Details for gene set V$NKX61

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy_repos
Phenotype	phenotype_truncNotch_versus_normalThy.cls#truncNotch_versus_normalThy_repos
Upregulated in class	normalThy
GeneSet	V$NKX61_01
Enrichment Score (ES)	-0.6440042
Normalized Enrichment Score (NES)	-1.699124
Nominal p-value	0.0
FDR q-value	0.008479781
FWER p-Value	0.044

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LMNA	520471 1500075 3190167 4210020	152	2.286	0.0427	No
2	SSBP3	870717 1050377 7040551	357	1.583	0.0670	No
3	CXCL13	6290402	722	1.051	0.0707	No
4	PRKAG1	6450091	1656	0.503	0.0314	No
5	WNT8B	4560301	1835	0.444	0.0316	No
6	TBXAS1	5050053 6900286	2082	0.373	0.0266	No
7	TYRO3	3130193	2193	0.345	0.0284	No
8	SESN3	110687	2497	0.265	0.0179	No
9	STOML2	1940487	2746	0.206	0.0090	No
10	HESX1	4050746	3174	0.142	-0.0110	No
11	ZRANB1	510373 4540278	3245	0.134	-0.0118	No
12	NTNG2	1770438 6380408	3366	0.120	-0.0156	No
13	NR2F1	4120528 360402	3371	0.120	-0.0131	No
14	DTNA	1340600 1780731 2340278 2850132	3603	0.100	-0.0234	No
15	A2BP1	2370390 4590593 5550014	3723	0.091	-0.0278	No
16	HOXC6	3850133 4920736	3792	0.088	-0.0296	No
17	MAN1C1	730133 870398 2340044	4086	0.072	-0.0438	No
18	FOXP2	3520561 4150372 4760524	4262	0.064	-0.0519	No
19	AP3M2	6370474	4294	0.063	-0.0522	No
20	PLCD4	6450040	4316	0.061	-0.0519	No
21	POU3F4	870274	4364	0.059	-0.0531	No
22	UBE2C	6130017	4453	0.057	-0.0566	No
23	HSN2	610180	4506	0.055	-0.0582	No
24	GNAT2	2450433	4676	0.050	-0.0663	No
25	HOXC10	5360170	4718	0.049	-0.0674	No
26	GK2	6510736	4801	0.046	-0.0708	No
27	COL11A2	5130341	5073	0.040	-0.0846	No
28	HOXB8	3710450	5077	0.040	-0.0839	No
29	ODZ1	5050731	5278	0.035	-0.0939	No
30	DSG4	3990605 6400736	5571	0.030	-0.1091	No
31	ANXA10	4050750	5671	0.029	-0.1138	No
32	PDGFRA	2940332	5734	0.028	-0.1166	No
33	NHLH2	6200021	5844	0.026	-0.1219	No
34	HOXC4	1940193	5909	0.025	-0.1248	No
35	HABP2	5360541 6350273	6203	0.021	-0.1402	No
36	VAMP3	7100050	6559	0.018	-0.1590	No
37	CREB5	2320368	6567	0.018	-0.1590	No
38	PCSK2	360017 430528 5900619	6790	0.016	-0.1707	No
39	ZFPM2	460072	6800	0.016	-0.1708	No
40	SLC6A15	5290176 6040017	6847	0.016	-0.1729	No
41	MID1	4070114 4760458	6849	0.016	-0.1726	No
42	PHOX2B	5270075	6935	0.015	-0.1769	No
43	RAB3C	5420072	7024	0.014	-0.1813	No
44	SOX5	2370576 2900167 3190128 5050528	7032	0.014	-0.1814	No
45	EN1	5360168 7050025	7312	0.013	-0.1962	No
46	EYA1	1450278 5220390	7412	0.012	-0.2013	No
47	OTP	2630070	7497	0.012	-0.2056	No
