Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	V$SRF_Q6
Enrichment Score (ES)	-0.43837732
Normalized Enrichment Score (NES)	-1.5314668
Nominal p-value	0.0
FDR q-value	0.14236656
FWER p-Value	0.824

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SLC7A1	1421533_at 1454991_at 1454992_at	57	3.524	0.0260	No
2	UBE2D3	1423112_at 1423113_a_at 1423114_at 1450858_a_at 1450859_s_at 1455479_a_at 1455480_s_at	98	3.045	0.0490	No
3	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	175	2.544	0.0662	No
4	COL1A2	1446326_at 1450857_a_at	269	2.108	0.0790	No
5	ATF4	1438992_x_at 1439258_at 1448135_at	301	2.015	0.0940	No
6	PDLIM4	1417928_at	402	1.812	0.1041	No
7	CKM	1417614_at	406	1.806	0.1187	No
8	RBBP7	1415775_at 1456227_x_at	690	1.450	0.1175	No
9	RSU1	1419259_at	880	1.269	0.1191	No
10	CABP1	1421255_a_at	975	1.196	0.1245	No
11	ACAA2	1428145_at 1428146_s_at 1455061_a_at	1331	0.971	0.1161	No
12	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	1599	0.855	0.1107	No
13	LDHA	1419737_a_at	1603	0.854	0.1175	No
14	H3F3A	1423263_at 1442087_at	1620	0.848	0.1237	No
15	NAV1	1436907_at 1443629_at 1446497_at	1744	0.798	0.1245	No
16	RAP1A	1424139_at	2047	0.700	0.1163	No
17	NR2F1	1418157_at 1422412_x_at	2159	0.668	0.1167	No
18	ACTR3	1426392_a_at 1434968_a_at 1452051_at	2267	0.638	0.1169	No
19	IGF2AS	1427394_at	2711	0.533	0.1009	No
20	FOSB	1422134_at	2811	0.516	0.1005	No
21	COL1A1	1423669_at 1455494_at	3018	0.482	0.0950	No
22	TCF8	1418926_at 1420243_at 1443005_at 1443203_at 1446127_at 1456686_at	3201	0.456	0.0903	No
23	EMILIN2	1435264_at	3273	0.444	0.0907	No
24	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	3296	0.442	0.0932	No
25	PPARG	1420715_a_at	3510	0.415	0.0868	No
26	RHOJ	1418892_at 1444982_at	3556	0.408	0.0881	No
27	AQP2	1418903_at	3586	0.406	0.0900	No
28	SVIL	1427662_at 1460694_s_at 1460735_at	3666	0.396	0.0896	No
29	GPR158	1438526_at 1459430_at	3694	0.393	0.0916	No
30	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	3801	0.382	0.0898	No
31	ITGA7	1418393_a_at	3822	0.380	0.0920	No
32	FGF8	1451882_a_at	3864	0.375	0.0931	No
33	MATR3	1434888_a_at 1438368_a_at 1441272_at 1450874_at 1458508_at	3897	0.372	0.0947	No
34	NFATC4	1423380_s_at 1432821_at 1454369_a_at	4000	0.365	0.0930	No
35	MYL1	1452651_a_at	4029	0.363	0.0946	No
36	ACTN1	1427385_s_at 1428585_at 1452415_at	4153	0.351	0.0918	No
37	PDLIM7	1417959_at 1428319_at 1443785_x_at	4374	0.333	0.0844	No
38	HOXA5	1443803_x_at 1448926_at	4410	0.331	0.0855	No
39	CSMD3	1438272_at 1438572_at 1454245_at	4613	0.316	0.0788	No
40	NNAT	1423506_a_at	4718	0.309	0.0765	No
41	NPR3	1435184_at 1448024_at 1450286_at	4909	0.297	0.0702	No
42	GPR20	1440021_at	4941	0.295	0.0712	No
43	GADD45G	1453851_a_at	5123	0.284	0.0651	No
44	EPHB1	1455188_at	5255	0.275	0.0614	No
45	TRDN	1426134_at 1426142_a_at 1426143_at 1426144_x_at 1451801_at 1451940_x_at	5313	0.271	0.0609	No
46	CNN1	1417917_at	5471	0.261	0.0558	No
47	MSX1	1417127_at 1448601_s_at	5504	0.259	0.0565	No
48	STARD13	1452604_at	5759	0.243	0.0468	No
