948	No
141	POLQ	13407 22768	3312	0.073	0.5946	No
142	DNAJA3	1732 13518	3357	0.070	0.5926	No
143	DDX24	2084 20995	3424	0.064	0.5893	No
144	TOP2B	5791	3451	0.063	0.5883	No
145	TAF5	23833 5934 3759	3501	0.059	0.5860	No
146	CDK8	6455 6456 3585 3542	3524	0.058	0.5851	No
147	TAF11	12733	3545	0.057	0.5844	No
148	ERCC3	23605	3553	0.056	0.5843	No
149	RBBP5	5620 5619	3561	0.056	0.5843	No
150	NOL6	2385 2405 15913 2466	3596	0.054	0.5827	No
151	MRPS21	12323	3601	0.054	0.5828	No
152	SMARCD3	12446	3618	0.053	0.5823	No
153	NFS1	2903 14377	3640	0.052	0.5815	No
154	RBPJ	9709 3594 5370	3651	0.052	0.5812	No
155	PRM2	9621	3709	0.049	0.5784	No
156	RPP40	21491	3829	0.044	0.5722	No
157	NAP1L1	19882 3427 330 9485 5193	3830	0.044	0.5724	No
158	DBT	1770 4599	3991	0.038	0.5639	No
159	ARID1A	8214 2501 13554	4021	0.037	0.5625	No
160	SHFM1	17220	4068	0.036	0.5602	No
161	KIN	15120	4081	0.035	0.5598	No
162	SAP30	18871	4117	0.034	0.5581	No
163	SAP18	5406	4216	0.032	0.5529	No
164	SMARCB1	19728	4252	0.031	0.5512	No
165	NF2	1222 5166	4275	0.030	0.5502	No
166	PMF1	12452	4319	0.029	0.5480	No
167	ABL1	2693 4301 2794	4331	0.029	0.5476	No
168	NCOA6	2876 14382	4388	0.028	0.5447	No
169	CPSF3	7038	4677	0.023	0.5291	No
170	LRCH4	10544 6090	4709	0.022	0.5275	No
171	HSD3B2	4873 4874 15229 4875 9126	4862	0.021	0.5193	No
172	XRN2	2936 6302 2905	4992	0.019	0.5124	No
173	HIPK2	17180	5079	0.018	0.5078	No
174	GLIS2	8179 13500	5122	0.017	0.5056	No
175	GCM1	19372	5140	0.017	0.5047	No
176	TIMM23	7004 5768	5158	0.017	0.5039	No
177	WDR4	1629 1521 12190 7175	5245	0.016	0.4993	No
178	NPAS2	5186	5351	0.015	0.4937	No
179	PAX8	2791 14671	5383	0.015	0.4921	No
180	GTF2H1	4069 18236	5435	0.015	0.4894	No
181	ERCC2	1549 18363 3812	5439	0.015	0.4893	No
182	NKX2-5	23060	5490	0.014	0.4866	No
183	BNIP3	17581	5557	0.014	0.4831	No
184	MDM2	19620 3327	5559	0.014	0.4831	No
185	NPM1	1196	5715	0.012	0.4747	No
186	NUP98	17726	5728	0.012	0.4741	No
187	ARID4A	2080 6215	5859	0.012	0.4671	No
188	TAF9	3213 8433	5916	0.011	0.4641	No
189	FMR1	24321	5960	0.011	0.4618	No
190	IFI16	13745	5962	0.011	0.4618	No
191	DDX56	6984	6107	0.010	0.4540	No
192	OGG1	17331	6135	0.010	0.4526	No
193	ATP5F1	15212	6185	0.010	0.4500	No
194	NDUFS1	13940	6418	0.009	0.4374	No
195	TAF4	14319	6646	0.008	0.4250	No
196	CBX1	8704 19044	6872	0.007	0.4127	No
197	POLR3K	12447 7372	6896	0.007	0.4115	No
198	HIF1A	4850	7024	0.007	0.4046	No
199	PITX2	15424 1878	7190	0.006	0.3956	No
200	FIGLA	17383	7220	0.006	0.3941	No
201	NCR1	18409	7363	0.005	0.3863	No
202	TDG	10107 5703	7690	0.005	0.3685	No
203	XPO1	4172	8147	0.003	0.3436	No
204	RCN1	9710	8161	0.003	0.3429	No
205	RTCD1	15183	8265	0.003	0.3373	No
