Details for gene set V$E12

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch.phenotype_absentNotch_versus_truncNotch.cls #absentNotch_versus_truncNotch_repos
Phenotype	phenotype_absentNotch_versus_truncNotch.cls#absentNotch_versus_truncNotch_repos
Upregulated in class	truncNotch
GeneSet	V$E12_Q6
Enrichment Score (ES)	-0.5007068
Normalized Enrichment Score (NES)	-1.279937
Nominal p-value	0.038817007
FDR q-value	0.92339414
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	POLR1D	70082 450750 6040458	25	2.240	0.0659	No
2	ELMO1	110338 1190451 1580148 1850609 2350706 2370369 2450129 3840113 4150184 4280079 6290066 6380435 6770494 7100180	139	1.334	0.0999	No
3	MFNG	1770242 4280348	472	0.786	0.1055	No
4	RRAGC	5910348	579	0.703	0.1208	No
5	RUNX1	3840711	697	0.634	0.1335	No
6	NEDD4L	6380368	953	0.516	0.1352	No
7	OSR1	1500025	1102	0.459	0.1410	No
8	WNT6	4570364	1439	0.350	0.1332	No
9	LNX2	3130025	1621	0.300	0.1324	No
10	GRB2	6650398	1627	0.299	0.1411	No
11	GRB7	2100471	1648	0.292	0.1488	No
12	SLC23A2	6660722	1712	0.276	0.1537	No
13	EGLN1	2480180 3120253 6110195	1804	0.256	0.1564	No
14	NUP88	2510044 6760180	1994	0.211	0.1525	No
15	PLAGL2	1770148	2022	0.206	0.1572	No
16	CORO2B	2340035 4850390	2074	0.196	0.1603	No
17	TNFSF13	2650170	2140	0.184	0.1624	No
18	KCNN3	6520600 6420138	2488	0.129	0.1474	No
19	ADAM12	3390132 4070347	3005	0.080	0.1218	No
20	RIN1	510593	3035	0.078	0.1226	No
21	FUT8	1340068 2340056	3140	0.070	0.1191	No
22	CAMK2A	1740333 1940112 4150292	3239	0.064	0.1157	No
23	SORT1	1850242 2320632 3870537	3253	0.064	0.1169	No
24	TNFRSF21	6380100	3403	0.054	0.1104	No
25	SCG2	5670438 130671	3646	0.042	0.0986	No
26	NTRK3	4050687 4070167 4610026 6100484	3795	0.036	0.0916	No
27	PIM2	840136 5720692 7100577	3822	0.034	0.0913	No
28	DSCAM	1780050 2450731 2810438	3994	0.029	0.0829	No
29	HIF3A	2630053 2680102 6450364	4010	0.028	0.0829	No
30	ITGA6	3830129	4052	0.027	0.0815	No
31	KCNK12	4070072	4309	0.021	0.0682	No
32	USP2	1190292 1240253 4850035	4326	0.021	0.0680	No
33	SSH2	360056	4364	0.020	0.0666	No
34	CXCL14	840114 6450324	4476	0.018	0.0611	No
35	PCDH15	7000438	4540	0.017	0.0582	No
36	NFATC4	2470735	4601	0.016	0.0554	No
37	HR	2690095 6200300	4622	0.016	0.0548	No
38	CANX	4760402	4684	0.015	0.0519	No
39	RAPGEF4	6100563	4717	0.015	0.0506	No
40	WDR20	1240373	4756	0.014	0.0490	No
41	FYN	2100468 4760520 4850687	4821	0.014	0.0459	No
42	SIM1	1770332	4917	0.012	0.0412	No
43	SLC24A3	5080707	5037	0.011	0.0351	No
44	RAB26	5910025	5099	0.011	0.0321	No
45	SORCS2	6350520	5221	0.010	0.0258	No
46	UNC13B	130735	5434	0.009	0.0146	No
47	PACSIN3	4540369 4540400 5360037 6940129	5459	0.008	0.0135	No
48	GPR37	2320093	5660	0.007	0.0029	No
49	KCNB1	3610035	5690	0.007	0.0016	No
50	HSD11B2	5900053	5801	0.007	-0.0042	No
51	SLC12A5	1980692	6126	0.005	-0.0216	No
52	DLL1	1770377	6187	0.005	-0.0247	No
