Details for gene set V$MSX1

Table: GSEA Results Summary

Dataset	Set_04_transDMpreB_versus_WTpreB.phenotype_transDMpreB_versus_WTpreB.cls #transDMpreB_versus_WTpreB
Phenotype	phenotype_transDMpreB_versus_WTpreB.cls#transDMpreB_versus_WTpreB
Upregulated in class	WTpreB
GeneSet	V$MSX1_01
Enrichment Score (ES)	-0.64069813
Normalized Enrichment Score (NES)	-1.5222709
Nominal p-value	0.0022222223
FDR q-value	0.15375887
FWER p-Value	0.684

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CIRH1A	18478	198	2.016	0.0437	No
2	GAD1	14993 2690	876	0.913	0.0316	No
3	HSD3B7	4158	895	0.897	0.0549	No
4	CHERP	11367	934	0.868	0.0762	No
5	SH3BGRL2	5601	1101	0.736	0.0871	No
6	TSGA14	17194	2125	0.305	0.0400	No
7	MCTS1	24351	2174	0.291	0.0452	No
8	NXF1	11986	2679	0.160	0.0223	No
9	UROD	15791	2717	0.154	0.0244	No
10	NR6A1	14596	2857	0.128	0.0204	No
11	TITF1	10180 21062	2912	0.120	0.0207	No
12	MDGA1	13231	2974	0.110	0.0203	No
13	DNAJB4	12451 1916 1832	2999	0.108	0.0219	No
14	VCAM1	5851	3050	0.100	0.0219	No
15	FOXP2	4312 17523 8523	3267	0.076	0.0123	No
16	RTN4RL1	20782	3348	0.070	0.0099	No
17	HOXB7	666 9110	3467	0.061	0.0051	No
18	KCTD5	23096	3480	0.060	0.0061	No
19	FLNA	24129	3592	0.054	0.0016	No
20	H2AFY	21447	3733	0.048	-0.0047	No
21	HOXC4	4864	3955	0.039	-0.0156	No
22	JMJD2A	10505 6058	3974	0.039	-0.0155	No
23	SALL1	18796 12207	4028	0.037	-0.0174	No
24	SPOCK2	13585	4198	0.032	-0.0257	No
25	ADAM11	4340 1432	4514	0.026	-0.0420	No
26	TRERF1	1546 23213	4713	0.022	-0.0521	No
27	EOMES	4669	4740	0.022	-0.0530	No
28	SKIL	15617	5343	0.015	-0.0851	No
29	PMP22	9594 1312	5451	0.014	-0.0905	No
30	GRK6	6449	5869	0.012	-0.1128	No
31	STMN4	21977	6079	0.010	-0.1238	No
32	POSTN	1801 11927	6178	0.010	-0.1288	No
33	BDNF	14926 2797	6229	0.010	-0.1313	No
34	ZIC1	19040	6535	0.008	-0.1475	No
35	PCDH12	7005	6584	0.008	-0.1499	No
36	KCNJ2	20612	6625	0.008	-0.1519	No
37	ADAMTSL1	16181	6670	0.008	-0.1540	No
38	PLAC1	12079	6700	0.008	-0.1554	No
39	NMU	16506	6804	0.007	-0.1607	No
40	NTS	19635 3297	6806	0.007	-0.1606	No
41	HOXD3	9115	6843	0.007	-0.1624	No
42	CALM1	21184	6895	0.007	-0.1649	No
43	EN1	387 14155	6944	0.007	-0.1673	No
44	NEUROD6	17138	7095	0.006	-0.1753	No
45	ZIC4	5992	7199	0.006	-0.1807	No
46	PHOX2B	16524	7272	0.006	-0.1844	No
47	CRX	17961 4694	7608	0.005	-0.2024	No
48	ASB5	13322	8155	0.003	-0.2319	No
49	EYA1	4695 4061	8207	0.003	-0.2345	No
50	ACTA1	18715	8440	0.003	-0.2470	No
51	ELAVL2	15839	8502	0.002	-0.2502	No
52	KIF9	19292	8521	0.002	-0.2512	No
53	HABP2	10364 23825	8591	0.002	-0.2548	No
54	NOG	13663	8741	0.002	-0.2628	No
55	CBLN2	23498	8895	0.001	-0.2711	No
56	SLC6A14	12168	8927	0.001	-0.2727	No
57	WNT6	5881	9202	0.001	-0.2875	No
58	NKX2-2	5176	9246	0.001	-0.2898	No
59	SYTL2	18190 1539 3730	9646	-0.000	-0.3114	No
60	EBF2	21975	9754	-0.001	-0.3172	No
61	EPHA7	8909 4674	10087	-0.002	-0.3351	No
62	CACNA1H	23077	10200	-0.002	-0.3411	No
63	RARB	3011 21915	10377	-0.002	-0.3506	No