49	NKX2-2	1421112_at	5764	0.242	0.0485	No
50	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	5876	0.236	0.0454	No
51	PRDM1	1420425_at 1444997_at	6009	0.229	0.0411	No
52	CFL1	1448346_at 1455138_x_at	6120	0.223	0.0379	No
53	INSM1	1421399_at 1455865_at	6195	0.219	0.0363	No
54	PDLIM3	1443299_at 1449178_at	6283	0.215	0.0340	No
55	MYL9	1452670_at	6675	0.197	0.0176	No
56	HOXB5	1418415_at	6755	0.192	0.0156	No
57	HIVEP3	1421150_at 1429134_at 1439660_at 1450132_at 1458802_at	6938	0.185	0.0087	No
58	NOL4	1430189_at 1441447_at 1456387_at	6953	0.184	0.0095	No
59	PLCB3	1448661_at	7047	0.180	0.0067	No
60	MAPKAPK2	1426648_at	7123	0.176	0.0047	No
61	HOXD13	1422239_at 1440626_at	7151	0.175	0.0049	No
62	IGF1	1419519_at 1436497_at 1437401_at 1452014_a_at	7375	0.165	-0.0040	No
63	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	7501	0.160	-0.0085	No
64	ASPH	1420959_at 1425274_at 1425275_at 1426015_s_at 1436455_at 1450058_at	7677	0.152	-0.0153	No
65	DMPK	1422989_a_at 1434944_at	7973	0.141	-0.0277	No
66	LRRTM4	1437214_at 1455937_at	8163	0.134	-0.0353	No
67	MYL7	1449071_at	8343	0.128	-0.0425	No
68	RARB	1454906_at	8366	0.127	-0.0425	No
69	TAGLN	1423505_at	8436	0.124	-0.0447	No
70	RIMS1	1435667_at 1438305_at 1444393_at	8514	0.121	-0.0472	No
71	NKX6-1	1425828_at	8882	0.109	-0.0632	No
72	PRELP	1416321_s_at 1416322_at	8896	0.108	-0.0629	No
73	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	8907	0.108	-0.0625	No
74	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	9229	0.096	-0.0765	No
75	NPAS2	1421036_at 1421037_at	9236	0.096	-0.0760	No
76	SRF	1418255_s_at 1418256_at	9470	0.088	-0.0860	No
77	SCN3B	1426328_a_at 1435767_at	9475	0.088	-0.0855	No
78	RAI2	1452358_at	9692	0.081	-0.0948	No
79	RASD2	1427343_at 1427344_s_at 1458433_at	9759	0.079	-0.0971	No
80	NPPA	1456062_at	9843	0.076	-0.1003	No
81	DHH	1422127_at 1434959_at	10265	0.062	-0.1192	No
82	PLN	1423359_at 1450952_at 1460332_at	10388	0.058	-0.1244	No
83	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	10528	0.053	-0.1303	No
84	MYO18B	1431813_at	10553	0.052	-0.1310	No
85	SRD5A2	1422960_at	10567	0.051	-0.1312	No
86	ATP1A2	1427465_at 1434893_at 1443823_s_at 1452308_a_at 1455136_at	11069	0.035	-0.1540	No
87	SIX2	1427436_at	11188	0.031	-0.1591	No
88	SLC4A3	1418485_at 1453687_at	11574	0.018	-0.1767	No
89	JPH2	1421453_at 1455404_at	11918	0.006	-0.1924	No
90	HOXB4	1451761_at 1460379_at	12097	-0.000	-0.2006	No
91	RAB27A	1425284_a_at 1425285_a_at 1429123_at 1454438_at	12283	-0.007	-0.2091	No
92	TNNC1	1418370_at	12393	-0.011	-0.2140	No
93	IL17B	1431693_a_at	12557	-0.018	-0.2213	No
94	EGR3	1421486_at 1436329_at	12603	-0.020	-0.2233	No
95	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	12626	-0.020	-0.2241	No
96	PPP2R3A	1455198_a_at	12886	-0.029	-0.2358	No
97	HIST1H4I	1424854_at	12924	-0.031	-0.2372	No
98	PPAP2B	1429514_at 1446850_at 1448908_at	12982	-0.033	-0.2396	No
99	EFHD1	1448507_at	13116	-0.038	-0.2454	No
100	FOSL1	1417487_at 1417488_at	13122	-0.038	-0.2453	No
101	KCNMB1	1421400_at 1421401_at	13237	-0.042	-0.2502	No
