Details for gene set V$SOX9

Table: GSEA Results Summary

Dataset	Set_04_DMpreB_versus_WTpreB.phenotype_DMpreB_versus_WTpreB.cls #DMpreB_versus_WTpreB
Phenotype	phenotype_DMpreB_versus_WTpreB.cls#DMpreB_versus_WTpreB
Upregulated in class	WTpreB
GeneSet	V$SOX9_B1
Enrichment Score (ES)	-0.6473028
Normalized Enrichment Score (NES)	-1.5854489
Nominal p-value	0.0
FDR q-value	0.0582318
FWER p-Value	0.314

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PICALM	18191	434	1.477	0.0069	No
2	NASP	2383 2387 6955	563	1.299	0.0267	No
3	HYAL2	4891	1208	0.709	0.0064	No
4	APRIN	4145	1397	0.592	0.0084	No
5	FEN1	8961	1416	0.580	0.0194	No
6	MPHOSPH1	23878	1472	0.554	0.0278	No
7	ILF2	12582	1478	0.553	0.0389	No
8	TNNI2	18005	1708	0.454	0.0358	No
9	TOP2A	20257	1811	0.415	0.0388	No
10	RBBP4	5364	2244	0.277	0.0211	No
11	NEO1	5161	2437	0.227	0.0154	No
12	DPYSL5	92	2764	0.152	0.0008	No
13	RERE	12722	3008	0.109	-0.0101	No
14	EFNA1	15279	3105	0.096	-0.0133	No
15	UBE3A	1209 1084 1830	3147	0.091	-0.0137	No
16	BCL2L11	2790 14861	3239	0.082	-0.0169	No
17	NFIB	15855	3275	0.080	-0.0172	No
18	WEE1	18127	3278	0.080	-0.0156	No
19	PPP1R16B	6014	3308	0.077	-0.0156	No
20	TOP1	5790 5789 10210	3339	0.073	-0.0158	No
21	NFIX	9458	3539	0.060	-0.0253	No
22	HOXC10	22342	3592	0.058	-0.0269	No
23	HSPG2	4884 16023	3633	0.056	-0.0279	No
24	PLSCR3	20819	3640	0.056	-0.0271	No
25	FBN2	23433	3687	0.053	-0.0285	No
26	SLC39A14	3517 5611 21762	3692	0.053	-0.0277	No
27	BCL11B	7190	3782	0.049	-0.0315	No
28	RTN4	7569 1328 1343 1442	3878	0.045	-0.0357	No
29	MYCT1	7572	3921	0.043	-0.0371	No
30	RGS3	2434 2474 6937 11935 2374 2332 2445 2390	3960	0.042	-0.0383	No
31	FN1	4091 4094 971 13929	3971	0.042	-0.0380	No
32	PHC1	17013	3972	0.042	-0.0371	No
33	OLFM1	2918 2971	4150	0.036	-0.0460	No
34	EPHB6	17473	4183	0.036	-0.0470	No
35	RKHD1	10693	4235	0.034	-0.0490	No
36	ZIC4	5992	4401	0.030	-0.0574	No
37	CDK8	6455 6456 3585 3542	4453	0.029	-0.0595	No
38	APBA1	11483	4542	0.028	-0.0637	No
39	DOCK4	10705	4551	0.027	-0.0636	No
40	TMEFF1	16209	4569	0.027	-0.0640	No
41	E2F1	14384	4578	0.027	-0.0638	No
42	HOXA10	17145 989	4684	0.025	-0.0690	No
43	SOX2	9849 15612	4695	0.025	-0.0691	No
44	HOXB7	666 9110	4847	0.023	-0.0768	No
45	DAAM1	5536	4895	0.022	-0.0789	No
46	FST	8985	4936	0.022	-0.0806	No
47	LHX6	9275 2914	5012	0.021	-0.0842	No
48	VLDLR	5858 3763 912 3682	5053	0.020	-0.0860	No
49	MBP	23502	5107	0.020	-0.0884	No
50	CD36	8712	5135	0.020	-0.0895	No
51	SYT4	5566	5145	0.020	-0.0896	No
