Details for gene set V$CRX

Table: GSEA Results Summary

Dataset	Set_03_truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy.phenotype_truncNotch_versus_normalThy.cls #truncNotch_versus_normalThy_repos
Phenotype	phenotype_truncNotch_versus_normalThy.cls#truncNotch_versus_normalThy_repos
Upregulated in class	truncNotch
GeneSet	V$CRX_Q4
Enrichment Score (ES)	0.52244544
Normalized Enrichment Score (NES)	1.2728026
Nominal p-value	0.03748126
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TKT	6590064 6860039	0	8.890	0.1530	Yes
2	TCF7	3800736 5390181	60	3.131	0.2036	Yes
3	TNNT1	3360671	66	3.049	0.2558	Yes
4	ACAA2	1570347 2360324 6130139	91	2.687	0.3008	Yes
5	CDKN2C	5050750 5130148	102	2.582	0.3447	Yes
6	HIST1H4C	5570528	172	2.178	0.3784	Yes
7	FIBCD1	1500500	182	2.094	0.4139	Yes
8	ETV5	110017	222	1.935	0.4451	Yes
9	DAP	5270056	223	1.935	0.4784	Yes
10	RAB33A	6590195	284	1.732	0.5050	Yes
11	MSH5	1340019 4730333	562	1.254	0.5115	Yes
12	ANXA11	6370128	699	1.064	0.5224	Yes
13	ESM1	1410594	1200	0.718	0.5077	No
14	PRKAG1	6450091	1656	0.503	0.4916	No
15	HMGN2	3140091	2032	0.386	0.4779	No
16	BMI1	3830026 2630204	2123	0.361	0.4793	No
17	TRIP10	460438	2368	0.299	0.4712	No
18	ACADVL	6040403	2513	0.261	0.4679	No
19	WNT6	4570364	3099	0.152	0.4388	No
20	NR2E1	4730288	3140	0.147	0.4391	No
21	KCNA1	2030594	3165	0.143	0.4403	No
22	RUNX3	3800546	3198	0.140	0.4410	No
23	MERTK	6420056	3326	0.125	0.4362	No
24	RPS6KA3	1980707	3335	0.123	0.4379	No
25	POLR2A	5220647	3362	0.120	0.4386	No
26	NR2F1	4120528 360402	3371	0.120	0.4402	No
27	POLD4	2320082	3491	0.109	0.4356	No
28	ZFP36L2	510180	3517	0.107	0.4361	No
29	MIP	6520333	3704	0.092	0.4276	No
30	HOXC6	3850133 4920736	3792	0.088	0.4244	No
31	PGF	4810593	3817	0.086	0.4246	No
32	UBXD3	5050193	4220	0.066	0.4039	No
33	DLC1	1090632 6450594	4227	0.066	0.4047	No
34	LRRTM4	5910100	4415	0.058	0.3956	No
35	ZBTB4	6450441	4449	0.057	0.3947	No
36	BDKRB1	730592	4639	0.051	0.3854	No
37	NOS1	5860129	4766	0.047	0.3794	No
38	FLNC	2360048 5050270	4791	0.046	0.3789	No
39	HOXA3	3610632 6020358	4940	0.042	0.3716	No
40	CAMK2A	1740333 1940112 4150292	5000	0.041	0.3691	No
41	HOXB3	520292	5339	0.034	0.3513	No
42	FOXB1	4920270 5290463	5502	0.031	0.3431	No
43	DSG4	3990605 6400736	5571	0.030	0.3399	No
44	RIMS1	5670022	5901	0.025	0.3225	No
45	HOXC4	1940193	5909	0.025	0.3225	No
46	GPR21	6520152	5952	0.024	0.3207	No
47	PROK2	540538	5965	0.024	0.3204	No
48	FZD4	1580520	6076	0.023	0.3149	No
49	TULP1	430048 1230156	6129	0.022	0.3124	No
50	CASK	2340215 3290576 6770215	6245	0.021	0.3065	No
51	SLC5A2	4480148 6400242	6416	0.019	0.2977	No
52	CREB5	2320368	6567	0.018	0.2898	No
53	TNFSF4	3940594	6679	0.017	0.2841	No
54	GLRA1	610575	6722	0.017	0.2821	No