102	TITF1	1422346_at	13256	-0.043	-0.2507	No
103	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	13319	-0.045	-0.2532	No
104	SP7	1418425_at	13549	-0.055	-0.2633	No
105	TPM2	1419738_a_at 1419739_at 1425028_a_at 1449577_x_at	14054	-0.075	-0.2858	No
106	CORO1C	1417752_at 1419911_at 1437721_at 1442972_at 1449660_s_at 1459169_at	14088	-0.077	-0.2867	No
107	GNG8	1457755_at	14169	-0.080	-0.2898	No
108	ITGB1BP2	1423238_at	14199	-0.081	-0.2904	No
109	DVL3	1420457_at	14313	-0.086	-0.2949	No
110	SDPR	1416778_at 1416779_at 1443832_s_at	14422	-0.091	-0.2992	No
111	PODN	1435180_at	14424	-0.091	-0.2985	No
112	HOXA1	1420565_at	14533	-0.096	-0.3027	No
113	HOXC5	1439885_at 1450832_at 1456301_at	14590	-0.099	-0.3044	No
114	HOXD10	1418606_at	14688	-0.103	-0.3081	No
115	MYH11	1418122_at 1448962_at	14699	-0.104	-0.3077	No
116	KIF1B	1423994_at 1423995_at 1425270_at 1451200_at 1451642_at 1451762_a_at 1455182_at 1458426_at	14744	-0.106	-0.3088	No
117	KRTCAP2	1417058_a_at 1417059_at	15256	-0.129	-0.3313	No
118	MYL6	1435041_at	15368	-0.134	-0.3353	No
119	MRGPRF	1425894_at	15443	-0.139	-0.3376	No
120	SCOC	1416267_at 1430999_a_at	15671	-0.151	-0.3468	No
121	MAP1A	1460566_at	15679	-0.152	-0.3459	No
122	CNN2	1450981_at	15715	-0.154	-0.3463	No
123	HOXA3	1427433_s_at 1441070_at 1452421_at	16013	-0.171	-0.3585	No
124	TNMD	1417979_at	16018	-0.171	-0.3573	No
125	ABR	1433477_at	16212	-0.183	-0.3647	No
126	FOS	1423100_at	16233	-0.185	-0.3641	No
127	WNT5A	1436791_at 1448818_at 1456976_at	16676	-0.215	-0.3827	No
128	BLOC1S1	1422614_s_at	16755	-0.221	-0.3845	No
129	VCL	1416156_at 1416157_at 1445256_at	16767	-0.221	-0.3832	No
130	TRIM46	1460568_at	16787	-0.223	-0.3823	No
131	POU3F4	1422164_at 1422165_at	16869	-0.229	-0.3841	No
132	ARPC4	1423588_at 1423589_at	17010	-0.240	-0.3886	No
133	MYADM	1423321_at 1439389_s_at	17124	-0.250	-0.3918	No
134	FOXE3	1422393_at	17151	-0.252	-0.3909	No
135	CSNK1E	1417175_at 1417176_at 1435373_at	17270	-0.262	-0.3942	No
136	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	17313	-0.265	-0.3940	No
137	SEPX1	1418888_a_at	17364	-0.270	-0.3941	No
138	ROCK2	1423592_at 1451041_at	17379	-0.272	-0.3926	No
139	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	17401	-0.274	-0.3913	No
140	PRKAB2	1435874_at 1435875_at 1442001_at	17435	-0.276	-0.3906	No
141	FOXP3	1420765_a_at 1457082_at	17531	-0.286	-0.3926	No
142	FGFRL1	1447878_s_at 1451912_a_at	17642	-0.298	-0.3952	No
143	KCNK3	1425341_at 1425342_a_at 1426058_a_at	17775	-0.313	-0.3988	No
144	DGKG	1419756_at 1431167_at 1449584_at	17891	-0.326	-0.4014	No
145	TGFB1I1	1418136_at	18010	-0.341	-0.4041	No
146	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	18017	-0.342	-0.4016	No
147	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	18205	-0.366	-0.4072	No
148	PFN1	1449018_at	18512	-0.415	-0.4179	No
149	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	18706	-0.448	-0.4231	No
150	EML4	1429612_at 1447838_x_at	18774	-0.462	-0.4224	No
151	DUSP10	1417163_at 1417164_at	18820	-0.470	-0.4207	No