52	DLX1	14988	5157	0.019	-0.0898	No
53	NEUROD6	17138	5322	0.018	-0.0983	No
54	TNRC4	15514	5336	0.018	-0.0986	No
55	RAB5A	11310	5448	0.016	-0.1043	No
56	MYT1	36	5595	0.015	-0.1119	No
57	CADPS	11298	5745	0.014	-0.1197	No
58	ARHGEF19	10035	5785	0.014	-0.1215	No
59	HOXA2	17151	5806	0.014	-0.1224	No
60	MYST3	18651	5868	0.013	-0.1254	No
61	ELAVL2	15839	5949	0.013	-0.1295	No
62	STC1	21974	6071	0.012	-0.1358	No
63	ZIC1	19040	6577	0.010	-0.1630	No
64	DLC1	11931 3855	6643	0.009	-0.1663	No
65	GNAO1	4785 3829	6928	0.008	-0.1815	No
66	DPYSL2	3122 4561 8787	6947	0.008	-0.1823	No
67	KLHL13	12536	7082	0.008	-0.1894	No
68	STK38L	17240	7314	0.007	-0.2018	No
69	PAK1	9527	7592	0.006	-0.2167	No
70	PFN2	15337 1818	7658	0.006	-0.2201	No
71	TEK	16175	7668	0.006	-0.2205	No
72	SASH1	19826	7857	0.005	-0.2306	No
73	MAOB	24182 2556	7861	0.005	-0.2306	No
74	ELAVL4	15805 4889 9137	8277	0.004	-0.2531	No
75	ERG	1686 8915	8404	0.004	-0.2598	No
76	TBX6	1993 18075	8479	0.003	-0.2638	No
77	NEUROD2	20262	8783	0.003	-0.2801	No
78	PBX1	5224	8922	0.002	-0.2876	No
79	CER1	15853	9035	0.002	-0.2936	No
80	FBLN5	21002	9357	0.001	-0.3110	No
81	RCN1	9710	9422	0.001	-0.3144	No
82	DNAJA2	12133 18806	9472	0.001	-0.3170	No
83	PCDH12	7005	9487	0.001	-0.3178	No
84	NR4A1	9099	9752	0.000	-0.3321	No
85	SH3BP1	632 22431	9867	0.000	-0.3383	No
86	PDE9A	23301	10122	-0.000	-0.3520	No
87	TLX3	20501	10139	-0.000	-0.3529	No
88	PNRC1	15925	10359	-0.001	-0.3647	No
89	GRK5	9036 23814	10447	-0.001	-0.3694	No
90	BASP1	7668	10492	-0.001	-0.3718	No
91	ZIC2	21927	10646	-0.002	-0.3800	No
92	TEAD1	18121	10711	-0.002	-0.3835	No
93	SPATS2	13044	10939	-0.002	-0.3957	No
94	CCNJ	23859	11083	-0.003	-0.4034	No
95	FANK1	18041	11093	-0.003	-0.4039	No
96	DCX	24040 8841 4604	11305	-0.003	-0.4152	No
97	CDON	12195	11674	-0.005	-0.4351	No
98	SOX5	9850 1044 5480 16937	11802	-0.005	-0.4419	No
99	MFAP5	17296	11821	-0.005	-0.4427	No
100	PPP1R14D	14471	11905	-0.005	-0.4471	No
101	GJA12	20433 1323	12024	-0.006	-0.4534	No
102	SIX1	9821	12055	-0.006	-0.4549	No
103	SLIT2	5456	12159	-0.006	-0.4604	No
104	TNFRSF19L	11498 6727 6726	12325	-0.007	-0.4692	No
105	NCAM1	5149	12342	-0.007	-0.4699	No
106	CDKN1B	4512 8730	12441	-0.007	-0.4751	No
107	NGFR	5174	12926	-0.010	-0.5011	No
108	PRKCH	21246	13221	-0.012	-0.5168	No
109	FGFR1	3789 8968	13224	-0.012	-0.5167	No
110	TIA1	5752	13326	-0.012	-0.5219	No
111	CHL1	17347 1146 8741 4520	13345	-0.012	-0.5226	No
112	LRRN1	17343	13347	-0.012	-0.5224	No
113	SYTL2	18190 1539 3730	13371	-0.013	-0.5234	No
