Details for gene set V$EFC

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	V$EFC_Q6
Enrichment Score (ES)	-0.44041252
Normalized Enrichment Score (NES)	-1.5213444
Nominal p-value	0.0015898251
FDR q-value	0.14232688
FWER p-Value	0.854

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	SLC7A1	1421533_at 1454991_at 1454992_at	57	3.524	0.0299	No
2	RREB1	1428657_at 1434741_at 1438216_at 1442047_at 1452862_at	419	1.782	0.0297	No
3	CD68	1449164_at	626	1.510	0.0341	No
4	UBE2L3	1417907_at 1417908_s_at 1448879_at 1448880_at	715	1.422	0.0432	No
5	XPOT	1428772_at 1428949_at 1441681_at 1441682_s_at	796	1.349	0.0520	No
6	HES1	1418102_at	868	1.281	0.0605	No
7	PTPN22	1417995_at 1442820_at	876	1.273	0.0719	No
8	NONO	1415820_x_at 1431239_at 1448103_s_at	894	1.255	0.0827	No
9	MRPL32	1424372_at	934	1.226	0.0922	No
10	NEK2	1417299_at 1437579_at 1437580_s_at 1443999_at	1053	1.146	0.0974	No
11	MORF4L2	1415778_at 1439413_x_at	1208	1.046	0.0999	No
12	PSMA2	1448206_at	1405	0.939	0.0996	No
13	FAF1	1418242_at 1434370_s_at	1784	0.785	0.0894	No
14	HNRPF	1450963_at	1904	0.740	0.0908	No
15	NPAS3	1421567_at 1429138_at 1438060_at 1450287_at	2244	0.642	0.0811	No
16	ARMC3	1429815_at 1429816_at	2275	0.636	0.0856	No
17	CARS	1427330_at 1452394_at	2537	0.571	0.0789	No
18	NUDC	1419471_a_at	2559	0.567	0.0831	No
19	RPP21	1449021_at	2677	0.537	0.0827	No
20	FOSB	1422134_at	2811	0.516	0.0813	No
21	DHX30	1416140_a_at 1438832_x_at 1438969_x_at 1453251_at	2871	0.506	0.0833	No
22	CACNA1D	1427974_s_at 1428051_a_at	2996	0.486	0.0821	No
23	THRA	1426997_at 1443952_at 1454675_at	3088	0.471	0.0822	No
24	GDPD2	1429076_a_at	3190	0.457	0.0818	No
25	FIBCD1	1435482_at	3279	0.444	0.0818	No
26	MT4	1450645_at	3336	0.436	0.0833	No
27	TCEAL1	1424634_at	3385	0.431	0.0850	No
28	SIX1	1427277_at	3412	0.428	0.0878	No
29	YWHAG	1420816_at 1420817_at 1450012_x_at 1459693_x_at	3542	0.410	0.0856	No
30	INSRR	1420564_at	3552	0.408	0.0890	No
31	SNPH	1435210_s_at	3553	0.408	0.0928	No
32	BTG4	1426520_at	3568	0.407	0.0959	No
33	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	3801	0.382	0.0887	No
34	BLOC1S2	1429048_at	3909	0.372	0.0872	No
35	PDCL2	1432503_a_at	3954	0.369	0.0886	No
36	TBC1D16	1435763_at 1442149_at	4200	0.347	0.0805	No
37	PRKCBP1	1426614_at 1429415_at 1445827_at 1456143_at 1458617_at	4206	0.347	0.0835	No
38	NDUFS4	1418117_at 1438166_x_at 1444464_at 1448959_at 1459760_at	4316	0.337	0.0816	No
39	OSR2	1426155_a_at 1430950_at	4325	0.336	0.0843	No
40	GRIK5	1418784_at	4450	0.328	0.0817	No
41	KCNN3	1421632_at 1459308_at	4589	0.318	0.0782	No
42	PHF15	1430081_at 1455345_at	4596	0.317	0.0809	No
43	SENP1	1424330_at 1428925_at 1451319_at	4981	0.292	0.0659	No
44	GALNT14	1453630_at	5065	0.287	0.0647	No
45	LDB2	1421101_a_at 1439557_s_at 1445126_at 1456786_at	5468	0.261	0.0487	No
46	PPIL4	1424043_at	5508	0.259	0.0493	No
47	HS2ST1	1422739_at 1440905_at 1450729_at 1450730_at	5761	0.243	0.0399	No
48	SHANK1	1444240_at	6039	0.227	0.0293	No
49	NTRK1	1443990_at	6065	0.226	0.0302	No
50	HOXC6	1427361_at 1427362_x_at 1427454_at	6426	0.208	0.0156	No
51	NLGN3	1456384_at	6442	0.207	0.0168	No
52	BMP6	1450759_at 1459947_at	6486	0.206	0.0167	No
