Details for gene set CYTOSKELETAL_PROTEIN

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	CYTOSKELETAL_PROTEIN_BINDING
Enrichment Score (ES)	-0.51790524
Normalized Enrichment Score (NES)	-1.711545
Nominal p-value	0.0
FDR q-value	0.27328268
FWER p-Value	0.884

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TNNT1	1419606_a_at	182	2.528	0.0186	No
2	APOE	1432466_a_at	191	2.473	0.0446	No
3	SSH1	1433874_at 1438253_at 1439237_a_at 1455854_a_at	484	1.694	0.0492	No
4	KATNA1	1450949_at	699	1.434	0.0547	No
5	MYH9	1417472_at 1420170_at 1420171_s_at 1420172_at 1440708_at	722	1.411	0.0687	No
6	CAPZB	1417259_a_at 1424168_a_at 1431668_at 1453960_a_at	789	1.354	0.0801	No
7	EGFR	1424932_at 1432647_at 1435888_at 1451530_at 1454313_at 1457563_at 1460420_a_at	951	1.215	0.0856	No
8	LRPPRC	1424353_at	1059	1.142	0.0929	No
9	TNNT2	1418726_a_at 1424967_x_at 1440424_at	1076	1.129	0.1042	No
10	CAPZA1	1439455_x_at 1440380_at	1267	1.016	0.1063	No
11	ARL8B	1418819_at 1428137_at 1428138_s_at	1432	0.927	0.1086	No
12	MAPK8IP3	1416437_a_at 1425975_a_at 1436676_at 1460628_at	1588	0.858	0.1107	No
13	TNNI3	1422536_at	2241	0.643	0.0876	No
14	VAPB	1423152_at 1436079_s_at 1445370_at 1458501_at	2305	0.627	0.0914	No
15	FXYD5	1418296_at	2913	0.500	0.0689	No
16	NDE1	1435737_a_at	3170	0.460	0.0620	No
17	BRCA2	1419076_a_at	3462	0.420	0.0532	No
18	SVIL	1427662_at 1460694_s_at 1460735_at	3666	0.396	0.0481	No
19	TRIM63	1438704_at	3705	0.392	0.0505	No
20	PKD2L1	1457105_at	3783	0.384	0.0511	No
21	ABLIM1	1442376_at 1453103_at 1454708_at 1460120_at	3868	0.375	0.0512	No
22	ACTN1	1427385_s_at 1428585_at 1452415_at	4153	0.351	0.0419	No
23	HOOK3	1443857_at 1446737_a_at	4255	0.342	0.0409	No
24	ABRA	1458455_at	4322	0.336	0.0415	No
25	UXT	1418986_a_at	4387	0.333	0.0421	No
26	S100B	1419383_at 1434342_at	4969	0.293	0.0185	No
27	TUBGCP5	1426518_at 1439923_at 1439924_x_at 1457282_x_at	5077	0.287	0.0167	No
28	CTNNA1	1437275_at 1437807_x_at 1443662_at 1448149_at	5748	0.243	-0.0115	No
29	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	5794	0.241	-0.0110	No
30	ABI1	1423177_a_at 1423178_at 1450890_a_at	5999	0.230	-0.0179	No
31	ADD1	1420953_at 1420954_a_at 1439125_at 1450054_at	6395	0.210	-0.0338	No
32	HPCA	1425833_a_at 1450930_at	6643	0.198	-0.0430	No
33	TARDBP	1423723_s_at 1428467_at 1434419_s_at 1436318_at 1455655_a_at	6884	0.186	-0.0520	No
34	PARVG	1416875_at 1416876_at	6920	0.185	-0.0516	No
35	LIMA1	1422499_at 1425654_a_at 1435726_at 1435727_s_at 1450629_at	7040	0.180	-0.0552	No
36	MAPT	1417885_at 1424718_at 1424719_a_at 1445634_at 1455028_at	7076	0.179	-0.0549	No
37	NRAP	1421253_at	7557	0.157	-0.0752	No
38	ANLN	1433543_at 1439648_at	7583	0.155	-0.0747	No
39	ABI2	1433985_at 1436984_at 1444783_at 1458053_at 1460153_at	7752	0.149	-0.0808	No
40	ARPC1A	1416079_a_at	8119	0.136	-0.0962	No
41	BIRC5	1424278_a_at	8131	0.135	-0.0952	No
42	MYO6	1421120_at 1433942_at 1435559_at	8662	0.116	-0.1183	No
43	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	8907	0.108	-0.1284	No
44	GC	1426547_at	8911	0.107	-0.1273	No
45	APC	1420956_at 1420957_at 1435543_at 1450056_at	9040	0.103	-0.1321	No