152	MYLK	1425504_at 1425505_at 1425506_at	18845	-0.476	-0.4179	No
153	PICALM	1441328_at 1443218_at 1446968_at 1451316_a_at 1455773_at	18895	-0.486	-0.4162	No
154	LDB3	1416752_at 1433783_at 1451999_at	18958	-0.501	-0.4150	No
155	CHD6	1427384_at 1431047_at	19467	-0.605	-0.4335	Yes
156	ADAMTS12	1439827_at 1446666_at	19540	-0.624	-0.4317	Yes
157	TADA3L	1417467_a_at 1448719_at	19549	-0.626	-0.4270	Yes
158	AGL	1429083_at 1431032_at 1431033_x_at	19574	-0.634	-0.4229	Yes
159	PHF12	1434922_at 1453579_at	19601	-0.641	-0.4189	Yes
160	ACTG2	1422340_a_at	19669	-0.656	-0.4167	Yes
161	TES	1424246_a_at 1440649_at 1460378_a_at	19676	-0.658	-0.4116	Yes
162	ACTA1	1427735_a_at	19700	-0.666	-0.4072	Yes
163	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	19735	-0.676	-0.4033	Yes
164	CTDSP1	1452055_at	19741	-0.679	-0.3980	Yes
165	MUS81	1431885_a_at 1450432_s_at	19812	-0.701	-0.3955	Yes
166	TAZ	1416207_at 1453785_at	19831	-0.708	-0.3906	Yes
167	LRRFIP1	1433842_at 1437477_at 1448487_at	19875	-0.719	-0.3867	Yes
168	JMJD1A	1426810_at	19946	-0.744	-0.3839	Yes
169	RUNDC1	1454829_at	19983	-0.757	-0.3794	Yes
170	FLNA	1426677_at	19992	-0.758	-0.3736	Yes
171	H2AFX	1416746_at	20032	-0.771	-0.3691	Yes
172	SIPA1	1416206_at	20083	-0.792	-0.3650	Yes
173	CFL2	1418066_at 1418067_at 1431432_at	20311	-0.887	-0.3682	Yes
174	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	20486	-0.969	-0.3683	Yes
175	DUSP2	1450698_at	20488	-0.970	-0.3605	Yes
176	NR4A1	1416505_at	20684	-1.112	-0.3604	Yes
177	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20709	-1.130	-0.3523	Yes
178	RERE	1454670_at	20719	-1.135	-0.3435	Yes
179	GRK6	1437436_s_at 1450480_a_at 1451672_at	20772	-1.176	-0.3363	Yes
180	STAT5B	1422102_a_at 1422103_a_at	20955	-1.307	-0.3341	Yes
181	FST	1421365_at 1434458_at	20957	-1.308	-0.3235	Yes
182	BDNF	1422168_a_at 1422169_a_at	21006	-1.362	-0.3146	Yes
183	DUSP5	1437199_at	21110	-1.471	-0.3074	Yes
184	PCDH7	1427592_at 1437442_at 1449249_at 1456214_at	21196	-1.570	-0.2985	Yes
185	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	21247	-1.621	-0.2876	Yes
186	MAP2K6	1426850_a_at 1459292_at	21374	-1.800	-0.2788	Yes
187	JUNB	1415899_at	21378	-1.811	-0.2642	Yes
188	EGR1	1417065_at	21457	-1.965	-0.2518	Yes
189	RASSF2	1428392_at 1444889_at	21601	-2.281	-0.2398	Yes
190	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	21632	-2.349	-0.2221	Yes
191	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	21689	-2.573	-0.2038	Yes
192	EGR2	1427682_a_at 1427683_at	21692	-2.582	-0.1828	Yes
193	LSP1	1417756_a_at	21755	-2.829	-0.1627	Yes
194	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21771	-2.909	-0.1397	Yes
195	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	21800	-3.133	-0.1155	Yes
196	CDKN1B	1419497_at 1434045_at	21841	-3.422	-0.0895	Yes
197	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	21855	-3.600	-0.0608	Yes
198	UNC84B	1433832_at 1439238_at	21879	-3.868	-0.0304	Yes
199	RRM1	1415878_at 1440073_at 1448127_at	21885	-4.048	0.0023	Yes