53	NEUROD2	1444362_at	6604	0.200	0.0132	No
54	AKAP1	1418279_a_at 1449019_at	6725	0.193	0.0094	No
55	GGN	1445278_at	6730	0.193	0.0110	No
56	VIT	1426231_at	6974	0.183	0.0015	No
57	SLC39A12	1436611_at 1447248_at	6993	0.183	0.0024	No
58	CYP26B1	1460011_at	7020	0.181	0.0029	No
59	TTC16	1455414_at	7117	0.177	0.0001	No
60	PSD	1435780_at	7148	0.175	0.0003	No
61	PCDH17	1436920_at 1446821_at 1453070_at	7260	0.170	-0.0032	No
62	AMHR2	1427989_at 1438967_x_at 1457021_x_at	7404	0.163	-0.0083	No
63	HOXD4	1450209_at	7435	0.162	-0.0082	No
64	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	7501	0.160	-0.0097	No
65	BMP5	1421282_at 1421283_at 1444470_x_at 1455851_at	7683	0.152	-0.0166	No
66	ABI2	1433985_at 1436984_at 1444783_at 1458053_at 1460153_at	7752	0.149	-0.0184	No
67	IGSF8	1460675_at	7829	0.147	-0.0205	No
68	HNRPH2	1415963_at	8031	0.139	-0.0285	No
69	FLRT1	1443143_at	8081	0.137	-0.0295	No
70	PRRX1	1425526_a_at 1425527_at 1425528_at 1432129_a_at 1439774_at 1458004_at	8140	0.135	-0.0309	No
71	TBPL1	1431415_a_at 1434907_at	8146	0.135	-0.0299	No
72	TSGA14	1419686_at 1434576_at 1443792_at 1445416_at	8172	0.134	-0.0298	No
73	PHTF1	1449148_a_at	8206	0.133	-0.0301	No
74	EBF2	1418494_at 1446128_at 1449101_at 1449102_at	8218	0.132	-0.0294	No
75	GLA	1418248_at 1449006_at	8219	0.132	-0.0282	No
76	NRGN	1423231_at	8471	0.123	-0.0386	No
77	CACNA2D3	1419225_at	8520	0.121	-0.0397	No
78	TDRD7	1426716_at 1459216_at	8529	0.121	-0.0389	No
79	CAMK2A	1437125_at 1441734_at 1442707_at 1443876_at 1452453_a_at 1457311_at	8753	0.113	-0.0481	No
80	CDX4	1421552_at	8827	0.110	-0.0505	No
81	RPL32	1435897_at	8829	0.110	-0.0495	No
82	FOXD3	1422210_at	8848	0.110	-0.0493	No
83	WARS2	1429279_at 1435273_at	8883	0.109	-0.0499	No
84	COPS5	1439243_x_at 1460171_at	9537	0.086	-0.0791	No
85	TENC1	1452264_at	9571	0.085	-0.0799	No
86	HM13	1417287_at 1428855_at 1428856_at 1438456_at 1438865_at 1455631_at	9582	0.084	-0.0795	No
87	FKRP	1436812_at 1437536_at 1438414_at	9632	0.083	-0.0810	No
88	PPP3CB	1427468_at 1428473_at 1428474_at 1433835_at 1446149_at 1459378_at	9835	0.076	-0.0896	No
89	GRIN3A	1436575_at 1438866_at 1458378_at	9840	0.076	-0.0891	No
90	MITF	1422025_at 1455214_at	9875	0.075	-0.0900	No
91	DNAH9	1442412_at 1457401_at	9886	0.075	-0.0897	No
92	SLC17A6	1418610_at 1428379_at	9963	0.072	-0.0926	No
93	B3GALT2	1423084_at 1437433_at 1437644_at	10282	0.061	-0.1066	No
94	HOXC4	1422870_at	10313	0.060	-0.1075	No
95	TNKS1BP1	1427051_at	10324	0.060	-0.1074	No
96	SYT6	1420188_at 1426106_a_at 1449766_at 1449767_x_at	10392	0.058	-0.1099	No
97	EYA1	1421727_at 1443117_at 1457424_at	10434	0.056	-0.1113	No
98	ZFP36L1	1422528_a_at 1450644_at	10458	0.055	-0.1118	No
99	ROBO3	1421565_at 1436634_at	10714	0.046	-0.1231	No
100	PCYT1B	1436124_at 1437648_at	10749	0.045	-0.1243	No
101	FGF9	1420795_at 1438718_at 1445258_at	10862	0.041	-0.1291	No
102	MAGED1	1450062_a_at	10886	0.040	-0.1297	No
103	ARL4A	1425411_at 1431429_a_at 1435092_at	10929	0.039	-0.1313	No
104	SOX2	1416967_at	11017	0.036	-0.1350	No
105	HOXA10	1431475_a_at 1446408_at	11106	0.034	-0.1387	No
