Details for gene set V$E12

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_wtNotch.phenotype_truncNotch_versus_wtNotch.cls #wtNotch_versus_truncNotch.phenotype_truncNotch_versus_wtNotch.cls #wtNotch_versus_truncNotch_repos
Phenotype	phenotype_truncNotch_versus_wtNotch.cls#wtNotch_versus_truncNotch_repos
Upregulated in class	truncNotch
GeneSet	V$E12_Q6
Enrichment Score (ES)	-0.5158868
Normalized Enrichment Score (NES)	-1.3162124
Nominal p-value	0.029032258
FDR q-value	0.8650776
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TPM3	670600 3170296 5670167 6650471	2	4.583	0.1274	No
2	MFNG	1770242 4280348	342	0.747	0.1298	No
3	RRAGC	5910348	579	0.577	0.1331	No
4	RUNX1	3840711	602	0.563	0.1475	No
5	NEDD4L	6380368	661	0.535	0.1593	No
6	EGLN1	2480180 3120253 6110195	724	0.502	0.1699	No
7	CFL1	2340735	1010	0.389	0.1653	No
8	OSR1	1500025	1264	0.319	0.1604	No
9	PLAGL2	1770148	1306	0.305	0.1667	No
10	LRP10	1580128	1471	0.262	0.1651	No
11	SLC23A2	6660722	1550	0.245	0.1677	No
12	NUP88	2510044 6760180	1687	0.219	0.1664	No
13	HMGN2	3140091	1972	0.172	0.1558	No
14	GRB2	6650398	2342	0.122	0.1391	No
15	LNX2	3130025	2455	0.111	0.1361	No
16	WNT6	4570364	2497	0.106	0.1369	No
17	SORT1	1850242 2320632 3870537	2503	0.106	0.1395	No
18	NTRK3	4050687 4070167 4610026 6100484	2796	0.083	0.1260	No
19	TGFB3	1070041	2869	0.077	0.1242	No
20	PACSIN3	4540369 4540400 5360037 6940129	3071	0.063	0.1151	No
21	EYA3	1580195 6510632	3124	0.060	0.1139	No
22	CAMK2A	1740333 1940112 4150292	3196	0.055	0.1116	No
23	CAMK1D	1660100 2350309	3475	0.043	0.0977	No
24	RIN1	510593	3517	0.041	0.0967	No
25	ADAM12	3390132 4070347	3596	0.038	0.0935	No
26	TRIM23	580168 6510672	3607	0.038	0.0940	No
27	TNFAIP1	6940593	3753	0.033	0.0871	No
28	WDR20	1240373	3862	0.030	0.0820	No
29	EIF2C1	6900551	3904	0.029	0.0806	No
30	CDH5	5340487	4039	0.026	0.0741	No
31	CNNM2	2650100	4041	0.026	0.0747	No
32	SSH2	360056	4096	0.024	0.0725	No
33	ASB14	5860427	4240	0.022	0.0653	No
34	CHRDL1	1580037 6380204	4394	0.019	0.0576	No
35	COL4A4	1050541	4520	0.018	0.0513	No
36	ITGA6	3830129	4560	0.017	0.0496	No
37	ELMO1	110338 1190451 1580148 1850609 2350706 2370369 2450129 3840113 4150184 4280079 6290066 6380435 6770494 7100180	4731	0.015	0.0409	No
38	SIM1	1770332	4790	0.015	0.0381	No
39	NTRK2	6220463	4827	0.014	0.0366	No
40	RAB26	5910025	4848	0.014	0.0359	No
41	PIM2	840136 5720692 7100577	4949	0.013	0.0308	No
42	KCNN3	6520600 6420138	5093	0.012	0.0234	No
43	SOX17	5270551	5141	0.011	0.0211	No
44	HR	2690095 6200300	5150	0.011	0.0210	No
45	FUT8	1340068 2340056	5196	0.011	0.0189	No
46	DSCAM	1780050 2450731 2810438	5269	0.011	0.0153	No
47	KLHL13	6590731	5335	0.010	0.0120	No
48	RAPGEF4	6100563	5421	0.010	0.0077	No
49	NEGR1	1940731 5130170	5509	0.009	0.0032	No
50	WTAP	4010176	5639	0.008	-0.0035	No
51	ANKRD2	6590427	5790	0.007	-0.0115	No
52	PCDH15	7000438	5906	0.007	-0.0175	No
