Details for gene set V$FREAC4

Table: GSEA Results Summary

Dataset	Set_04_transDMpreB_versus_WTpreB.phenotype_transDMpreB_versus_WTpreB.cls #transDMpreB_versus_WTpreB
Phenotype	phenotype_transDMpreB_versus_WTpreB.cls#transDMpreB_versus_WTpreB
Upregulated in class	WTpreB
GeneSet	V$FREAC4_01
Enrichment Score (ES)	-0.65677553
Normalized Enrichment Score (NES)	-1.5008057
Nominal p-value	0.004347826
FDR q-value	0.14278471
FWER p-Value	0.796

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TAF5L	18712	883	0.907	0.0023	No
2	ETHE1	18347	1272	0.631	0.0162	No
3	SIN3A	5442	2058	0.325	-0.0082	No
4	PHTF2	16599	2290	0.255	-0.0067	No
5	HSPG2	4884 16023	2413	0.224	-0.0009	No
6	TRPS1	8195	2903	0.121	-0.0206	No
7	FOXP2	4312 17523 8523	3267	0.076	-0.0360	No
8	FERD3L	21292	3934	0.040	-0.0698	No
9	HOXC4	4864	3955	0.039	-0.0687	No
10	TBX4	5633	4080	0.035	-0.0735	No
11	TECTA	19159	4159	0.033	-0.0758	No
12	AP1G2	2677 21827	4196	0.032	-0.0760	No
13	PDCD1LG2	23892	4415	0.027	-0.0863	No
14	HR	3622 9119	4612	0.024	-0.0955	No
15	PER2	3940 13881	4652	0.023	-0.0964	No
16	HOXD9	14982	4971	0.019	-0.1125	No
17	MYH2	20838	5047	0.018	-0.1155	No
18	LEF1	1860 15420	5148	0.017	-0.1200	No
19	IBSP	16775	5277	0.016	-0.1260	No
20	ALDH1A2	19386	5372	0.015	-0.1302	No
21	SEMA5B	9801 22777	5632	0.013	-0.1435	No
22	PTHR1	5318 18985	5633	0.013	-0.1428	No
23	UBE2H	5823 5822	5663	0.013	-0.1437	No
24	CAMK1D	5977 2948	6084	0.010	-0.1658	No
25	IER5	13802	6164	0.010	-0.1695	No
26	CITED2	5118 14477	6512	0.009	-0.1877	No
27	TNMD	24260	6612	0.008	-0.1926	No
28	SPRY4	23448	6618	0.008	-0.1924	No
29	COLEC12	23624 8946	6861	0.007	-0.2051	No
30	NR4A1	9099	6906	0.007	-0.2071	No
31	PITX2	15424 1878	7190	0.006	-0.2220	No
32	SLC24A2	8020 13326 8021	7307	0.006	-0.2280	No
33	ADRB1	4357	7467	0.005	-0.2363	No
34	SLC34A3	14664	7609	0.005	-0.2436	No
35	EYA1	4695 4061	8207	0.003	-0.2757	No
36	OTX1	20517	8461	0.003	-0.2892	No
37	TCF1	16416	8601	0.002	-0.2966	No
38	KLF12	4960 2637 21732 9228	8710	0.002	-0.3023	No
39	CALD1	4273 8463	8892	0.001	-0.3120	No
40	IGF1	3352 9156 3409	8900	0.001	-0.3123	No
41	BTBD3	10457 2975 6007 6006	9028	0.001	-0.3191	No
42	ROR1	6472	9160	0.001	-0.3261	No
43	OSR2	22492	9502	-0.000	-0.3445	No
44	RARG	22113	9538	-0.000	-0.3464	No
45	PLUNC	9593	9560	-0.000	-0.3475	No
46	ERG	1686 8915	9637	-0.000	-0.3516	No
47	ODZ1	24168	9659	-0.000	-0.3527	No
48	TCF7L2	10048 5646	9715	-0.001	-0.3557	No
49	UBXD3	15701	10015	-0.001	-0.3717	No
50	TLX1	23839	10118	-0.002	-0.3771	No
51	PNRC1	15925	10244	-0.002	-0.3838	No
52	NNAT	2764 5180	10580	-0.003	-0.4017	No
53	HEPH	24288 2623 2635 2568 2652	10640	-0.003	-0.4048	No
54	PURA	9670	10677	-0.003	-0.4065	No
55	VIT	23155	10851	-0.003	-0.4157	No
56	POU3F3	14261	11115	-0.004	-0.4297	No
57	GABRR1	16250	11192	-0.004	-0.4335	No
58	PRDM1	19775 3337	11758	-0.006	-0.4637	No
59	FOXB1	12254 19069	11900	-0.007	-0.4709	No
60	PHEX	24024	12526	-0.009	-0.5041	No
61	HOXA11	17146	12539	-0.009	-0.5043	No
62	LOX	23438	12570	-0.010	-0.5054	No
63	FOXD3	9088	12809	-0.011	-0.5176	No
64	CLDN18	19028	12890	-0.011	-0.5213	No
65	PELI2	8217	13394	-0.015	-0.5477	No
66	SYT10	22157	13421	-0.015	-0.5483	No
67	EVX1	17442	13574	-0.016	-0.5556	No
68	TLE3	5767 19416	14511	-0.031	-0.6044	No
69	SHOX2	1802 5432	14688	-0.036	-0.6119	No
70	CD109	6174 10656 19369	14770	-0.038	-0.6142	No
71	HOXC6	22339 2302	14775	-0.039	-0.6123	No
72	NCDN	15756 2487 6471	14793	-0.039	-0.6110	No
73	FGF9	8966	15013	-0.048	-0.6202	No
74	MSC	13998	15064	-0.050	-0.6202	No
75	OTOP3	20599	15484	-0.077	-0.6386	No
76	ULK1	16436	15588	-0.085	-0.6394	No
77	TGFB3	10161	15910	-0.122	-0.6500	Yes
78	MCC	552	15993	-0.138	-0.6468	Yes
79	NEDD4	19384 3101	16169	-0.177	-0.6465	Yes
80	PUM2	2071 8161	16197	-0.184	-0.6378	Yes
81	SLC31A1	2447 16195	16295	-0.205	-0.6317	Yes
82	ZADH2	23501	16450	-0.240	-0.6268	Yes
83	CTCF	18490	16654	-0.300	-0.6212	Yes
84	PLS3	8332	16817	-0.358	-0.6102	Yes
85	ZFX	5984	17401	-0.596	-0.6088	Yes
86	PDE7A	9544 1788	17646	-0.750	-0.5806	Yes
87	KBTBD2	17137	17749	-0.823	-0.5407	Yes
88	TMOD3	6945	18021	-1.103	-0.4945	Yes
89	EMP1	17260	18061	-1.160	-0.4326	Yes
90	MBNL2	21932	18117	-1.242	-0.3671	Yes
91	LMO4	15151	18276	-1.537	-0.2909	Yes
92	DUSP1	23061	18323	-1.672	-0.2011	Yes
93	GFRA1	9015	18417	-1.911	-0.1007	Yes
94	CDKN1A	4511 8729	18439	-2.021	0.0096	Yes