Details for gene set V$MSX1

Table: GSEA Results Summary

Dataset	Set_04_DMpreB_versus_WTpreB.phenotype_DMpreB_versus_WTpreB.cls #DMpreB_versus_WTpreB
Phenotype	phenotype_DMpreB_versus_WTpreB.cls#DMpreB_versus_WTpreB
Upregulated in class	WTpreB
GeneSet	V$MSX1_01
Enrichment Score (ES)	-0.67885715
Normalized Enrichment Score (NES)	-1.6051801
Nominal p-value	0.002173913
FDR q-value	0.052014433
FWER p-Value	0.242

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CIRH1A	18478	172	2.288	0.0506	No
2	SH3BGRL2	5601	967	0.866	0.0304	No
3	CHERP	11367	1682	0.465	0.0039	No
4	UROD	15791	1974	0.360	-0.0024	No
5	MCTS1	24351	2043	0.339	0.0028	No
6	HSD3B7	4158	2422	0.231	-0.0116	No
7	TSGA14	17194	2614	0.187	-0.0170	No
8	KCTD5	23096	2693	0.168	-0.0168	No
9	NR6A1	14596	3057	0.101	-0.0338	No
10	HOXC4	4864	3198	0.085	-0.0391	No
11	DNAJB4	12451 1916 1832	3224	0.084	-0.0383	No
12	EOMES	4669	3344	0.073	-0.0428	No
13	VCAM1	5851	3731	0.051	-0.0624	No
14	ADAMTSL1	16181	3924	0.043	-0.0717	No
15	MDGA1	13231	3925	0.043	-0.0705	No
16	BSPRY	5307	3964	0.042	-0.0715	No
17	FOXP2	4312 17523 8523	3965	0.042	-0.0704	No
18	TRERF1	1546 23213	4149	0.036	-0.0793	No
19	SMAD1	18831 922	4321	0.032	-0.0878	No
20	ZIC4	5992	4401	0.030	-0.0912	No
21	GAD1	14993 2690	4810	0.023	-0.1127	No
22	HOXB7	666 9110	4847	0.023	-0.1141	No
23	LHX6	9275 2914	5012	0.021	-0.1224	No
24	JMJD2A	10505 6058	5046	0.021	-0.1236	No
25	STMN4	21977	5057	0.020	-0.1236	No
26	NOL4	2028 11432	5092	0.020	-0.1250	No
27	NR2F1	7015 21401	5097	0.020	-0.1246	No
28	DLX1	14988	5157	0.019	-0.1273	No
29	WNT6	5881	5282	0.018	-0.1336	No
30	NEUROD6	17138	5322	0.018	-0.1352	No
31	NTS	19635 3297	5751	0.014	-0.1580	No
32	BDNF	14926 2797	5772	0.014	-0.1587	No
33	COL6A3	4546 13885 13884	5816	0.013	-0.1607	No
34	KCNAB1	1791 15577	5930	0.013	-0.1665	No
35	ELAVL2	15839	5949	0.013	-0.1671	No
36	SALL1	18796 12207	6196	0.011	-0.1801	No
37	EN1	387 14155	6409	0.010	-0.1913	No
38	NMU	16506	6503	0.010	-0.1961	No
39	TITF1	10180 21062	6524	0.010	-0.1969	No
40	ZIC1	19040	6577	0.010	-0.1995	No
41	SPOCK2	13585	6642	0.009	-0.2027	No
42	CALM1	21184	6700	0.009	-0.2055	No
43	CBLN2	23498	6788	0.009	-0.2100	No
44	ADAM11	4340 1432	6991	0.008	-0.2207	No
45	POSTN	1801 11927	7049	0.008	-0.2236	No
46	COL27A1	6885	7714	0.005	-0.2594	No
47	ARX	24290	7842	0.005	-0.2661	No
48	PHOX2B	16524	7926	0.005	-0.2705	No
49	EPHA7	8909 4674	8308	0.004	-0.2910	No
50	CRX	17961 4694	8361	0.004	-0.2937	No
51	KCNJ2	20612	8380	0.004	-0.2946	No
52	MAP2K7	6453	8614	0.003	-0.3071	No
53	CCKAR	16531	8624	0.003	-0.3075	No
54	SLC6A14	12168	8653	0.003	-0.3090	No
55	MSX1	16547	8673	0.003	-0.3099	No
56	HOXD3	9115	9064	0.002	-0.3310	No
57	ACTA1	18715	9301	0.001	-0.3437	No
58	NKX2-2	5176	9308	0.001	-0.3440	No
59	PCDH12	7005	9487	0.001	-0.3536	No
60	PLAC1	12079	9642	0.001	-0.3619	No
61	SIM1	20031	9814	0.000	-0.3712	No
62	NOG	13663	10030	-0.000	-0.3828	No
63	DRD3	22750	10108	-0.000	-0.3869	No
64	EBF2	21975	10186	-0.001	-0.3911	No
