Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	V$SRF_Q4
Enrichment Score (ES)	-0.48027968
Normalized Enrichment Score (NES)	-1.619614
Nominal p-value	0.0017152659
FDR q-value	0.13318515
FWER p-Value	0.45

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TPM1	1423049_a_at 1423721_at 1447713_at 1456623_at	41	3.819	0.0365	No
2	CKM	1417614_at	406	1.806	0.0380	No
3	SERTAD4	1454877_at	436	1.753	0.0543	No
4	CSDA	1435800_a_at 1451012_a_at	609	1.530	0.0618	No
5	RBBP7	1415775_at 1456227_x_at	690	1.450	0.0727	No
6	SERPINH1	1450843_a_at 1456733_x_at	813	1.329	0.0804	No
7	DSTN	1417124_at	837	1.304	0.0925	No
8	RSU1	1419259_at	880	1.269	0.1033	No
9	AKAP12	1419706_a_at 1458235_at	2155	0.670	0.0515	No
10	NR2F1	1418157_at 1422412_x_at	2159	0.668	0.0581	No
11	IGF2AS	1427394_at	2711	0.533	0.0381	No
12	IHPK1	1422968_at 1422969_s_at 1438845_at 1438846_x_at 1452694_at	2728	0.530	0.0427	No
13	FOSB	1422134_at	2811	0.516	0.0442	No
14	EMILIN2	1435264_at	3273	0.444	0.0274	No
15	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	3296	0.442	0.0309	No
16	PPARG	1420715_a_at	3510	0.415	0.0253	No
17	RHOJ	1418892_at 1444982_at	3556	0.408	0.0273	No
18	TANK	1421640_a_at 1441513_at 1459668_at	3624	0.401	0.0283	No
19	SVIL	1427662_at 1460694_s_at 1460735_at	3666	0.396	0.0303	No
20	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	3801	0.382	0.0280	No
21	FGF8	1451882_a_at	3864	0.375	0.0290	No
22	MYO1B	1427450_x_at 1441210_at 1447364_x_at 1448989_a_at 1448990_a_at 1458007_at 1459679_s_at	3988	0.366	0.0270	No
23	TGIF	1422286_a_at	4026	0.363	0.0289	No
24	MYL1	1452651_a_at	4029	0.363	0.0325	No
25	ACTN1	1427385_s_at 1428585_at 1452415_at	4153	0.351	0.0304	No
26	HOXA5	1443803_x_at 1448926_at	4410	0.331	0.0219	No
27	NPR3	1435184_at 1448024_at 1450286_at	4909	0.297	0.0020	No
28	GPR20	1440021_at	4941	0.295	0.0036	No
29	GADD45G	1453851_a_at	5123	0.284	-0.0019	No
30	CNN1	1417917_at	5471	0.261	-0.0152	No
31	MSX1	1417127_at 1448601_s_at	5504	0.259	-0.0141	No
32	NKX2-2	1421112_at	5764	0.242	-0.0235	No
33	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	5876	0.236	-0.0263	No
34	ADAMTSL1	1430313_at	5881	0.236	-0.0241	No
35	RAB30	1426452_a_at	6043	0.227	-0.0292	No
36	CFL1	1448346_at 1455138_x_at	6120	0.223	-0.0304	No
37	TMOD1	1419863_at 1422754_at	6162	0.221	-0.0301	No
38	INSM1	1421399_at 1455865_at	6195	0.219	-0.0294	No
39	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	6350	0.212	-0.0343	No
40	NLGN3	1456384_at	6442	0.207	-0.0364	No
41	MYL9	1452670_at	6675	0.197	-0.0451	No
42	HOXB5	1418415_at	6755	0.192	-0.0468	No
43	COL23A1	1429209_at 1429210_at 1440911_at	6812	0.189	-0.0475	No
44	PLCB3	1448661_at	7047	0.180	-0.0564	No
45	MAPKAPK2	1426648_at	7123	0.176	-0.0581	No
46	EDN1	1451924_a_at	7359	0.165	-0.0672	No
47	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	7501	0.160	-0.0721	No
48	ASPH	1420959_at 1425274_at 1425275_at 1426015_s_at 1436455_at 1450058_at	7677	0.152	-0.0786	No
49	FGF17	1421523_at 1456239_at	7707	0.151	-0.0784	No
50	LRRTM4	1437214_at 1455937_at	8163	0.134	-0.0980	No
51	MYL7	1449071_at	8343	0.128	-0.1049	No
52	RARB	1454906_at	8366	0.127	-0.1047	No
53	TAGLN	1423505_at	8436	0.124	-0.1066	No
54	RIMS1	1435667_at 1438305_at 1444393_at	8514	0.121	-0.1089	No
55	CTGF	1416953_at	8654	0.117	-0.1141	No
56	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	8907	0.108	-0.1246	No
57	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	9229	0.096	-0.1384	No
58	NPAS2	1421036_at 1421037_at	9236	0.096	-0.1377	No
59	EGR4	1449977_at	9395	0.091	-0.1441	No
60	SRF	1418255_s_at 1418256_at	9470	0.088	-0.1466	No