46	SHROOM3	1422629_s_at 1432377_x_at 1442952_at 1445401_at 1451854_a_at 1453714_a_at 1454211_a_at	9266	0.095	-0.1414	No
47	SORBS3	1419329_at	9530	0.086	-0.1526	No
48	SORBS2	1437197_at 1441624_at 1446744_at	9709	0.081	-0.1599	No
49	TMOD2	1430153_at 1431326_a_at 1435060_at 1437167_at 1439223_at 1451301_at	9981	0.071	-0.1716	No
50	NCALD	1417568_at 1417569_at 1439730_at 1444466_at 1458037_at	10034	0.069	-0.1732	No
51	PKD2	1417753_at 1441870_s_at	10236	0.063	-0.1818	No
52	PDLIM5	1429783_at 1438186_at 1442710_at 1446339_at	10674	0.048	-0.2013	No
53	CGN	1430329_at 1435155_at	10719	0.046	-0.2028	No
54	DYNC1I1	1416361_a_at	11012	0.036	-0.2158	No
55	MAP1S	1454732_at	11090	0.034	-0.2190	No
56	RPH3AL	1431695_at	11193	0.031	-0.2234	No
57	IPP	1421771_a_at	11226	0.029	-0.2245	No
58	ACTN2	1448327_at 1456968_at	11955	0.005	-0.2579	No
59	TNNC1	1418370_at	12393	-0.011	-0.2778	No
60	CCR5	1422259_a_at 1422260_x_at 1424727_at	12496	-0.015	-0.2823	No
61	STMN1	1415849_s_at	12666	-0.021	-0.2898	No
62	TTN	1427445_a_at 1427446_s_at 1431928_at 1444083_at 1444638_at 1446450_at	12752	-0.024	-0.2935	No
63	RAB11FIP5	1427405_s_at 1434314_s_at	12789	-0.026	-0.2949	No
64	MYBPC3	1418551_at	12796	-0.026	-0.2949	No
65	MAPK8IP2	1418785_at 1418786_at 1435045_s_at 1449225_a_at 1455194_at	13022	-0.035	-0.3048	No
66	PACSIN3	1416995_at 1431534_at 1437834_s_at 1456191_x_at	13478	-0.052	-0.3251	No
67	DST	1421117_at 1421276_a_at 1423626_at 1442395_at 1446943_at 1450119_at 1458075_at 1459098_at 1459356_at	13514	-0.053	-0.3262	No
68	ESPN	1423005_a_at 1458260_at	13753	-0.062	-0.3364	No
69	COTL1	1416001_a_at 1416002_x_at 1425801_x_at 1436236_x_at 1436838_x_at 1437811_x_at	13968	-0.071	-0.3455	No
70	ANK1	1419421_at 1425677_a_at 1443291_at 1450627_at 1452512_a_at	14053	-0.075	-0.3485	No
71	RHAG	1419014_at	14060	-0.075	-0.3480	No
72	TMOD4	1449969_at	14106	-0.078	-0.3492	No
73	KIF1B	1423994_at 1423995_at 1425270_at 1451200_at 1451642_at 1451762_a_at 1455182_at 1458426_at	14744	-0.106	-0.3773	No
74	NEXN	1435649_at 1446084_at	14773	-0.107	-0.3775	No
75	BAIAP2	1425656_a_at 1435128_at 1451027_at 1451028_at	14898	-0.112	-0.3820	No
76	ARHGEF2	1421042_at 1421043_s_at 1427646_a_at	15138	-0.123	-0.3916	No
77	DCX	1418139_at 1418140_at 1418141_at 1448974_at	15267	-0.130	-0.3961	No
78	CYFIP1	1416329_at 1445327_at 1457134_at 1457615_at	15708	-0.154	-0.4147	No
79	CNN2	1450981_at	15715	-0.154	-0.4133	No
80	SORBS1	1417358_s_at 1425826_a_at 1428471_at 1436737_a_at 1440311_at 1442401_at 1443983_at 1455967_at	15723	-0.154	-0.4120	No
81	SYNPO	1427045_at 1434089_at	15940	-0.166	-0.4201	No
82	RHCG	1417362_at	15957	-0.167	-0.4191	No
83	ATG4C	1434014_at 1441440_at	16401	-0.196	-0.4373	No
84	VCL	1416156_at 1416157_at 1445256_at	16767	-0.221	-0.4517	No
85	CROCC	1427338_at	16942	-0.235	-0.4572	No
86	SPTBN4	1425116_a_at	16951	-0.236	-0.4550	No
87	TUBGCP3	1426707_at	16961	-0.236	-0.4529	No
88	ARL8A	1424640_at	16992	-0.239	-0.4518	No
89	ARPC4	1423588_at 1423589_at	17010	-0.240	-0.4500	No
90	MEFV	1460283_at	17030	-0.242	-0.4483	No
91	PXN	1424027_at 1426085_a_at 1456135_s_at	17166	-0.253	-0.4518	No