55	NEO1	1990154	6875	0.016	0.2741	No
56	VASP	7050500	7056	0.014	0.2646	No
57	TYRP1	3170450 5690204 6290092	7246	0.013	0.2546	No
58	HOXC5	1580017	7434	0.012	0.2447	No
59	ERG	50154 1770739	7552	0.011	0.2385	No
60	E2F3	50162 460180	7560	0.011	0.2383	No
61	GDF7	6370301	7619	0.011	0.2354	No
62	SLC13A4	2940541	7664	0.011	0.2332	No
63	ESRRG	4010181	7822	0.010	0.2248	No
64	EGFL6	3940181	7891	0.010	0.2213	No
65	CTBP2	430309 3710079	7928	0.010	0.2195	No
66	ENTPD1	7050139	8303	0.008	0.1994	No
67	MSX2	1570022	8343	0.008	0.1974	No
68	SLC1A7	1990181	8344	0.008	0.1975	No
69	LIFR	3360068 3830102	8437	0.008	0.1927	No
70	OTOP3	5360685	8537	0.007	0.1874	No
71	POU6F2	5270451	8542	0.007	0.1873	No
72	PITX1	6550541	8655	0.007	0.1814	No
73	IRX5	2630494	8681	0.007	0.1801	No
74	BTG4	4060020	8694	0.007	0.1796	No
75	HR	2690095 6200300	8757	0.006	0.1763	No
76	PRDM13	1430022	8963	0.006	0.1653	No
77	PCSK1	2350148	9096	0.005	0.1582	No
78	SOX15	2470603	9140	0.005	0.1560	No
79	GRID2	2680242	9256	0.005	0.1498	No
80	LPHN2	4480010	9376	0.004	0.1434	No
81	HOXD10	6100039	9394	0.004	0.1426	No
82	NKX6-1	6040731	9460	0.004	0.1391	No
83	BHLHB5	6510520	9463	0.004	0.1391	No
84	ANGPTL2	6980152 6760162	9498	0.004	0.1373	No
85	SLC12A5	1980692	9505	0.004	0.1371	No
86	GUCY2F	2450309	9605	0.004	0.1318	No
87	RTN2	4480538	9656	0.004	0.1291	No
88	DPYD	6110095	9687	0.004	0.1276	No
89	NRXN3	1400546 3360471	9768	0.003	0.1233	No
90	SLC6A20	5690537	9771	0.003	0.1232	No
91	PURA	3870156	9895	0.003	0.1166	No
92	PAX6	1190025	9898	0.003	0.1165	No
93	AMHR2	2810180 3360300	9992	0.003	0.1115	No
94	DMD	1740041 3990332	10112	0.002	0.1051	No
95	MAB21L1	1450634 1580092	10316	0.002	0.0941	No
96	DMRT2	2630068	10485	0.001	0.0851	No
97	PALM2	4120068 7100398	10531	0.001	0.0826	No
98	PITX2	870537 2690139	10667	0.001	0.0753	No
99	BNC2	4810603	10701	0.001	0.0735	No
100	LRRC21	990731	10822	0.000	0.0670	No
101	LIN28	6590672	10871	0.000	0.0644	No
102	SATB2	2470181	10987	-0.000	0.0582	No
103	ATRNL1	6980368	11050	-0.000	0.0548	No
104	ABCC6	6900168	11156	-0.001	0.0492	No
105	MYO3B	1400092	11158	-0.001	0.0491	No
106	GNB3	1230167	11170	-0.001	0.0485	No
107	FOXA1	3710609	11195	-0.001	0.0472	No
108	FGF14	2630390 3520075 6770048	11417	-0.001	0.0353	No
109	EYA4	5360286	11418	-0.001	0.0353	No
110	FGF7	5390484	11438	-0.002	0.0343	No
111	SST	6590142	11525	-0.002	0.0297	No
112	EFS	110288	11788	-0.003	0.0155	No
113	FLRT1	4540348	11835	-0.003	0.0131	No
114	GRIN2B	3800333	11884	-0.003	0.0105	No
115	CRYGS	2680398	11955	-0.003	0.0068	No
116	RAX	4590600	11965	-0.003	0.0063	No
117	ATP6V0A4	360100	12015	-0.004	0.0037	No
118	SIX3	3830402	12017	-0.004	0.0038	No
119	NLGN1	5670278	12288	-0.005	-0.0108	No
120	NR1H4	2450176	12390	-0.005	-0.0162	No
