Details for gene set V$GRE

Table: GSEA Results Summary

Dataset	Set_04_transDMpreB_versus_DMpreB.phenotype_transDMpreB_versus_DMpreB.cls #transDMpreB_versus_DMpreB.phenotype_transDMpreB_versus_DMpreB.cls #transDMpreB_versus_DMpreB_repos
Phenotype	phenotype_transDMpreB_versus_DMpreB.cls#transDMpreB_versus_DMpreB_repos
Upregulated in class	DMpreB
GeneSet	V$GRE_C
Enrichment Score (ES)	-0.5803954
Normalized Enrichment Score (NES)	-1.3196822
Nominal p-value	0.06903765
FDR q-value	0.98899734
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	BTK	24061	369	0.566	0.0401	No
2	SORL1	5474	639	0.391	0.0670	No
3	MEF2C	3204 9378	787	0.327	0.0937	No
4	ST13	12865	1693	0.130	0.0586	No
5	LUC7L	47 1520	1969	0.096	0.0539	No
6	GPD1	22361	2391	0.063	0.0378	No
7	NOTCH4	23277 9475	2734	0.045	0.0242	No
8	NSD1	2134 5197	2777	0.044	0.0266	No
9	FGF17	21757	3120	0.034	0.0117	No
10	FERD3L	21292	3235	0.031	0.0088	No
11	THRAP1	20309	3304	0.029	0.0082	No
12	CDKN2C	15806 2321	3336	0.028	0.0095	No
13	MBNL2	21932	3427	0.026	0.0074	No
14	SCNN1A	17278	3582	0.024	0.0016	No
15	SFRS6	14751	3612	0.023	0.0025	No
16	PAX3	13910	4275	0.015	-0.0316	No
17	SEMA3A	16919	4448	0.014	-0.0395	No
18	ELAVL4	15805 4889 9137	4871	0.011	-0.0611	No
19	NPR2	16230	4966	0.011	-0.0650	No
20	CDKL5	24019	5340	0.009	-0.0842	No
21	SLC7A2	4431 8644	5488	0.008	-0.0913	No
22	ANGPTL2	15032 18104	5529	0.008	-0.0926	No
23	KIF13A	21475	6166	0.006	-0.1263	No
24	PRRX1	9595 5271	6205	0.006	-0.1277	No
25	ATF7	10303 5869	6352	0.005	-0.1351	No
26	TIAL1	996 5753	6368	0.005	-0.1353	No
27	CUZD1	17598	6952	0.004	-0.1664	No
28	NDUFS1	13940	6973	0.004	-0.1671	No
29	PPIL5	21255	7336	0.003	-0.1863	No
30	PIK3R1	3170	7781	0.002	-0.2101	No
31	LSAMP	1690 6500	7989	0.001	-0.2211	No
32	KCNA5	9203	8590	0.000	-0.2535	No
33	CHST9	7727	8831	-0.000	-0.2664	No
34	DCX	24040 8841 4604	8883	-0.000	-0.2691	No
35	NRG1	3885	8910	-0.000	-0.2705	No
36	KCTD15	17864	9012	-0.001	-0.2758	No
37	RIMS2	4370	9139	-0.001	-0.2825	No
38	MYL3	19291	10126	-0.003	-0.3354	No
39	CTGF	20068	10412	-0.004	-0.3504	No
40	BDNF	14926 2797	10471	-0.004	-0.3531	No
41	NNAT	2764 5180	10991	-0.005	-0.3805	No
42	ADK	3302 3454 8555	11116	-0.006	-0.3866	No
43	OTX1	20517	11148	-0.006	-0.3876	No
44	SMPX	24220	11161	-0.006	-0.3877	No
45	PRDM1	19775 3337	11218	-0.006	-0.3901	No
46	ROS1	19771	11751	-0.008	-0.4179	No
47	ONECUT2	10346	11762	-0.008	-0.4177	No
48	ARX	24290	11970	-0.008	-0.4279	No
49	HOXA3	9108 1075	12121	-0.009	-0.4351	No
50	LMOD1	14119	12516	-0.011	-0.4552	No
51	RTKN	17394 1156	12629	-0.012	-0.4600	No
52	LOXL1	5002	12690	-0.012	-0.4620	No
53	PRG4	13592 4036	12982	-0.014	-0.4762	No
54	GAB2	1821 18184 2025	13305	-0.016	-0.4919	No
55	WIF1	19866	13853	-0.021	-0.5192	No
56	HOXC6	22339 2302	13875	-0.021	-0.5181	No
57	LHX6	9275 2914	14105	-0.024	-0.5279	No
58	ATP1A3	21	14577	-0.032	-0.5500	No
59	SALL2	21840	14743	-0.035	-0.5552	No
60	MYCT1	7572	14833	-0.037	-0.5561	No
61	HOXC4	4864	15189	-0.046	-0.5704	No
62	AP4M1	3499 16656	15358	-0.051	-0.5740	No
63	LRRN3	21077	15477	-0.055	-0.5745	Yes
64	SNX16	15374	15514	-0.057	-0.5704	Yes
65	ATP5G3	14558	15609	-0.061	-0.5690	Yes
66	MT2A	18523	15683	-0.064	-0.5661	Yes
67	JPH1	13994	15713	-0.066	-0.5607	Yes
68	SF3B1	13954	15878	-0.074	-0.5618	Yes
69	UBE3A	1209 1084 1830	15942	-0.077	-0.5570	Yes
70	TCF12	10044 3125	15972	-0.078	-0.5503	Yes
71	LZTS2	10362	16068	-0.083	-0.5466	Yes
72	EEF1B2	4131 12063	16101	-0.085	-0.5392	Yes
73	NR2F1	7015 21401	16363	-0.103	-0.5425	Yes
74	METAP1	15154	16460	-0.111	-0.5359	Yes
75	CSNK1G1	3057 5671 19397	16576	-0.120	-0.5294	Yes
76	RAB11A	7013	16990	-0.164	-0.5344	Yes
77	MAPK6	19062	17726	-0.259	-0.5466	Yes
78	PRKAG1	22135	17739	-0.261	-0.5196	Yes
79	RRAGD	11964	17865	-0.291	-0.4956	Yes
80	EGR1	23598	18044	-0.337	-0.4695	Yes
81	TMOD3	6945	18060	-0.342	-0.4341	Yes
82	RAB10	2090 21119	18334	-0.514	-0.3945	Yes
83	MCM7	9372 3568	18494	-0.936	-0.3039	Yes
84	TANK	2839 15006 2729	18515	-1.112	-0.1872	Yes
85	GNB1L	8921 22827	18576	-1.818	0.0022	Yes