65	ASB5	13322	10274	-0.001	-0.3958	No
66	NCDN	15756 2487 6471	10452	-0.001	-0.4053	No
67	EYA1	4695 4061	10600	-0.002	-0.4132	No
68	RTN4RL1	20782	10603	-0.002	-0.4133	No
69	RARB	3011 21915	10781	-0.002	-0.4228	No
70	CACNA1H	23077	10856	-0.002	-0.4268	No
71	CCDC3	15122	10903	-0.002	-0.4292	No
72	KIF9	19292	10999	-0.003	-0.4343	No
73	FSCN2	20569	11163	-0.003	-0.4430	No
74	SKIL	15617	11169	-0.003	-0.4432	No
75	HOXA11	17146	11691	-0.005	-0.4712	No
76	SPRY2	21725	11810	-0.005	-0.4775	No
77	GRIN2B	16957	11902	-0.005	-0.4823	No
78	MITF	17349	11903	-0.005	-0.4821	No
79	PMP22	9594 1312	12282	-0.007	-0.5024	No
80	CBX5	22108 4485	12504	-0.008	-0.5142	No
81	MAB21L2	15305	12656	-0.009	-0.5221	No
82	HABP2	10364 23825	12911	-0.010	-0.5356	No
83	POU4F2	9603 5276	13020	-0.010	-0.5412	No
84	SYTL2	18190 1539 3730	13371	-0.013	-0.5598	No
85	A2BP1	11212 1652 1689	13682	-0.015	-0.5762	No
86	HOXC6	22339 2302	13871	-0.017	-0.5859	No
87	PIPOX	20340	13990	-0.019	-0.5918	No
88	MAB21L1	15589 5046	13994	-0.019	-0.5914	No
89	SHOX2	1802 5432	14158	-0.022	-0.5997	No
90	AIG1	7272	14670	-0.034	-0.6264	No
91	ELL2	5329	14712	-0.035	-0.6277	No
92	GRK6	6449	14996	-0.046	-0.6418	No
93	POU2F1	5275 3989 4065 4010	15053	-0.048	-0.6436	No
94	PKHD1	6292 4106	15216	-0.057	-0.6509	No
95	DLL1	23119	15244	-0.059	-0.6508	No
96	KIF1B	15671 2476 4950 15673	15329	-0.064	-0.6537	No
97	LIMS1	8493 4290	15332	-0.064	-0.6521	No
98	MPPE1	23417 2013	15333	-0.064	-0.6504	No
99	DLX5	17219 1058	15351	-0.065	-0.6496	No
100	CDH5	18512	15432	-0.071	-0.6521	No
101	HMGN2	9095	15538	-0.081	-0.6557	No
102	FUT11	13084	15848	-0.120	-0.6692	No
103	GPR12	16291	15875	-0.125	-0.6674	No
104	NQO2	9469 3167	15995	-0.146	-0.6700	No
105	BCAR3	15432	16160	-0.183	-0.6741	Yes
106	NXF1	11986	16194	-0.190	-0.6709	Yes
107	JAK3	9198 4936	16236	-0.199	-0.6679	Yes
108	H2AFY	21447	16389	-0.241	-0.6698	Yes
109	FLNA	24129	16483	-0.269	-0.6678	Yes
110	ING3	17514 1019	16529	-0.284	-0.6628	Yes
111	CDK5	16591	16566	-0.296	-0.6569	Yes
112	LPXN	8399	16734	-0.351	-0.6568	Yes
113	BTBD9	23040	17046	-0.463	-0.6615	Yes
114	CDC14A	15184	17137	-0.504	-0.6531	Yes
115	GNA13	20617	17482	-0.692	-0.6536	Yes
116	RAP2C	24156	17516	-0.713	-0.6367	Yes
117	HOXB4	20686	17598	-0.758	-0.6212	Yes
118	BNIP3L	21775	17704	-0.839	-0.6049	Yes
119	ETV5	22630	17725	-0.855	-0.5836	Yes
120	ESRRA	23802	17796	-0.905	-0.5637	Yes
121	VAV1	23173	17925	-1.033	-0.5435	Yes
122	SLC4A2	9828	17961	-1.069	-0.5174	Yes
123	FOXP1	4242	18090	-1.220	-0.4924	Yes
124	EHD4	8275	18216	-1.417	-0.4620	Yes
125	GTPBP2	23221	18322	-1.708	-0.4229	Yes
126	ELMO1	3275 8939 3202 3271 3254 3235 3164 3175 3274 3188 3293 3214 3218 3239	18325	-1.717	-0.3780	Yes
127	ARNTL	18119	18345	-1.760	-0.3329	Yes
128	HNRPA1	9103 4860	18370	-1.836	-0.2861	Yes
129	SOX4	5479	18427	-2.035	-0.2358	Yes
130	SPAG5	20760 1341	18508	-2.540	-0.1736	Yes
131	CAP1	8684	18546	-2.934	-0.0987	Yes
132	TP53	20822	18582	-3.909	0.0018	Yes