206	SP100	5482	8594	0.002	0.3194	No
207	NFYC	9460	8772	0.002	0.3097	No
208	PITRM1	21710	8876	0.002	0.3041	No
209	MRPS22	19031	8918	0.001	0.3019	No
210	MBTPS1	18730 3809 3770	9117	0.001	0.2910	No
211	UBE2I	5819 5820	9396	0.000	0.2758	No
212	EPAS1	23144	9522	-0.000	0.2690	No
213	POLA1	24112	9653	-0.000	0.2619	No
214	TAF7	6287 1968	9680	-0.000	0.2605	No
215	NLRP5	10743 18358	9798	-0.001	0.2541	No
216	OPA1	13169 22800 7894	10063	-0.001	0.2397	No
217	GEMIN6	12492 7415	10191	-0.002	0.2327	No
218	TEP1	21849	10405	-0.002	0.2211	No
219	TOPBP1	10659	10535	-0.003	0.2141	No
220	FOXE3	15801	10723	-0.003	0.2038	No
221	WRN	5882 10315	10865	-0.003	0.1962	No
222	ATXN3	21001 2051	10979	-0.004	0.1900	No
223	CALR	18814	11414	-0.005	0.1663	No
224	EXOSC9	15610	11477	-0.005	0.1629	No
225	DNMT3A	2167 21330	11521	-0.005	0.1606	No
226	ELP4	8094	11639	-0.006	0.1543	No
227	PTF1A	15110	11667	-0.006	0.1528	No
228	GTF3C1	10607 17646	11737	-0.006	0.1491	No
229	MRPS36	7257	11759	-0.006	0.1480	No
230	PHB	9558	11778	-0.006	0.1470	No
231	NAP1L3	24266	11813	-0.006	0.1452	No
232	NAP1L2	24087	11970	-0.007	0.1367	No
233	POLR2B	16817	12059	-0.007	0.1319	No
234	GRPEL1	16863	12071	-0.007	0.1314	No
235	THRAP3	6062	12306	-0.008	0.1186	No
236	DNAJB9	6565	12447	-0.009	0.1110	No
237	HS3ST1	16542	12466	-0.009	0.1101	No
238	EZH2	1092 17163	12637	-0.010	0.1009	No
239	HSD3B1	15227	12902	-0.011	0.0865	No
240	NEK11	3099 19016	13095	-0.013	0.0761	No
241	HTATIP	3690	13142	-0.013	0.0736	No
242	SMARCD1	2241 22360 2250	13191	-0.013	0.0711	No
243	SMC3	8811 23815 8812 4571	13400	-0.015	0.0598	No
244	GATM	14451	13445	-0.015	0.0575	No
245	MPHOSPH10	17805	13549	-0.016	0.0519	No
246	SPTBN4	13471 1104	13558	-0.016	0.0516	No
247	CS	19839	13645	-0.017	0.0470	No
248	BCKDK	18061 1391	13699	-0.018	0.0442	No
249	POLH	22966	13705	-0.018	0.0441	No
250	TAP2	23282	13723	-0.018	0.0432	No
251	CASQ1	13752 8695	13801	-0.019	0.0391	No
252	NOL4	2028 11432	13819	-0.019	0.0383	No
253	ZBTB16	10647	13931	-0.021	0.0324	No
254	TFIP11	16746	13959	-0.021	0.0310	No
255	TAF12	2537 16058 2338	14357	-0.028	0.0095	No
256	FGF18	4721 1351	14368	-0.028	0.0091	No
257	ATXN1	21477	14373	-0.028	0.0091	No
258	ELF4	24162	14390	-0.028	0.0083	No
259	CLOCK	8749 16507 4530	14582	-0.033	-0.0019	No
260	NUFIP1	21955	14685	-0.036	-0.0073	No
261	ELL2	5329	14734	-0.037	-0.0097	No
262	NOL3	18496 915 921	14751	-0.038	-0.0103	No
263	DYRK1A	4649	14792	-0.039	-0.0123	No
264	PHF21A	14943	14857	-0.041	-0.0155	No
265	RPS7	9760	14888	-0.043	-0.0169	No
266	ACTL6A	12136 13068 16662 3457 3554	14959	-0.045	-0.0205	No
267	PML	3015 3074 3020 5270	15074	-0.050	-0.0264	No
268	TAF6L	5923	15296	-0.062	-0.0381	No