64	MSX1	16547	10509	-0.003	-0.3576	No
65	LHX6	9275 2914	10689	-0.003	-0.3672	No
66	SIM1	20031	10815	-0.003	-0.3739	No
67	ARX	24290	10825	-0.003	-0.3743	No
68	KCNAB1	1791 15577	10868	-0.003	-0.3764	No
69	MAP2K7	6453	10987	-0.004	-0.3827	No
70	CBX5	22108 4485	11480	-0.005	-0.4092	No
71	FSCN2	20569	11496	-0.005	-0.4099	No
72	GRIN2B	16957	11537	-0.005	-0.4119	No
73	BSPRY	5307	11623	-0.006	-0.4163	No
74	COL6A3	4546 13885 13884	11709	-0.006	-0.4208	No
75	MITF	17349	11764	-0.006	-0.4235	No
76	DLX1	14988	12045	-0.007	-0.4385	No
77	CCKAR	16531	12133	-0.007	-0.4430	No
78	COL27A1	6885	12216	-0.008	-0.4472	No
79	DRD3	22750	12341	-0.008	-0.4537	No
80	POU4F2	9603 5276	12393	-0.009	-0.4562	No
81	CCDC3	15122	12405	-0.009	-0.4566	No
82	SMAD1	18831 922	12519	-0.009	-0.4624	No
83	HOXA11	17146	12539	-0.009	-0.4632	No
84	SPRY2	21725	12759	-0.011	-0.4748	No
85	MAB21L2	15305	12840	-0.011	-0.4788	No
86	PIPOX	20340	13081	-0.012	-0.4914	No
87	NOL4	2028 11432	13819	-0.019	-0.5308	No
88	MAB21L1	15589 5046	14032	-0.022	-0.5417	No
89	A2BP1	11212 1652 1689	14530	-0.031	-0.5677	No
90	SHOX2	1802 5432	14688	-0.036	-0.5752	No
91	AIG1	7272	14698	-0.036	-0.5747	No
92	ELL2	5329	14734	-0.037	-0.5756	No
93	LIMS1	8493 4290	14750	-0.038	-0.5754	No
94	HOXC6	22339 2302	14775	-0.039	-0.5757	No
95	NCDN	15756 2487 6471	14793	-0.039	-0.5756	No
96	MPPE1	23417 2013	14903	-0.043	-0.5803	No
97	POU2F1	5275 3989 4065 4010	14921	-0.044	-0.5800	No
98	JAK3	9198 4936	15025	-0.048	-0.5843	No
99	DLX5	17219 1058	15063	-0.050	-0.5850	No
100	PKHD1	6292 4106	15271	-0.060	-0.5945	No
101	DLL1	23119	15370	-0.067	-0.5980	No
102	KIF1B	15671 2476 4950 15673	15536	-0.081	-0.6048	No
103	BCAR3	15432	15560	-0.083	-0.6038	No
104	NR2F1	7015 21401	15561	-0.083	-0.6016	No
105	FUT11	13084	15733	-0.099	-0.6081	No
106	CDH5	18512	15813	-0.108	-0.6095	No
107	GPR12	16291	16045	-0.147	-0.6181	No
108	CDK5	16591	16077	-0.157	-0.6155	No
109	HMGN2	9095	16174	-0.179	-0.6159	No
110	LPXN	8399	16634	-0.295	-0.6327	Yes
111	ING3	17514 1019	16687	-0.312	-0.6272	Yes
112	NQO2	9469 3167	16712	-0.320	-0.6198	Yes
113	CDC14A	15184	16732	-0.329	-0.6120	Yes
114	BTBD9	23040	17010	-0.437	-0.6152	Yes
115	GNA13	20617	17337	-0.563	-0.6176	Yes
116	GTPBP2	23221	17578	-0.701	-0.6117	Yes
117	ESRRA	23802	17590	-0.710	-0.5932	Yes
118	HOXB4	20686	17727	-0.811	-0.5787	Yes
119	SLC4A2	9828	17799	-0.866	-0.5592	Yes
120	ETV5	22630	17811	-0.879	-0.5361	Yes
121	FOXP1	4242	17816	-0.882	-0.5125	Yes
122	VAV1	23173	17823	-0.886	-0.4889	Yes
123	RAP2C	24156	17921	-0.982	-0.4677	Yes
124	EHD4	8275	18265	-1.508	-0.4456	Yes
125	BNIP3L	21775	18286	-1.555	-0.4048	Yes
126	ELMO1	3275 8939 3202 3271 3254 3235 3164 3175 3274 3188 3293 3214 3218 3239	18347	-1.737	-0.3612	Yes
127	ARNTL	18119	18377	-1.808	-0.3140	Yes
128	HNRPA1	9103 4860	18392	-1.837	-0.2652	Yes
129	SOX4	5479	18455	-2.118	-0.2114	Yes
130	SPAG5	20760 1341	18515	-2.537	-0.1462	Yes
131	CAP1	8684	18528	-2.681	-0.0746	Yes
132	TP53	20822	18549	-2.941	0.0036	Yes