61	RASD2	1427343_at 1427344_s_at 1458433_at	9759	0.079	-0.1590	No
62	NPPA	1456062_at	9843	0.076	-0.1621	No
63	SH3BGR	1422644_at	9911	0.074	-0.1644	No
64	ASPA	1418472_at	10297	0.061	-0.1815	No
65	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	10528	0.053	-0.1915	No
66	SRD5A2	1422960_at	10567	0.051	-0.1928	No
67	MID1	1422055_at 1438239_at 1441929_at 1443666_at	11209	0.030	-0.2219	No
68	CALN1	1425846_a_at	11260	0.028	-0.2239	No
69	SLC4A3	1418485_at 1453687_at	11574	0.018	-0.2381	No
70	CRH	1457984_at	11628	0.016	-0.2404	No
71	MMP14	1416572_at 1448383_at	11698	0.013	-0.2434	No
72	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	11757	0.012	-0.2460	No
73	JPH2	1421453_at 1455404_at	11918	0.006	-0.2533	No
74	EEF1B2	1448252_a_at	11989	0.004	-0.2565	No
75	VGF	1436094_at	12045	0.002	-0.2590	No
76	HOXB4	1451761_at 1460379_at	12097	-0.000	-0.2613	No
77	TNNC1	1418370_at	12393	-0.011	-0.2748	No
78	DLL1	1419204_at	12454	-0.014	-0.2774	No
79	IL17B	1431693_a_at	12557	-0.018	-0.2819	No
80	EGR3	1421486_at 1436329_at	12603	-0.020	-0.2838	No
81	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	12626	-0.020	-0.2846	No
82	PPP2R3A	1455198_a_at	12886	-0.029	-0.2962	No
83	PPAP2B	1429514_at 1446850_at 1448908_at	12982	-0.033	-0.3002	No
84	EFHD1	1448507_at	13116	-0.038	-0.3059	No
85	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	13126	-0.038	-0.3060	No
86	STAG2	1421849_at 1450396_at	13191	-0.041	-0.3085	No
87	KCNMB1	1421400_at 1421401_at	13237	-0.042	-0.3101	No
88	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	13319	-0.045	-0.3134	No
89	ATRX	1420945_at 1420946_at 1420947_at 1438750_at 1441014_at 1441771_at 1450051_at 1453734_at 1456832_at	13696	-0.060	-0.3301	No
90	TPM2	1419738_a_at 1419739_at 1425028_a_at 1449577_x_at	14054	-0.075	-0.3457	No
91	ITGB1BP2	1423238_at	14199	-0.081	-0.3515	No
92	DVL3	1420457_at	14313	-0.086	-0.3559	No
93	SDPR	1416778_at 1416779_at 1443832_s_at	14422	-0.091	-0.3599	No
94	PODN	1435180_at	14424	-0.091	-0.3591	No
95	HOXC5	1439885_at 1450832_at 1456301_at	14590	-0.099	-0.3656	No
96	BNC2	1438861_at 1440593_at 1459132_at	14638	-0.101	-0.3668	No
97	HOXD10	1418606_at	14688	-0.103	-0.3680	No
98	MYH11	1418122_at 1448962_at	14699	-0.104	-0.3674	No
99	KRTCAP2	1417058_a_at 1417059_at	15256	-0.129	-0.3917	No
100	MYL6	1435041_at	15368	-0.134	-0.3954	No
101	MRGPRF	1425894_at	15443	-0.139	-0.3974	No
102	SCOC	1416267_at 1430999_a_at	15671	-0.151	-0.4063	No
103	MAP1A	1460566_at	15679	-0.152	-0.4051	No
104	ELF4	1421337_at 1445778_at	15956	-0.167	-0.4161	No
105	HOXA3	1427433_s_at 1441070_at 1452421_at	16013	-0.171	-0.4170	No
106	TNMD	1417979_at	16018	-0.171	-0.4155	No
107	ABR	1433477_at	16212	-0.183	-0.4225	No
108	FOS	1423100_at	16233	-0.185	-0.4215	No
109	BLOC1S1	1422614_s_at	16755	-0.221	-0.4433	No
110	VCL	1416156_at 1416157_at 1445256_at	16767	-0.221	-0.4415	No
111	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	16778	-0.222	-0.4398	No
112	TRIM46	1460568_at	16787	-0.223	-0.4379	No
113	POU3F4	1422164_at 1422165_at	16869	-0.229	-0.4393	No
114	ARPC4	1423588_at 1423589_at	17010	-0.240	-0.4433	No
115	FOXE3	1422393_at	17151	-0.252	-0.4472	No
116	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	17313	-0.265	-0.4520	No
117	ROCK2	1423592_at 1451041_at	17379	-0.272	-0.4522	No
118	SLC35A2	1422827_x_at 1432533_a_at 1436664_a_at 1439433_a_at 1453858_at 1457024_x_at	17448	-0.278	-0.4525	No
119	SRP54	1430476_at 1441233_at 1441480_at	17591	-0.292	-0.4561	No
120	FGFRL1	1447878_s_at 1451912_a_at	17642	-0.298	-0.4554	No