92	DBNL	1460334_at	17553	-0.289	-0.4664	No
93	ARFGEF1	1415711_at 1437104_at 1444175_at 1456917_at	17633	-0.297	-0.4669	No
94	MAPK8IP1	1425679_a_at 1440619_at	17822	-0.318	-0.4721	No
95	SSH2	1456153_at	17833	-0.319	-0.4692	No
96	GABARAPL2	1423187_at 1441376_at 1444956_at 1459477_at	17957	-0.335	-0.4712	No
97	MYOZ1	1448636_at 1460202_at	18559	-0.423	-0.4943	No
98	MARCKS	1415971_at 1415972_at 1430311_at 1437034_x_at 1456028_x_at	18669	-0.443	-0.4946	No
99	SCIN	1450276_a_at	19091	-0.525	-0.5083	No
100	ADD2	1421975_a_at 1435287_at 1451914_a_at	19301	-0.569	-0.5118	Yes
101	CXCR4	1448710_at	19390	-0.587	-0.5096	Yes
102	RABGAP1	1424188_at 1441217_at 1441800_at 1443535_at 1457370_at 1460486_at	19455	-0.601	-0.5062	Yes
103	GABARAP	1416937_at	19548	-0.625	-0.5037	Yes
104	ACTA1	1427735_a_at	19700	-0.666	-0.5035	Yes
105	TUBGCP6	1435090_at	19778	-0.689	-0.4997	Yes
106	MAPRE1	1422764_at 1422765_at 1428819_at 1428820_at 1450740_a_at	19895	-0.725	-0.4973	Yes
107	JUP	1426873_s_at	19903	-0.729	-0.4899	Yes
108	FLNA	1426677_at	19992	-0.758	-0.4858	Yes
109	PALLD	1427228_at 1433768_at 1440635_at 1440693_at	20057	-0.778	-0.4805	Yes
110	CLASP2	1424836_a_at 1427328_a_at 1429976_at 1440802_at 1441726_at 1443320_at 1456911_at	20084	-0.792	-0.4732	Yes
111	MARK4	1439051_a_at 1456618_at	20120	-0.803	-0.4663	Yes
112	MYH10	1441057_at 1452740_at	20198	-0.835	-0.4609	Yes
113	TMOD3	1423088_at 1423089_at 1438556_a_at 1439626_at 1455708_at 1456913_at	20361	-0.908	-0.4587	Yes
114	IQGAP2	1433885_at 1459894_at	20368	-0.912	-0.4493	Yes
115	PRNP	1416130_at 1446507_at 1448233_at	20440	-0.945	-0.4424	Yes
116	SMTN	1452469_a_at	20491	-0.971	-0.4344	Yes
117	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20709	-1.130	-0.4323	Yes
118	CDK5RAP2	1443976_at 1447103_at 1452618_at	20728	-1.144	-0.4210	Yes
119	WASF2	1438683_at	20744	-1.153	-0.4094	Yes
120	MYLIP	1424988_at	20830	-1.211	-0.4004	Yes
121	KPTN	1423438_at 1440025_at	20900	-1.264	-0.3901	Yes
122	TLN1	1436042_at 1448402_at 1457782_at	20979	-1.328	-0.3795	Yes
123	CDC42EP3	1422642_at 1450700_at	21230	-1.604	-0.3739	Yes
124	POLB	1425371_at 1434229_a_at	21264	-1.646	-0.3578	Yes
125	ACTN4	1423449_a_at 1444258_at	21337	-1.743	-0.3426	Yes
126	CLASP1	1427353_at 1452265_at 1459233_at 1460102_at	21370	-1.793	-0.3250	Yes
127	MTSS1	1424826_s_at 1434036_at 1440847_at 1443729_at 1446284_at 1451496_at	21390	-1.847	-0.3062	Yes
128	CENPJ	1423140_at 1423141_at 1437643_at 1450872_s_at	21410	-1.876	-0.2870	Yes
129	MYO9B	1418031_at 1438533_at 1459110_at	21545	-2.156	-0.2702	Yes
130	ATG4D	1433918_at 1439130_at	21552	-2.170	-0.2474	Yes
131	KIF5B	1418427_at 1418428_at 1418429_at 1418430_at 1418431_at	21625	-2.334	-0.2258	Yes
132	SYNE1	1421545_a_at 1455225_at 1455493_at	21635	-2.359	-0.2011	Yes
133	LSP1	1417756_a_at	21755	-2.829	-0.1764	Yes
134	RAE1	1429528_at 1444256_at 1459822_at	21824	-3.273	-0.1447	Yes
135	UNC84B	1433832_at 1439238_at	21879	-3.868	-0.1060	Yes
136	GABARAPL1	1416418_at 1416419_s_at 1442572_at	21881	-3.884	-0.0646	Yes
137	RACGAP1	1421546_a_at 1441889_x_at 1451358_a_at	21926	-6.293	0.0004	Yes