Details for gene set V$NMYC

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy_repos
Phenotype	phenotype_truncNotch_versus_normalThy.cls#truncNotch_versus_normalThy_repos
Upregulated in class	truncNotch
GeneSet	V$NMYC_01
Enrichment Score (ES)	0.5592185
Normalized Enrichment Score (NES)	1.3668886
Nominal p-value	0.008784773
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PABPC1	2650180 2690253 6020632 1990270	22	4.554	0.0706	Yes
2	PABPC4	1990170 6760270 5390138	29	4.133	0.1354	Yes
3	TIMM10	610070 1450019	45	3.538	0.1903	Yes
4	HMOX1	1740687	64	3.070	0.2377	Yes
5	SH3KBP1	670102 2850458 7000309	167	2.200	0.2668	Yes
6	CEBPB	2970019	183	2.087	0.2989	Yes
7	VARS2	1410017 3800114 4210270	265	1.789	0.3227	Yes
8	G6PC3	1580487 5390253	349	1.594	0.3433	Yes
9	IPO4	5050619	487	1.348	0.3571	Yes
10	ATAD3A	4050288	489	1.342	0.3782	Yes
11	FBL	5130020	550	1.266	0.3949	Yes
12	BCL7C	460050	578	1.234	0.4129	Yes
13	DUSP4	2690044 2850593	625	1.163	0.4287	Yes
14	PA2G4	2030463	771	1.012	0.4368	Yes
15	ATP5G1	5290019	777	1.007	0.4524	Yes
16	GPD1	2480095	840	0.958	0.4642	Yes
17	HSPE1	3170438	974	0.864	0.4706	Yes
18	COPS7A	3940458 7000022	989	0.858	0.4833	Yes
19	PRDX4	3800039	1047	0.818	0.4931	Yes
20	VPS16	430064 3390041 6860301	1076	0.794	0.5041	Yes
21	HYAL2	1500152	1097	0.780	0.5153	Yes
22	PSEN2	130382	1288	0.662	0.5154	Yes
23	PPAT	1980019	1342	0.632	0.5225	Yes
24	EIF4B	5390563 5270577	1494	0.564	0.5232	Yes
25	ANXA6	2190014	1560	0.540	0.5282	Yes
26	NOL5A	5570139	1787	0.459	0.5232	Yes
27	GTPBP1	2230541 4560528	1846	0.441	0.5270	Yes
28	DLX1	360168	1962	0.410	0.5272	Yes
29	FKBP5	2190048	1981	0.401	0.5326	Yes
30	HMGN2	3140091	2032	0.386	0.5359	Yes
31	RPL22	4070070	2118	0.364	0.5371	Yes
32	FKBP10	1340706	2135	0.358	0.5418	Yes
33	LMNB1	5890292 6020008	2211	0.341	0.5431	Yes
34	MYST3	5270500	2215	0.339	0.5483	Yes
35	TLE3	580040 4730121	2450	0.280	0.5400	Yes
36	POLR3E	380152	2456	0.279	0.5442	Yes
37	HSPD1	60097 2030451	2475	0.272	0.5475	Yes
38	PES1	2470427	2548	0.253	0.5475	Yes
39	IPO13	3870088	2551	0.253	0.5514	Yes
40	NR5A1	70707	2556	0.251	0.5552	Yes
41	SRP72	3990427	2628	0.233	0.5550	Yes
42	FHOD1	2680279	2637	0.230	0.5582	Yes
43	ATP6V0B	2810112	2683	0.221	0.5592	Yes
44	AMPD2	630093 1170070	2809	0.195	0.5555	No
45	KRTCAP2	5220040	2965	0.171	0.5498	No
46	GRK6	1500053	3131	0.148	0.5432	No
47	ARF6	3520026	3246	0.134	0.5391	No
48	GADD45G	2510142	3283	0.130	0.5392	No
49	CACNA1D	1740315 4730731	3293	0.128	0.5407	No
50	UBE1	4150139 7050463	3494	0.109	0.5316	No
51	SCYL1	5050717	3507	0.108	0.5326	No
52	AKAP10	2630504 5910577	3649	0.097	0.5265	No
53	TPM2	520735 3870390	3768	0.089	0.5215	No
54	NR1D1	2360471 770746 6590204	3969	0.078	0.5119	No
55	BARHL1	4210113	4104	0.071	0.5058	No
56	SLC38A5	540093	4214	0.066	0.5009	No