121	GAP43	3130504	12528	-0.006	-0.0235	No
122	ERBB4	4610400 4810017	12582	-0.006	-0.0263	No
123	TCF1	5390022	12587	-0.006	-0.0264	No
124	AGA	6350292	12632	-0.006	-0.0287	No
125	PAX7	6860593	12693	-0.006	-0.0319	No
126	TLX3	510619	13035	-0.008	-0.0502	No
127	KCNIP2	60088 1780324	13110	-0.009	-0.0541	No
128	SLC6A5	870121	13124	-0.009	-0.0546	No
129	JUB	5860711 5900500	13180	-0.009	-0.0574	No
130	ADAMTSL1	2970092	13249	-0.010	-0.0610	No
131	WNT3A	6350348	13276	-0.010	-0.0622	No
132	MEOX2	6400288	13392	-0.011	-0.0682	No
133	JARID2	6290538	13395	-0.011	-0.0682	No
134	MEIS1	1400575	13430	-0.012	-0.0698	No
135	MDGA1	1170139	13439	-0.012	-0.0700	No
136	CLDN2	580053	13507	-0.012	-0.0735	No
137	PRRX1	4120193 4480390	13546	-0.013	-0.0753	No
138	LEMD1	3990132 5720187	13759	-0.015	-0.0865	No
139	PDE4D	2470528 6660014	13911	-0.017	-0.0944	No
140	ROBO3	6550408	13920	-0.017	-0.0946	No
141	STAT5B	6200026	13947	-0.018	-0.0957	No
142	MOAP1	580537	14173	-0.022	-0.1075	No
143	GPX1	4150093	14266	-0.024	-0.1121	No
144	NOTCH2	2570397	14297	-0.025	-0.1133	No
145	SOAT2	1230324 3610603	14386	-0.028	-0.1176	No
146	TNFSF11	6350204	14396	-0.028	-0.1176	No
147	JMJD1C	940575 2120025	14430	-0.029	-0.1189	No
148	PSCD2	3870113	14501	-0.032	-0.1221	No
149	AKAP2	5550347	14757	-0.044	-0.1352	No
150	ZNF385	450176 4810358	14910	-0.053	-0.1425	No
151	THRAP1	2470121	15024	-0.059	-0.1476	No
152	ABLIM1	580170 3710338 6520504	15171	-0.069	-0.1544	No
153	RORA	380164 5220215	15187	-0.071	-0.1540	No
154	LTBP1	780035 2100746 2760402 3780551 6550184 6860193	15247	-0.075	-0.1559	No
155	CLASP1	6860279	15375	-0.088	-0.1612	No
156	NCOA2	940347 2850725	15436	-0.094	-0.1629	No
157	IGSF3	6450524	15555	-0.107	-0.1674	No
158	LDB2	5670441 6110170	15830	-0.138	-0.1799	No
159	TCF7L2	2190348 5220113	15855	-0.142	-0.1788	No
160	CNOT4	2320242 6760706	15894	-0.148	-0.1783	No
161	BTRC	3170131	16035	-0.169	-0.1830	No
162	NR6A1	4010347	16300	-0.216	-0.1936	No
163	RG9MTD2	6520100	16414	-0.239	-0.1956	No
164	AMMECR1	3800435	16463	-0.254	-0.1939	No
165	CHORDC1	6650577	16499	-0.264	-0.1912	No
166	BCL11A	6860369	16672	-0.312	-0.1952	No
167	TIGD2	7100129	16682	-0.315	-0.1903	No
168	CHD2	4070039	17007	-0.417	-0.2007	No
169	DCTN1	1450056 6590022	17070	-0.437	-0.1965	No
170	NFIX	2450152	17139	-0.468	-0.1921	No
171	HIST1H1C	3870603	17181	-0.484	-0.1860	No
172	ATP1B3	6040128	17549	-0.657	-0.1946	No
173	SRPK2	6380341	17799	-0.805	-0.1943	No
174	RPA3	5700136	17876	-0.871	-0.1834	No
175	DEF6	840593	18019	-1.006	-0.1738	No
176	SSBP2	2260725 2900400 4730711	18425	-1.846	-0.1640	No
177	KCNH2	1170451	18487	-2.154	-0.1302	No
178	SATB1	5670154	18523	-2.380	-0.0912	No
179	TLE4	1450064 1500519	18569	-2.751	-0.0463	No
180	ETS2	360451	18573	-2.835	0.0023	No