53	CHRND	840403 2260670	6264	0.005	-0.0287	No
54	TRIM23	580168 6510672	6304	0.005	-0.0307	No
55	WTAP	4010176	6560	0.004	-0.0444	No
56	GATA2	6590280	6661	0.004	-0.0497	No
57	AP1S2	780279 4280707	6750	0.003	-0.0544	No
58	NTRK2	6220463	6876	0.003	-0.0611	No
59	TGFB3	1070041	6932	0.003	-0.0640	No
60	NBL1	2480021	7096	0.002	-0.0727	No
61	CPA4	3610100	7261	0.002	-0.0816	No
62	ASB14	5860427	7400	0.001	-0.0890	No
63	NHLH1	6100452	7527	0.001	-0.0958	No
64	BMP6	2100128	7649	0.001	-0.1024	No
65	SOX17	5270551	7672	0.001	-0.1035	No
66	PPARA	2060026	7863	0.000	-0.1138	No
67	CHRDL1	1580037 6380204	7867	0.000	-0.1140	No
68	LAMA5	2680722	7898	0.000	-0.1156	No
69	COL4A4	1050541	8275	-0.001	-0.1360	No
70	TCF2	870338 5050632	8657	-0.002	-0.1566	No
71	GPM6B	6220458	8665	-0.002	-0.1569	No
72	ANKRD2	6590427	8672	-0.002	-0.1572	No
73	PTPRJ	4010707	9060	-0.003	-0.1781	No
74	KLHL13	6590731	9139	-0.003	-0.1822	No
75	MTSS1	780435 2370114	9195	-0.003	-0.1851	No
76	SFTPC	3290133	9206	-0.003	-0.1856	No
77	DLL3	4010093	9233	-0.003	-0.1869	No
78	FOXI1	3710095 6620195	9240	-0.003	-0.1871	No
79	GRIA1	1340152 3780750 4920440	9243	-0.003	-0.1871	No
80	ARVCF	2190537	9295	-0.003	-0.1898	No
81	TEAD4	1850239 6380519	9396	-0.004	-0.1951	No
82	TREX2	4920707	9484	-0.004	-0.1997	No
83	ANK2	6510546	9498	-0.004	-0.2003	No
84	GFAP	2060092	9916	-0.005	-0.2227	No
85	MYOZ3	1990138	10153	-0.006	-0.2354	No
86	CPZ	70193	10231	-0.006	-0.2393	No
87	NR4A1	6290161	10252	-0.006	-0.2402	No
88	ARHGEF12	3990195	10289	-0.006	-0.2420	No
89	MT3	1450537	10331	-0.007	-0.2440	No
90	RTN4RL2	6450609	10387	-0.007	-0.2468	No
91	EIF2C1	6900551	10589	-0.007	-0.2575	No
92	FGF11	840292	10597	-0.007	-0.2576	No
93	NEGR1	1940731 5130170	10604	-0.008	-0.2577	No
94	MYH14	4010017	10775	-0.008	-0.2667	No
95	ZNF205	6900022	10884	-0.008	-0.2723	No
96	SOST	1170195	11164	-0.009	-0.2872	No
97	ODC1	5670168	11181	-0.010	-0.2877	No
98	GDPD2	7000040	11240	-0.010	-0.2906	No
99	NPEPPS	2630731	11282	-0.010	-0.2925	No
100	DNAJB5	2900215	11348	-0.010	-0.2957	No
101	DOC2A	6020121	11354	-0.010	-0.2957	No
102	CCNL2	6520167	11495	-0.011	-0.3029	No
103	CHST9	4560092	11588	-0.012	-0.3076	No
104	MTUS1	780348 4920609	11715	-0.012	-0.3140	No
105	ALDH1A2	2320301	11992	-0.014	-0.3286	No
106	IRX6	4590025	12046	-0.014	-0.3310	No
107	ROBO3	6550408	12090	-0.015	-0.3329	No
108	CALB1	460070	12308	-0.016	-0.3442	No
109	CDH5	5340487	12312	-0.016	-0.3439	No
110	CALN1	3610722	12313	-0.016	-0.3434	No
111	FSCN2	1230039	12379	-0.017	-0.3464	No
112	POU2F3	2030601	12543	-0.018	-0.3547	No
113	RASSF2	2480079 5720546	12584	-0.018	-0.3563	No
114	COL4A3	5910075	12595	-0.019	-0.3563	No
115	NEURL	5390538	12723	-0.020	-0.3626	No
116	CFL1	2340735	12815	-0.021	-0.3669	No
117	GGN	1410528 4210082 5290170	12839	-0.021	-0.3675	No
118	PRKAG2	2340100	13045	-0.023	-0.3779	No