269	NUP54	11231 11232 6516	15306	-0.062	-0.0382	No
270	SMAD2	23511	15397	-0.069	-0.0427	No
271	NFYA	5172	15486	-0.077	-0.0471	No
272	CHMP1A	10634	15491	-0.078	-0.0468	No
273	HDAC9	21084 2131	15539	-0.081	-0.0489	No
274	TFB2M	4024 9092 4083	15652	-0.090	-0.0545	No
275	NDUFA13	7400	15666	-0.092	-0.0547	No
276	RPL35	12360	15718	-0.097	-0.0569	No
277	NR3C1	9043	15860	-0.114	-0.0639	No
278	ISG20	18210	15942	-0.130	-0.0675	No
279	DEDD	14056	16010	-0.142	-0.0703	No
280	PPARGC1A	16533	16024	-0.143	-0.0702	No
281	RPL11	12450	16025	-0.143	-0.0693	No
282	TXNDC4	15886	16043	-0.146	-0.0694	No
283	TOPORS	15920	16047	-0.147	-0.0687	No
284	SMARCA4	19538	16048	-0.147	-0.0678	No
285	ING2	18877	16062	-0.151	-0.0676	No
286	MRPL52	22019	16065	-0.152	-0.0668	No
287	HDAC11	17356	16254	-0.196	-0.0759	No
288	MYO6	19368	16356	-0.219	-0.0801	No
289	APTX	2455 7291	16402	-0.230	-0.0812	No
290	MRPS35	17237 1068	16462	-0.244	-0.0829	No
291	CIB1	17780	16647	-0.297	-0.0912	No
292	HDAC8	24090	16662	-0.303	-0.0901	No
293	RBM14	3673 12087	16698	-0.316	-0.0901	No
294	ZNF148	5949	16748	-0.333	-0.0908	No
295	ZNF346	3163 6517 3193	16763	-0.338	-0.0895	No
296	MCRS1	6961 6960 6962	16776	-0.342	-0.0881	No
297	KLHL7	16907	16815	-0.357	-0.0881	No
298	CDK9	14619	16869	-0.384	-0.0887	No
299	INTS6	5184 126	16883	-0.388	-0.0870	No
300	SMARCD2	13515	16976	-0.426	-0.0895	No
301	CCNT1	22140 11607	17006	-0.435	-0.0885	No
302	YEATS4	19621	17021	-0.439	-0.0866	No
303	BCKDHA	17925	17032	-0.442	-0.0845	No
304	SMUG1	22109	17033	-0.443	-0.0818	No
305	TAF10	10785	17099	-0.469	-0.0826	No
306	TAF13	8288	17255	-0.525	-0.0879	No
307	DDX47	17261 12577 1133	17533	-0.678	-0.0990	No
308	HES6	13882 4058	17539	-0.683	-0.0951	No
309	HDAC7A	22147	17570	-0.699	-0.0926	No
310	RELA	23783	17583	-0.705	-0.0890	No
311	RB1	21754	17584	-0.706	-0.0847	No
312	RBM39	9316 5032	17595	-0.712	-0.0810	No
313	GEMIN7	17944	17607	-0.725	-0.0772	No
314	GIT2	11174 6462	17614	-0.730	-0.0732	No
315	NFYB	5173	17675	-0.773	-0.0718	No
316	ERCC5	14255 4097	17678	-0.776	-0.0672	No
317	EPC1	2039 8907 2033	17680	-0.777	-0.0626	No
318	DDX54	7778	17683	-0.778	-0.0580	No
319	SMAD4	5058	17806	-0.873	-0.0595	No
320	SEP15	13527 1895 15398	17861	-0.914	-0.0569	No
321	HCLS1	22770	17891	-0.942	-0.0528	No
322	PPP1R9B	20698	17924	-0.988	-0.0486	No
323	DEDD2	7429	17995	-1.072	-0.0460	No
324	ASF1A	20025	18025	-1.105	-0.0410	No
325	HDAC5	1480 20205	18194	-1.345	-0.0421	No
326	MEN1	3716 9382	18246	-1.467	-0.0360	No
327	HNRPK	9106 9105 3265 4861	18257	-1.492	-0.0276	No
328	EDF1	2890 12224	18274	-1.528	-0.0193	No
329	LMO4	15151	18276	-1.537	-0.0101	No
330	ARNTL	18119	18377	-1.808	-0.0047	No
331	TP53	20822	18549	-2.941	0.0037	No