53	TCF2	870338 5050632	5950	0.007	-0.0197	No
54	GRIA1	1340152 3780750 4920440	5971	0.007	-0.0206	No
55	UNC13B	130735	5976	0.007	-0.0206	No
56	MTSS1	780435 2370114	6065	0.006	-0.0252	No
57	MYH14	4010017	6066	0.006	-0.0250	No
58	GFAP	2060092	6098	0.006	-0.0266	No
59	TREX2	4920707	6535	0.004	-0.0501	No
60	LAMA5	2680722	6546	0.004	-0.0505	No
61	NPEPPS	2630731	6563	0.004	-0.0513	No
62	COL4A3	5910075	6607	0.004	-0.0535	No
63	NBL1	2480021	6734	0.003	-0.0602	No
64	HIF3A	2630053 2680102 6450364	6853	0.003	-0.0665	No
65	AP1S2	780279 4280707	6960	0.003	-0.0722	No
66	SLC12A5	1980692	6961	0.003	-0.0721	No
67	NHLH1	6100452	7193	0.002	-0.0846	No
68	SORCS2	6350520	7241	0.002	-0.0871	No
69	FGF11	840292	7297	0.002	-0.0900	No
70	BMP6	2100128	7330	0.002	-0.0917	No
71	PTPRJ	4010707	7635	0.001	-0.1082	No
72	CCNL2	6520167	7961	-0.000	-0.1258	No
73	KCNB1	3610035	8065	-0.000	-0.1314	No
74	PPARA	2060026	8143	-0.001	-0.1355	No
75	FOXI1	3710095 6620195	8372	-0.001	-0.1479	No
76	CHRND	840403 2260670	8515	-0.002	-0.1555	No
77	MTUS1	780348 4920609	8638	-0.002	-0.1621	No
78	ARVCF	2190537	8656	-0.002	-0.1629	No
79	SOST	1170195	8793	-0.003	-0.1702	No
80	SFTPC	3290133	8891	-0.003	-0.1754	No
81	ARHGEF12	3990195	8997	-0.003	-0.1810	No
82	NFATC4	2470735	9153	-0.004	-0.1893	No
83	GPM6B	6220458	9482	-0.005	-0.2070	No
84	GPR37	2320093	9502	-0.005	-0.2079	No
85	CORO2B	2340035 4850390	9529	-0.005	-0.2092	No
86	DLL3	4010093	9532	-0.005	-0.2092	No
87	GATA2	6590280	9658	-0.005	-0.2158	No
88	DOC2A	6020121	9769	-0.005	-0.2216	No
89	ZNF205	6900022	9971	-0.006	-0.2324	No
90	CPA4	3610100	10045	-0.006	-0.2361	No
91	GDPD2	7000040	10224	-0.007	-0.2456	No
92	CENTG3	2470079 4610092 5050170	10278	-0.007	-0.2483	No
93	ALDH1A2	2320301	10378	-0.008	-0.2534	No
94	RTN4RL2	6450609	10509	-0.008	-0.2603	No
95	ODC1	5670168	10563	-0.008	-0.2629	No
96	ROBO3	6550408	10652	-0.009	-0.2674	No
97	CALN1	3610722	10703	-0.009	-0.2699	No
98	NR4A1	6290161	10808	-0.009	-0.2753	No
99	MYOZ3	1990138	10895	-0.010	-0.2797	No
100	ANK2	6510546	10963	-0.010	-0.2830	No
101	HSD11B2	5900053	10970	-0.010	-0.2831	No
102	SLC24A3	5080707	11279	-0.011	-0.2995	No
103	CPZ	70193	11282	-0.011	-0.2993	No
104	GJB2	5900609 6200487	11322	-0.012	-0.3011	No
105	IRX6	4590025	11410	-0.012	-0.3054	No
106	PPP1R9B	3130619	11732	-0.014	-0.3225	No
107	RASSF2	2480079 5720546	11760	-0.014	-0.3235	No
108	MT3	1450537	11846	-0.015	-0.3277	No
109	KCNK12	4070072	11852	-0.015	-0.3276	No
110	CHST9	4560092	11928	-0.015	-0.3312	No
111	CYP26A1	380022 2690600	12057	-0.016	-0.3377	No
112	CALB1	460070	12242	-0.018	-0.3472	No
113	POU2F3	2030601	12466	-0.019	-0.3588	No
114	FSCN2	1230039	12490	-0.020	-0.3595	No
115	TEAD4	1850239 6380519	12636	-0.021	-0.3668	No
116	DLL1	1770377	12807	-0.023	-0.3753	No
117	DNMT3A	4050068 4810717	12980	-0.025	-0.3840	No
118	CDH2	520435 2450451 2760025 6650477	13234	-0.028	-0.3969	No