119	DNMT3A	4050068 4810717	13067	-0.024	-0.3784	No
120	BRUNOL4	4490452 5080451	13130	-0.024	-0.3810	No
121	CYP26A1	380022 2690600	13209	-0.025	-0.3845	No
122	MDGA1	1170139	13286	-0.026	-0.3878	No
123	NOL4	5050446 5360519	13500	-0.030	-0.3984	No
124	ITGB4	1740021 3840482	14014	-0.039	-0.4251	No
125	CDH2	520435 2450451 2760025 6650477	14128	-0.042	-0.4299	No
126	TNNC2	3840079	14146	-0.043	-0.4296	No
127	PLEC1	6520292 50500 380075 1570088 2510692 2630497 2680017 2900746 4560497 4850376 6290398 7040471	14176	-0.044	-0.4298	No
128	PHACTR3	3850435 5900445	14182	-0.044	-0.4288	No
129	INVS	4200632 6620528	14205	-0.044	-0.4287	No
130	EYA3	1580195 6510632	14256	-0.046	-0.4300	No
131	LRP5	2100397 3170484	14393	-0.049	-0.4359	No
132	SYT4	5080193	14506	-0.053	-0.4404	No
133	GJB2	5900609 6200487	14700	-0.059	-0.4491	No
134	HMGN2	3140091	14721	-0.060	-0.4484	No
135	ACTN3	3140541 6480598	14780	-0.062	-0.4497	No
136	HOXB7	4540706 4610358	14814	-0.063	-0.4496	No
137	SEMA3F	5420601 6770731	14902	-0.067	-0.4523	No
138	PLCB3	4670402	14955	-0.069	-0.4530	No
139	IGSF8	1580592	14984	-0.071	-0.4524	No
140	FGF8	6350504	14985	-0.071	-0.4503	No
141	GPD1	2480095	15023	-0.073	-0.4501	No
142	CAMK1D	1660100 2350309	15194	-0.082	-0.4568	No
143	IGFBP5	2360592	15461	-0.100	-0.4683	No
144	TPM3	670600 3170296 5670167 6650471	15515	-0.104	-0.4680	No
145	CORO2A	3840605 6620390	15641	-0.116	-0.4713	No
146	CENTG3	2470079 4610092 5050170	15695	-0.122	-0.4705	No
147	POFUT1	1570458	15773	-0.129	-0.4708	No
148	CNNM2	2650100	16080	-0.169	-0.4823	No
149	ARHGAP24	540278 4540025	16219	-0.186	-0.4842	No
150	CENTB1	2120093	16292	-0.197	-0.4822	No
151	TNFAIP1	6940593	16414	-0.216	-0.4823	No
152	LRP10	1580128	16444	-0.220	-0.4772	No
153	SIPA1	5220687	16449	-0.220	-0.4708	No
154	STC2	4920601	16621	-0.244	-0.4728	No
155	SASH1	4070270	17029	-0.314	-0.4854	No
156	CRELD1	2060253	17312	-0.373	-0.4895	Yes
157	PSTPIP1	3190156	17411	-0.399	-0.4828	Yes
158	ARID5A	2450133	17414	-0.400	-0.4709	Yes
159	PPP1R9B	3130619	17416	-0.400	-0.4590	Yes
160	SLC37A4	6400079	17529	-0.435	-0.4520	Yes
161	SMAD3	6450671	17586	-0.454	-0.4414	Yes
162	DEF6	840593	17636	-0.469	-0.4300	Yes
163	ELOVL1	2450019 4760138 5340685	17672	-0.481	-0.4174	Yes
164	PTK2B	4730411	17741	-0.505	-0.4059	Yes
165	SELL	1190500	17889	-0.579	-0.3965	Yes
166	GFRA1	3610152	17937	-0.604	-0.3810	Yes
167	PPOX	2640678 3850102	18005	-0.646	-0.3652	Yes
168	HMGA1	6580408	18109	-0.743	-0.3485	Yes
169	AIG1	2450091	18292	-0.956	-0.3296	Yes
170	TTC17	2470440	18366	-1.089	-0.3009	Yes
171	IGF2	6510020	18425	-1.234	-0.2670	Yes
172	HEYL	5860528	18454	-1.339	-0.2283	Yes
173	GNAS	630441 1850373 4050152	18457	-1.366	-0.1874	Yes
174	ENO3	5270136	18458	-1.372	-0.1461	Yes
175	RANGAP1	2320593 6650601	18470	-1.439	-0.1035	Yes
176	CKM	1450524	18529	-1.841	-0.0514	Yes
177	HES6	540411 6550504	18532	-1.866	0.0046	Yes