114	ARF4	22072	13640	-0.015	-0.5376	No
115	FLRT3	7730 12930 2673	13656	-0.015	-0.5381	No
116	SEMA6C	1797 5424	13742	-0.016	-0.5424	No
117	TNPO1	6232 3179	13859	-0.017	-0.5483	No
118	HOXC6	22339 2302	13871	-0.017	-0.5486	No
119	SLC13A5	133	13906	-0.018	-0.5500	No
120	PELI2	8217	14120	-0.021	-0.5612	No
121	DHX40	20307	14121	-0.021	-0.5607	No
122	MLLT6	20678	14148	-0.021	-0.5617	No
123	PTPN12	16597 3502 3586 3665	14152	-0.022	-0.5614	No
124	PER1	20827	14179	-0.022	-0.5624	No
125	TCL1A	20987	14250	-0.024	-0.5657	No
126	RBM9	2276 13528	14341	-0.025	-0.5700	No
127	DGKA	3359 19589	14560	-0.030	-0.5812	No
128	DMD	24295 2647	14603	-0.032	-0.5829	No
129	BSN	18997	14694	-0.035	-0.5870	No
130	RNF12	5384	14741	-0.036	-0.5888	No
131	TLE1	5765 10185 15859	14912	-0.042	-0.5971	No
132	PTMA	9657	15085	-0.050	-0.6054	No
133	PCBP2	9533	15180	-0.055	-0.6094	No
134	ETV1	4688 8925 8924	15435	-0.071	-0.6217	No
135	HDAC9	21084 2131	15520	-0.080	-0.6246	No
136	SEPHS1	15125	15542	-0.081	-0.6241	No
137	KCNN2	8933 1949	15751	-0.103	-0.6332	No
138	NAV1	3978 5681	15757	-0.104	-0.6313	No
139	MAP4K4	11241	15790	-0.111	-0.6308	No
140	FGFR2	1917 4722 1119	15859	-0.122	-0.6320	No
141	CPNE1	11186	16035	-0.154	-0.6383	No
142	TAL1	16129	16041	-0.156	-0.6353	No
143	ABCF2	11338 6580 6579	16181	-0.187	-0.6390	No
144	CASK	24184 2618 2604	16195	-0.190	-0.6358	No
145	ELAVL1	4888	16344	-0.228	-0.6392	No
146	PUM1	8160	16449	-0.260	-0.6394	No
147	SEC24C	22086	16595	-0.305	-0.6410	Yes
148	RHOBTB1	12789	16603	-0.307	-0.6351	Yes
149	USP25	22721	16660	-0.329	-0.6313	Yes
150	POLB	9599	16694	-0.338	-0.6262	Yes
151	SLC39A9	11597	16720	-0.346	-0.6204	Yes
152	ZDHHC9	24163	16791	-0.370	-0.6166	Yes
153	ZFYVE1	10138	16934	-0.418	-0.6157	Yes
154	DTX1	16396	17166	-0.515	-0.6176	Yes
155	MEIS1	20524	17464	-0.681	-0.6197	Yes
156	MYO18A	20766	17506	-0.707	-0.6073	Yes
157	ADRB2	23422	17695	-0.828	-0.6005	Yes
158	MAP3K3	20626	17998	-1.103	-0.5941	Yes
159	DDX6	3086 8844	18045	-1.167	-0.5726	Yes
160	TRIM8	23824	18075	-1.202	-0.5494	Yes
161	TRIB2	21102	18084	-1.214	-0.5248	Yes
162	HHEX	23872	18228	-1.455	-0.5026	Yes
163	MAML1	20477	18259	-1.534	-0.4727	Yes
164	SCD	23662	18301	-1.654	-0.4408	Yes
165	HMGB1	9094 4855	18316	-1.694	-0.4067	Yes
166	SSBP3	2439 7814 2431	18357	-1.795	-0.3719	Yes
167	SOX4	5479	18427	-2.035	-0.3338	Yes
168	KLF3	4961	18510	-2.545	-0.2858	Yes
169	MARCKS	9331	18562	-3.238	-0.2219	Yes
170	DUSP6	19891 3399	18594	-4.601	-0.1288	Yes
171	ERH	9614 4681	18612	-6.311	0.0002	Yes