121	KCNK3	1425341_at 1425342_a_at 1426058_a_at	17775	-0.313	-0.4584	No
122	SORT1	1423362_at 1423363_at 1450955_s_at	17819	-0.318	-0.4571	No
123	CHD2	1444246_at 1445843_at	17842	-0.321	-0.4549	No
124	DGKG	1419756_at 1431167_at 1449584_at	17891	-0.326	-0.4538	No
125	TGFB1I1	1418136_at	18010	-0.341	-0.4558	No
126	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	18017	-0.342	-0.4527	No
127	SGK	1416041_at	18027	-0.343	-0.4496	No
128	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	18205	-0.366	-0.4541	No
129	TBL1X	1434643_at 1434644_at 1441435_at 1446736_at 1455042_at	18334	-0.388	-0.4561	No
130	TAF5L	1448195_at	18500	-0.413	-0.4595	No
131	PFN1	1449018_at	18512	-0.415	-0.4558	No
132	ARHGEF17	1419938_s_at 1419939_at 1433682_at 1442357_at 1447441_at	18686	-0.445	-0.4593	No
133	ESRRA	1442864_at 1460652_at	18699	-0.448	-0.4553	No
134	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	18706	-0.448	-0.4511	No
135	EML4	1429612_at 1447838_x_at	18774	-0.462	-0.4495	No
136	MYLK	1425504_at 1425505_at 1425506_at	18845	-0.476	-0.4480	No
137	TADA3L	1417467_a_at 1448719_at	19549	-0.626	-0.4740	Yes
138	PHF12	1434922_at 1453579_at	19601	-0.641	-0.4699	Yes
139	IER2	1416442_at	19610	-0.643	-0.4638	Yes
140	ACTG2	1422340_a_at	19669	-0.656	-0.4598	Yes
141	ACTA1	1427735_a_at	19700	-0.666	-0.4545	Yes
142	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	19735	-0.676	-0.4493	Yes
143	VASP	1451097_at	19786	-0.691	-0.4446	Yes
144	MUS81	1431885_a_at 1450432_s_at	19812	-0.701	-0.4387	Yes
145	TAZ	1416207_at 1453785_at	19831	-0.708	-0.4324	Yes
146	JMJD1A	1426810_at	19946	-0.744	-0.4302	Yes
147	RUNDC1	1454829_at	19983	-0.757	-0.4242	Yes
148	FLNA	1426677_at	19992	-0.758	-0.4170	Yes
149	H2AFX	1416746_at	20032	-0.771	-0.4110	Yes
150	NCOA6	1423374_at	20070	-0.782	-0.4049	Yes
151	CSRP1	1425810_a_at 1425811_a_at	20266	-0.867	-0.4051	Yes
152	CFL2	1418066_at 1418067_at 1431432_at	20311	-0.887	-0.3982	Yes
153	DDX17	1437773_x_at 1439037_at 1452155_a_at	20469	-0.962	-0.3957	Yes
154	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	20486	-0.969	-0.3867	Yes
155	DUSP2	1450698_at	20488	-0.970	-0.3770	Yes
156	NR4A1	1416505_at	20684	-1.112	-0.3748	Yes
157	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20709	-1.130	-0.3645	Yes
158	RERE	1454670_at	20719	-1.135	-0.3535	Yes
159	GRK6	1437436_s_at 1450480_a_at 1451672_at	20772	-1.176	-0.3441	Yes
160	DUSP6	1415834_at	20874	-1.239	-0.3363	Yes
161	STAT5B	1422102_a_at 1422103_a_at	20955	-1.307	-0.3268	Yes
162	FST	1421365_at 1434458_at	20957	-1.308	-0.3137	Yes
163	DUSP5	1437199_at	21110	-1.471	-0.3059	Yes
164	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	21247	-1.621	-0.2958	Yes
165	MCL1	1416880_at 1416881_at 1437527_x_at 1448503_at 1456243_x_at 1456381_x_at	21369	-1.792	-0.2833	Yes
166	MAP2K6	1426850_a_at 1459292_at	21374	-1.800	-0.2654	Yes
167	JUNB	1415899_at	21378	-1.811	-0.2473	Yes
168	EGR1	1417065_at	21457	-1.965	-0.2312	Yes
169	AGRP	1421690_s_at 1457362_at	21598	-2.271	-0.2148	Yes
170	RASSF2	1428392_at 1444889_at	21601	-2.281	-0.1919	Yes
171	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	21632	-2.349	-0.1697	Yes
172	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	21689	-2.573	-0.1463	Yes
173	EGR2	1427682_a_at 1427683_at	21692	-2.582	-0.1205	Yes
174	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21771	-2.909	-0.0948	Yes
175	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	21800	-3.133	-0.0646	Yes
176	CDKN1B	1419497_at 1434045_at	21841	-3.422	-0.0320	Yes
177	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	21855	-3.600	0.0036	Yes