48	ERG	50154 1770739	7552	0.011	-0.2083	No
49	TBX5	2900132 6370484	7553	0.011	-0.2080	No
50	P518	3610435	7556	0.011	-0.2079	No
51	SOX18	2320086	7648	0.011	-0.2126	No
52	C1QTNF7	2970619	7750	0.010	-0.2178	No
53	ESRRG	4010181	7822	0.010	-0.2215	No
54	LRRTM1	1690324	7909	0.010	-0.2259	No
55	GAD2	1400088	8134	0.009	-0.2378	No
56	SLC6A4	2230372	8248	0.008	-0.2438	No
57	NEUROD2	5290097	8306	0.008	-0.2467	No
58	ACMSD	1450538	8429	0.008	-0.2531	No
59	PTPN22	1690647 7100239	8493	0.007	-0.2564	No
60	BAI3	940692	8567	0.007	-0.2602	No
61	ELP4	1230576	8737	0.006	-0.2692	No
62	ERMAP	780156	8774	0.006	-0.2710	No
63	LHX6	2360731 3360397	8832	0.006	-0.2739	No
64	USF2	3870368 5570348 6940039	8882	0.006	-0.2765	No
65	RIMS2	670725	8922	0.006	-0.2785	No
66	ANGPT2	1230458 5720706 6040605	8928	0.006	-0.2786	No
67	MYF6	2690576	8948	0.006	-0.2795	No
68	PRDM13	1430022	8963	0.006	-0.2801	No
69	TCL1A	3420367	9202	0.005	-0.2929	No
70	LGI1	1850020	9477	0.004	-0.3077	No
71	GABRB2	870059	9843	0.003	-0.3274	No
72	PURA	3870156	9895	0.003	-0.3301	No
73	PLCB1	2570050 7100102	10158	0.002	-0.3442	No
74	ARX	6900504	10218	0.002	-0.3474	No
75	LMO1	3170528	10605	0.001	-0.3683	No
76	PPARGC1A	4670040	10674	0.001	-0.3719	No
77	HOXA11	6980133	10713	0.001	-0.3740	No
78	NPR3	1580239	10768	0.000	-0.3769	No
79	MYT1	6770524	10771	0.000	-0.3770	No
80	NEUROD6	4670731	10794	0.000	-0.3782	No
81	SATB2	2470181	10987	-0.000	-0.3886	No
82	BOC	5270348	11135	-0.001	-0.3965	No
83	KLF15	4230164	11199	-0.001	-0.3999	No
84	IRX4	1980102	11344	-0.001	-0.4077	No
85	FGFR2	4670601 5570402 6940377	11419	-0.001	-0.4117	No
86	FGF7	5390484	11438	-0.002	-0.4126	No
87	NEUROG1	380341	11713	-0.002	-0.4274	No
88	HSD17B2	3800541	11971	-0.003	-0.4412	No
89	CLOCK	1410070 2940292 3390075	12130	-0.004	-0.4497	No
90	FGF12	1740446 2360037	12167	-0.004	-0.4516	No
91	MLSTD1	3710184	12299	-0.005	-0.4586	No
92	WNT7A	1170315	12347	-0.005	-0.4610	No
93	SLC26A7	1850398 3830377	12426	-0.005	-0.4651	No
94	KCNJ16	4780273	12725	-0.007	-0.4811	No
95	SDPR	3360292	12957	-0.008	-0.4935	No
96	PTPRD	520008 3120097	12980	-0.008	-0.4945	No
97	SLITRK3	5910041	13015	-0.008	-0.4961	No
98	CDKL5	2450070	13081	-0.009	-0.4995	No
99	HOXD8	3710156	13095	-0.009	-0.5000	No
100	KCNIP2	60088 1780324	13110	-0.009	-0.5005	No
101	DMP1	4760398	13185	-0.009	-0.5043	No
102	CGA	630403	13324	-0.011	-0.5116	No
103	ALDH1A2	2320301	13414	-0.011	-0.5161	No
104	MDGA1	1170139	13439	-0.012	-0.5172	No
105	ITGA7	1230739	13481	-0.012	-0.5191	No