57	DLC1	1090632 6450594	4227	0.066	0.5013	No
58	SOCS5	3830398 7100093	4232	0.065	0.5021	No
59	ELOVL6	5340746	4236	0.065	0.5030	No
60	LIG3	2940300	4266	0.064	0.5024	No
61	TIMM9	2450484	4272	0.064	0.5031	No
62	B4GALT2	780037	4396	0.058	0.4974	No
63	NRAS	6900577	4430	0.057	0.4965	No
64	RNF128	1230300 5670273	4503	0.055	0.4934	No
65	CTSF	6100021	4548	0.054	0.4919	No
66	BAI2	380632 630113 6650170	4651	0.051	0.4872	No
67	MNT	4920575	4693	0.049	0.4857	No
68	RAD9A	110300 1940632 3990390 6040014	4765	0.047	0.4826	No
69	TESK2	6520524	4797	0.046	0.4817	No
70	RUNX2	1400193 4230215	4938	0.042	0.4748	No
71	KCNK5	4590504 6860687	5228	0.036	0.4596	No
72	TIAL1	4150048 6510605	5446	0.032	0.4484	No
73	ADPRHL1	4150133 6650300	5471	0.032	0.4476	No
74	MAPKAPK3	630520	5500	0.031	0.4466	No
75	DNMT3A	4050068 4810717	5501	0.031	0.4471	No
76	NXPH1	3870546	5525	0.031	0.4463	No
77	BMP2K	60541 5570504	5739	0.027	0.4352	No
78	PLAGL1	3190082 6200193	6141	0.022	0.4138	No
79	ETV1	70735 2940603 5080463	6177	0.022	0.4122	No
80	RTN4RL2	6450609	6534	0.018	0.3932	No
81	DNAJB9	460114	6538	0.018	0.3933	No
82	GPC3	6180735	6598	0.018	0.3904	No
83	RPL13A	2680519 5700142	6623	0.018	0.3894	No
84	GRIN2A	6550538	6663	0.017	0.3875	No
85	SFXN2	2650563 3140095 3830762 3870398	6892	0.016	0.3754	No
86	SOX12	1780037	6988	0.015	0.3705	No
87	LAP3	2570064	7137	0.014	0.3627	No
88	HS3ST3A1	2230497	7327	0.013	0.3526	No
89	ARRDC3	4610390	7551	0.011	0.3407	No
90	NKX2-2	4150731	7557	0.011	0.3406	No
91	ADAMTS17	6510739	7754	0.010	0.3302	No
92	GPS1	2470037 4760315 6200528 7100040	7803	0.010	0.3277	No
93	CTBP2	430309 3710079	7928	0.010	0.3211	No
94	NEUROD2	5290097	8306	0.008	0.3008	No
95	POGK	5290315	8410	0.008	0.2954	No
96	NRXN1	460408 5340270 6370066	8425	0.008	0.2947	No
97	JPH1	610739	8475	0.007	0.2922	No
98	PCDHA10	3830725	8522	0.007	0.2898	No
99	COL2A1	460446 3940500	8812	0.006	0.2742	No
100	ANGPT2	1230458 5720706 6040605	8928	0.006	0.2681	No
101	CHST11	6760546	9002	0.005	0.2642	No
102	SC5DL	6650390	9089	0.005	0.2596	No
103	CUGBP1	450292 510022 7050176 7050215	9112	0.005	0.2585	No
104	SLC12A5	1980692	9505	0.004	0.2373	No
105	ADAM10	3780156	9517	0.004	0.2368	No
106	HPCA	6860010	9522	0.004	0.2366	No
107	MTHFD1	5900398 6520427	9709	0.003	0.2266	No
108	FLT3	2640487	9850	0.003	0.2190	No
109	HOXB7	4540706 4610358	9975	0.003	0.2124	No
110	KIAA0427	1690435	10031	0.003	0.2094	No
111	ABCA1	6290156	10074	0.002	0.2072	No
112	CHRM1	4280619	10311	0.002	0.1944	No
113	PRKCE	5700053	10501	0.001	0.1842	No
114	RCL1	1980408 2680008 3800176	10519	0.001	0.1833	No
115	FGF11	840292	10594	0.001	0.1793	No
116	SEPT3	3830022 5290079	10725	0.001	0.1722	No
117	NEUROD6	4670731	10794	0.000	0.1685	No
118	ALX4	3870019	10815	0.000	0.1675	No
119	LIN28	6590672	10871	0.000	0.1645	No
