Details for gene set REACTOME_GENE

Table: GSEA Results Summary

Dataset	Set_03_absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy.phenotype_absentNotch_versus_normalThy.cls #absentNotch_versus_normalThy_repos
Phenotype	phenotype_absentNotch_versus_normalThy.cls#absentNotch_versus_normalThy_repos
Upregulated in class	absentNotch
GeneSet	REACTOME_GENE_EXPRESSION
Enrichment Score (ES)	0.67191744
Normalized Enrichment Score (NES)	1.5949311
Nominal p-value	0.0
FDR q-value	0.04102526
FWER p-Value	0.399

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RPL38	70040 4060138 6200601	2	7.446	0.1142	Yes
2	SFRS2	50707 380593	63	3.079	0.1583	Yes
3	RPL27A	3130451 110195 6840494	72	2.999	0.2039	Yes
4	EIF2S2	770095 2810487	214	1.852	0.2247	Yes
5	RBM5	3520402 5270121	272	1.602	0.2462	Yes
6	TXNL4A	4120286 6510242	285	1.576	0.2698	Yes
7	METTL3	360497	299	1.541	0.2927	Yes
8	AARS	1570279 2370136	302	1.539	0.3163	Yes
9	U2AF2	450600 4670128 5420292	459	1.236	0.3268	Yes
10	EIF4A1	1990341 2810300	469	1.223	0.3451	Yes
11	ETF1	6770075	472	1.218	0.3637	Yes
12	U2AF1	5130292	483	1.190	0.3814	Yes
13	RARS	380390	485	1.187	0.3996	Yes
14	EIF2B2	4290048	490	1.174	0.4174	Yes
15	SFRS6	60224	529	1.115	0.4325	Yes
16	POLR2E	2900348 3360348	562	1.082	0.4474	Yes
17	CCAR1	3190092	682	0.940	0.4554	Yes
18	EIF4B	5390563 5270577	688	0.933	0.4694	Yes
19	CCNH	3190347	710	0.918	0.4824	Yes
20	NARS	1660722	729	0.900	0.4952	Yes
21	RPS3A	2470086	731	0.899	0.5090	Yes
22	EIF5	6380750	736	0.893	0.5225	Yes
23	RPS19	5860066	739	0.891	0.5361	Yes
24	NUP93	2190273	782	0.852	0.5469	Yes
25	TCEB1	1170619	792	0.846	0.5594	Yes
26	GTF2H2	5130358	838	0.820	0.5695	Yes
27	YBX1	1340039 4730500	866	0.802	0.5804	Yes
28	NUP43	3360482	887	0.785	0.5914	Yes
29	RPS24	5420377	892	0.783	0.6032	Yes
30	GARS	1230601	996	0.719	0.6086	Yes
31	SF3A3	6660603	1233	0.589	0.6049	Yes
32	CPSF1	6290064	1249	0.579	0.6130	Yes
33	PHF5A	2690519	1346	0.535	0.6160	Yes
34	POLR2I	4060400	1367	0.524	0.6230	Yes
35	TBP	1450601 2810193	1392	0.516	0.6296	Yes
36	SNRPF	3170280	1434	0.501	0.6351	Yes
37	EIF2B1	4610082 7040242	1642	0.423	0.6303	Yes
38	RAE1	7050121	1747	0.395	0.6308	Yes
39	GTF2H1	2570746 2650148	1763	0.390	0.6359	Yes
40	SFRS9	3800047	1809	0.371	0.6392	Yes
41	SNRPD2	6110035	1814	0.369	0.6447	Yes
42	NUP160	1990551	1868	0.355	0.6472	Yes
43	CCNC	3390750	1898	0.347	0.6510	Yes
44	POLR2H	5890242	1899	0.346	0.6563	Yes
45	RPL14	5080471	2026	0.312	0.6543	Yes
46	EIF4G1	4070446	2101	0.290	0.6547	Yes
47	GTF2E2	4010441	2179	0.270	0.6547	Yes
48	RPS23	7100594	2190	0.268	0.6583	Yes
49	GTF2H3	50600	2294	0.245	0.6565	Yes
50	SF3A2	3140500	2322	0.239	0.6587	Yes
51	NUP62	1240128	2362	0.230	0.6601	Yes
52	TAF12	3710746 4920300 6180603	2369	0.228	0.6633	Yes
53	EEF1E1	4540711	2389	0.225	0.6657	Yes
54	RPL5	840095	2401	0.222	0.6685	Yes
55	RNMT	1770500	2405	0.221	0.6717	Yes
56	SFRS3	770315 4230593	2480	0.208	0.6709	Yes
57	NUPL2	6550537	2519	0.199	0.6719	Yes
58	CSTF1	4610129	2604	0.184	0.6702	No
59	RPLP2	5290020	2669	0.174	0.6694	No
60	MED6	6840500	2822	0.152	0.6635	No
61	DNAJC8	4050075	2851	0.147	0.6642	No
62	EEF1G	3940603	2917	0.137	0.6628	No
63	YARS	70739	3021	0.126	0.6592	No
64	TAF11	5720538	3066	0.122	0.6587	No
65	RPS15A	1170180	3079	0.120	0.6599	No
66	RPS2	1340647	3130	0.114	0.6589	No
67	RNGTT	780152 780746 1090471	3136	0.114	0.6604	No
68	SNRPG	2340551	3164	0.111	0.6606	No