119	NOL4	5050446 5360519	13315	-0.029	-0.4005	No
120	CANX	4760402	13498	-0.032	-0.4094	No
121	TNNC2	3840079	13577	-0.033	-0.4127	No
122	PRKAG2	2340100	13820	-0.037	-0.4248	No
123	PLCB3	4670402	13869	-0.038	-0.4264	No
124	HOXB7	4540706 4610358	13966	-0.040	-0.4305	No
125	GGN	1410528 4210082 5290170	14054	-0.042	-0.4340	No
126	FYN	2100468 4760520 4850687	14128	-0.044	-0.4367	No
127	MDGA1	1170139	14197	-0.046	-0.4391	No
128	BRUNOL4	4490452 5080451	14228	-0.046	-0.4395	No
129	PLEC1	6520292 50500 380075 1570088 2510692 2630497 2680017 2900746 4560497 4850376 6290398 7040471	14267	-0.047	-0.4402	No
130	PHACTR3	3850435 5900445	14303	-0.048	-0.4408	No
131	LRP5	2100397 3170484	14383	-0.050	-0.4437	No
132	DNAJB5	2900215	14457	-0.052	-0.4462	No
133	SCG2	5670438 130671	14639	-0.058	-0.4544	No
134	FGF8	6350504	14643	-0.059	-0.4529	No
135	POFUT1	1570458	14707	-0.060	-0.4547	No
136	USP2	1190292 1240253 4850035	14758	-0.062	-0.4557	No
137	SEMA3F	5420601 6770731	14775	-0.063	-0.4548	No
138	SYT4	5080193	15095	-0.076	-0.4700	No
139	ACTN3	3140541 6480598	15137	-0.078	-0.4700	No
140	CXCL14	840114 6450324	15221	-0.082	-0.4722	No
141	ITGB4	1740021 3840482	15402	-0.093	-0.4794	No
142	TNFRSF21	6380100	15441	-0.096	-0.4788	No
143	IGFBP5	2360592	15508	-0.100	-0.4796	No
144	INVS	4200632 6620528	15703	-0.113	-0.4870	No
145	SIPA1	5220687	15726	-0.115	-0.4850	No
146	DEF6	840593	16024	-0.144	-0.4971	No
147	CORO2A	3840605 6620390	16206	-0.163	-0.5023	No
148	CRELD1	2060253	16307	-0.176	-0.5029	No
149	STC2	4920601	16393	-0.187	-0.5023	No
150	IGSF8	1580592	16486	-0.198	-0.5018	No
151	ARHGAP24	540278 4540025	16533	-0.205	-0.4986	No
152	NEURL	5390538	16648	-0.220	-0.4986	No
153	CENTB1	2120093	16675	-0.223	-0.4938	No
154	ARID5A	2450133	16789	-0.242	-0.4932	No
155	PSTPIP1	3190156	17111	-0.293	-0.5025	No
156	SLC37A4	6400079	17359	-0.344	-0.5063	Yes
157	HMGA1	6580408	17390	-0.349	-0.4982	Yes
158	SASH1	4070270	17444	-0.358	-0.4911	Yes
159	GRB7	2100471	17483	-0.366	-0.4830	Yes
160	GPD1	2480095	17833	-0.474	-0.4888	Yes
161	GFRA1	3610152	17836	-0.478	-0.4756	Yes
162	ELOVL1	2450019 4760138 5340685	17838	-0.478	-0.4623	Yes
163	TNFSF13	2650170	17840	-0.479	-0.4491	Yes
164	ENO3	5270136	17901	-0.501	-0.4384	Yes
165	SELL	1190500	17938	-0.519	-0.4259	Yes
166	PTK2B	4730411	18025	-0.567	-0.4148	Yes
167	SMAD3	6450671	18084	-0.607	-0.4010	Yes
168	PPOX	2640678 3850102	18090	-0.614	-0.3842	Yes
169	AIG1	2450091	18259	-0.795	-0.3712	Yes
170	HEYL	5860528	18352	-0.937	-0.3502	Yes
171	TTC17	2470440	18373	-0.967	-0.3243	Yes
172	RANGAP1	2320593 6650601	18486	-1.244	-0.2958	Yes
173	HES6	540411 6550504	18520	-1.504	-0.2558	Yes
174	CKM	1450524	18536	-1.575	-0.2128	Yes
175	POLR1D	70082 450750 6040458	18579	-2.354	-0.1495	Yes
176	IGF2	6510020	18590	-2.564	-0.0787	Yes
177	GNAS	630441 1850373 4050152	18597	-2.879	0.0010	Yes