120	B3GALT2	430136	11264	-0.001	0.1432	No
121	SGTB	460170	11307	-0.001	0.1410	No
122	EIF3S1	6130368 6770044	11330	-0.001	0.1398	No
123	HOXC13	4070722	11552	-0.002	0.1279	No
124	SLC17A2	870593 2810035	11607	-0.002	0.1250	No
125	NPM1	4730427	12090	-0.004	0.0989	No
126	NUP153	7000452	12121	-0.004	0.0973	No
127	EN2	7000368	12196	-0.004	0.0934	No
128	LHX9	2350112	12243	-0.004	0.0909	No
129	PLA2G4A	6380364	12253	-0.004	0.0905	No
130	POU3F1	3710022	12375	-0.005	0.0840	No
131	HHIP	6940438	12396	-0.005	0.0830	No
132	APOA5	6130471	12494	-0.005	0.0779	No
133	SCFD2	2480504	12697	-0.006	0.0670	No
134	STMN4	2900091	12782	-0.007	0.0626	No
135	NDUFS1	2650253	12920	-0.008	0.0552	No
136	ENPP6	110524 580563	13105	-0.009	0.0454	No
137	MCM8	6130743	13113	-0.009	0.0452	No
138	SNCAIP	4010551	13539	-0.013	0.0223	No
139	RBBP6	2320129	13716	-0.015	0.0130	No
140	PPARGC1B	3290114	13767	-0.015	0.0105	No
141	PLAG1	1450142 3870139 6520039	13805	-0.016	0.0088	No
142	XRN2	130603 1230113 4230309	14153	-0.021	-0.0097	No
143	ADCY3	2350347 3440242	14429	-0.029	-0.0242	No
144	SEMA3F	5420601 6770731	14473	-0.031	-0.0260	No
145	CDC14A	4050132	14547	-0.033	-0.0294	No
146	WEE1	3390070	14710	-0.041	-0.0376	No
147	TOP1	770471 4060632 6650324	14935	-0.054	-0.0489	No
148	ZZZ3	780133 2320239 2640452 5080706 6550341	14970	-0.055	-0.0499	No
149	HRH3	6180040	15059	-0.061	-0.0537	No
150	RAMP2	6860037	15205	-0.072	-0.0604	No
151	SEMA7A	2630239 5050593	15256	-0.075	-0.0619	No
152	PANK3	3060687	15331	-0.083	-0.0646	No
153	ZCCHC7	6510592	15496	-0.100	-0.0719	No
154	GADD45B	2350408	15818	-0.136	-0.0872	No
155	CLCN2	1940021	15981	-0.161	-0.0934	No
156	HRSP12	610136 2510133 4280561 2760047	15985	-0.162	-0.0911	No
157	BCL2	730132 1570736 2470138 3800044 4810037 5690068 5860504 6650164	15995	-0.163	-0.0890	No
158	PFN1	6130132	15998	-0.164	-0.0865	No
159	USP2	1190292 1240253 4850035	16094	-0.176	-0.0889	No
160	EIF4G1	4070446	16118	-0.180	-0.0873	No
161	ZHX2	2900452	16244	-0.206	-0.0908	No
162	PDK2	2690017	16619	-0.299	-0.1064	No
163	MAX	5220021	16704	-0.322	-0.1059	No
164	MXD4	4810113	16889	-0.375	-0.1099	No
165	PFKFB3	630706	17316	-0.539	-0.1246	No
166	SLC20A1	6420014	17461	-0.615	-0.1227	No
167	RXRB	1780040 5340438	17500	-0.629	-0.1148	No
168	HTF9C	3190048 4120132	17522	-0.642	-0.1058	No
169	GJA1	5220731	17586	-0.676	-0.0986	No
170	GNA13	4590102	17647	-0.709	-0.0907	No
171	U2AF2	450600 4670128 5420292	17707	-0.746	-0.0821	No
172	TEF	1050050 3120397 4060487	17981	-0.960	-0.0818	No
173	RPIA	780079	18022	-1.009	-0.0681	No
174	STAT3	460040 3710341	18039	-1.029	-0.0527	No
175	AP1GBP1	2510372	18042	-1.031	-0.0366	No
176	WBP2	3170128	18131	-1.163	-0.0231	No
177	RBM3	2360739 5700167	18232	-1.334	-0.0075	No
178	HBP1	2510102 3130010 4210619	18407	-1.792	0.0113	No