69	SF3B4	110072	3180	0.110	0.6615	No
70	FARS2	5340575	3236	0.103	0.6601	No
71	RPL4	2940014 5420324	3429	0.087	0.6511	No
72	MAGOH	2370373 5050068	3453	0.085	0.6511	No
73	RPL18A	4570619	3479	0.083	0.6511	No
74	NUDT21	1240167	3489	0.083	0.6518	No
75	RDBP	6590044	3535	0.079	0.6506	No
76	SNRPB	1230097 2940086 3520671	4027	0.053	0.6248	No
77	RARS2	5570524 6290497 6900332	4046	0.052	0.6247	No
78	RPL8	20296	4086	0.050	0.6233	No
79	POLR2J	7100372	4252	0.044	0.6151	No
80	RPL27	1940088	4356	0.041	0.6101	No
81	RPS21	3120673	4396	0.040	0.6086	No
82	POLR2A	5220647	4402	0.039	0.6090	No
83	SNW1	4010736	4562	0.035	0.6009	No
84	RPLP1	3140292	4652	0.032	0.5966	No
85	PTBP1	4070736	4692	0.032	0.5949	No
86	RPL6	6040735	4715	0.031	0.5942	No
87	RPS13	1570364	4892	0.028	0.5851	No
88	RANBP2	4280338	5005	0.026	0.5795	No
89	EEF2	1050369 4670035 5890598	5042	0.025	0.5779	No
90	TAF9	1850458 3830136	5092	0.024	0.5756	No
91	EIF2S1	5360292	5509	0.019	0.5534	No
92	RPS29	580324	5574	0.018	0.5502	No
93	SFRS1	2360440	5619	0.018	0.5481	No
94	EPRS	3170301	6560	0.011	0.4974	No
95	RNPS1	610736 1090021	7554	0.007	0.4437	No
96	CDK7	2640451	7750	0.006	0.4333	No
97	RPL17	2690167 5690504	8639	0.003	0.3852	No
98	POLR2B	3780138	8833	0.003	0.3748	No
99	HARS	6100487	9178	0.002	0.3562	No
100	CCNT2	2100390 4150563	9605	0.001	0.3332	No
101	TPR	1990066 6550390	10129	-0.001	0.3049	No
102	GTF2A2	2230184	10188	-0.001	0.3018	No
103	NUP54	940546 2360156 4060278	11083	-0.004	0.2534	No
104	NUP153	7000452	11299	-0.005	0.2418	No
105	TAF4	1450170	11332	-0.005	0.2402	No
106	DHX9	60017 1170095 2260014	11353	-0.005	0.2392	No
107	EIF5B	1190102 4200440	11389	-0.005	0.2374	No
108	SNRPB2	5720577	12382	-0.009	0.1838	No
109	POLR2C	1690020	12853	-0.011	0.1585	No
110	NUP35	5340408	13229	-0.014	0.1384	No
111	SF3B1	7000632	13396	-0.015	0.1297	No
112	RPL18	6380181 3870195	13681	-0.018	0.1146	No
113	RPL41	6940112	13805	-0.020	0.1082	No
114	LARS2	7000706	14074	-0.024	0.0941	No
115	SNRPA1	1050735 6110131	14440	-0.031	0.0748	No
116	NFX1	450504	14588	-0.035	0.0674	No
117	RPS28	3830221	14895	-0.046	0.0515	No
118	RPL28	6900136	14904	-0.047	0.0518	No
119	SMC1A	3060600 5700148 5890113 6370154	15141	-0.061	0.0400	No
120	RPS16	510722	15142	-0.061	0.0409	No
121	EIF4E	1580403 70133 6380215	15251	-0.069	0.0361	No
122	TH1L	1190632	15572	-0.097	0.0203	No
123	RPS5	580093	15580	-0.099	0.0214	No
124	IARS	460528 1580739 1690008	15604	-0.101	0.0217	No
125	RPL37A	7040717	15622	-0.102	0.0224	No
126	FAU	7100465	15664	-0.107	0.0218	No
127	RPS20	1740092	15738	-0.114	0.0196	No
128	GTF2B	6860685	15983	-0.141	0.0085	No
129	RPL11	3780435	16011	-0.144	0.0093	No
130	RPL19	5550592	16174	-0.168	0.0031	No
131	ERCC3	6900008	16176	-0.168	0.0056	No
132	SF3B3	3710044	16341	-0.193	-0.0003	No
133	PRPF8	1230497 1570600	16395	-0.203	-0.0000	No
134	SFRS5	3450176 6350008	16408	-0.206	0.0025	No
135	ELL	3520731	16419	-0.209	0.0052	No
136	SF3B2	6590576	16469	-0.218	0.0059	No
137	TAF10	2760020	16743	-0.279	-0.0046	No
138	SRRM1	6110025	16953	-0.334	-0.0108	No
139	CCNT1	2450563 5390184	17431	-0.508	-0.0288	No
140	CD2BP2	1580301	17570	-0.573	-0.0275	No
141	PRPF4	430301 2970364	17698	-0.656	-0.0243	No
142	WARS	2570717 3290139	17753	-0.685	-0.0167	No
143	SUPT4H1	6200056	17907	-0.791	-0.0128	No
144	SFRS7	2760408	17927	-0.808	-0.0015	No
145	EIF4EBP1	60132 5720148	18539	-2.520	0.0042	No