106	PRRX1	4120193 4480390	13546	-0.013	-0.5223	No
107	RARB	430139 1410138	13691	-0.014	-0.5298	No
108	APOBEC2	1690520	13877	-0.017	-0.5394	No
109	NSD1	4560519 4780672	14165	-0.022	-0.5545	No
110	FUT11	6040692	14181	-0.022	-0.5548	No
111	NR4A3	2900021 5860095 5910039	14428	-0.029	-0.5675	No
112	RHOBTB3	4010687	14611	-0.036	-0.5766	No
113	SV2A	1450039 5570685	14632	-0.037	-0.5768	No
114	FHL1	60278	14840	-0.049	-0.5869	No
115	AOC2	520348 3120008	14843	-0.049	-0.5860	No
116	SLC12A6	610278 1980035 5340671	14900	-0.052	-0.5878	No
117	ELF4	4850193	14976	-0.056	-0.5907	No
118	RNF4	580286 1400152	15327	-0.083	-0.6078	No
119	TCF4	520021	15471	-0.097	-0.6134	No
120	MBNL2	3450707	15577	-0.109	-0.6166	No
121	MYO10	3830576 5570092	15591	-0.111	-0.6149	No
122	ZADH2	520438	15678	-0.120	-0.6169	No
123	RAB5B	130397 1980273 6900731	15709	-0.123	-0.6157	No
124	KLHL5	3060484 6400292	15750	-0.129	-0.6150	No
125	CUL3	1850520	15767	-0.131	-0.6130	No
126	ZIC4	1500082	15904	-0.148	-0.6170	No
127	FOXP3	940707 1850692	16316	-0.219	-0.6344	No
128	CHCHD7	6620692	16354	-0.227	-0.6314	No
129	AMMECR1	3800435	16463	-0.254	-0.6315	No
130	CDC2L2	1400671 5290168	16694	-0.317	-0.6369	Yes
131	HNRPA0	2680048	16695	-0.317	-0.6298	Yes
132	KCNN3	6520600 6420138	16710	-0.325	-0.6234	Yes
133	NCOR1	3710132	16902	-0.380	-0.6252	Yes
134	ARID5A	2450133	16961	-0.402	-0.6194	Yes
135	CHD2	4070039	17007	-0.417	-0.6126	Yes
136	LARGE	6940068	17034	-0.427	-0.6045	Yes
137	PLRG1	4480735	17094	-0.444	-0.5978	Yes
138	FLI1	3990142	17232	-0.505	-0.5939	Yes
139	NDUFA4	6860364	17330	-0.547	-0.5870	Yes
140	CLK2	510079 2630736	17390	-0.575	-0.5774	Yes
141	SLC20A1	6420014	17461	-0.615	-0.5674	Yes
142	ATP2A2	1090075 3990279	17491	-0.626	-0.5551	Yes
143	HOXA7	5910152	17605	-0.687	-0.5459	Yes
144	GATA3	6130068	17815	-0.824	-0.5388	Yes
145	RPA3	5700136	17876	-0.871	-0.5226	Yes
146	PPP3CB	6020156	17890	-0.883	-0.5036	Yes
147	TRIM8	6130441	18037	-1.028	-0.4886	Yes
148	SH3BGRL3	1850750	18049	-1.032	-0.4662	Yes
149	TOB1	4150138	18063	-1.050	-0.4435	Yes
150	SOX4	2260091	18158	-1.199	-0.4218	Yes
151	MARCKS	7040450	18194	-1.252	-0.3958	Yes
152	ZFP36L1	2510138 4120048	18473	-2.052	-0.3651	Yes
153	HSD11B1	450066 5550408	18477	-2.066	-0.3192	Yes
154	DUSP6	5910286 7100070	18498	-2.236	-0.2704	Yes
155	CCND2	5340167	18568	-2.711	-0.2137	Yes
156	TLE4	1450064 1500519	18569	-2.751	-0.1524	Yes
157	ETS2	360451	18573	-2.835	-0.0893	Yes
158	BCL6	940100	18610	-4.108	0.0003	Yes