106	SLK	1419092_a_at 1425977_a_at 1433999_at 1441262_at 1443815_x_at 1449336_a_at	11178	0.031	-0.1417	No
107	USP12	1425805_a_at 1427478_at 1434483_at	11182	0.031	-0.1416	No
108	SASH1	1432055_at 1446880_at 1448005_at	11386	0.024	-0.1507	No
109	RGL1	1418535_at 1440662_at 1449124_at	11398	0.024	-0.1510	No
110	BTRC	1417325_at 1425680_a_at 1443142_at 1446925_at 1447120_at 1456780_at	11501	0.020	-0.1555	No
111	BTBD3	1425660_at 1433868_at 1442748_at	11518	0.020	-0.1560	No
112	PCYT1A	1421957_a_at 1424453_at 1438011_at 1450434_s_at	11630	0.016	-0.1610	No
113	PAX6	1419271_at 1425960_s_at 1437816_at 1452526_a_at 1456342_at	11763	0.011	-0.1669	No
114	HOXA4	1420226_x_at 1427354_at	11821	0.009	-0.1695	No
115	DPYSL5	1441246_s_at 1449290_at	11879	0.007	-0.1720	No
116	HOXA11	1420414_at	11888	0.007	-0.1723	No
117	RNF141	1418466_at 1427120_at 1433655_at 1449086_at 1449087_at	11909	0.006	-0.1732	No
118	STMN4	1418105_at	12118	-0.001	-0.1828	No
119	PDZRN4	1456512_at	12293	-0.007	-0.1907	No
120	LMO3	1455754_at	12650	-0.021	-0.2069	No
121	ITGB8	1436223_at	12767	-0.025	-0.2120	No
122	EFNB3	1423085_at	12840	-0.028	-0.2150	No
123	YWHAE	1426384_a_at 1426385_x_at 1435702_s_at 1438839_a_at 1440841_at 1457173_at	12851	-0.028	-0.2152	No
124	HOXB6	1451660_a_at	13142	-0.039	-0.2282	No
125	FERD3L	1422410_at	13178	-0.040	-0.2295	No
126	SLC22A8	1416966_at 1435418_at	13430	-0.050	-0.2405	No
127	EN2	1418868_at	13474	-0.052	-0.2420	No
128	PDE1A	1431625_at 1449298_a_at	13510	-0.053	-0.2432	No
129	BCL2L2	1423572_at 1430453_a_at 1430454_x_at 1451029_at	13652	-0.058	-0.2491	No
130	ARID1A	1447104_at	13684	-0.059	-0.2500	No
131	HMGN3	1431777_a_at 1434875_a_at 1459040_at	13722	-0.061	-0.2511	No
132	SEMA5B	1422146_at 1435963_at	13726	-0.061	-0.2507	No
133	BNC2	1438861_at 1440593_at 1459132_at	14638	-0.101	-0.2917	No
134	CELSR2	1422073_a_at 1435336_at	14780	-0.107	-0.2972	No
135	SCNN1A	1425088_at	14854	-0.111	-0.2995	No
136	TM9SF1	1418198_a_at 1442908_at	14988	-0.116	-0.3046	No
137	EBNA1BP2	1428315_at 1437512_x_at 1439898_at 1457668_x_at	15185	-0.126	-0.3124	No
138	MET	1422990_at	15401	-0.136	-0.3211	No
139	SMCR7	1434072_at	15525	-0.143	-0.3254	No
140	MAP1A	1460566_at	15679	-0.152	-0.3310	No
141	HOXA3	1427433_s_at 1441070_at 1452421_at	16013	-0.171	-0.3448	No
142	BCL2L1	1420887_a_at 1420888_at 1426050_at 1426191_a_at	16049	-0.173	-0.3448	No
143	THNSL1	1427936_at 1452605_at	16205	-0.183	-0.3502	No
144	ALMS1	1456950_at	16271	-0.186	-0.3515	No
145	PAK6	1445475_at 1455200_at	16562	-0.206	-0.3630	No
146	CBX6	1424407_s_at 1429290_at	16910	-0.232	-0.3768	No
147	RFX4	1432053_at 1436931_at 1443312_at	17214	-0.257	-0.3883	No
148	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	17401	-0.274	-0.3944	No
149	VEGF	1420909_at 1451959_a_at	17478	-0.280	-0.3953	No
150	EIF2C1	1434331_at	17489	-0.281	-0.3932	No
151	PPT2	1418302_at	17529	-0.285	-0.3923	No
152	GTF3C4	1434320_at 1438692_at	17718	-0.307	-0.3981	No
153	ADCK4	1448490_at	17879	-0.325	-0.4025	No
154	KCNA2	1422197_at	18002	-0.340	-0.4050	No
155	TRIM39	1418851_at	18459	-0.408	-0.4222	No
156	IRS2	1443969_at	18477	-0.410	-0.4192	No
157	ARPC5	1444568_at 1448129_at	18576	-0.426	-0.4198	No
158	BMPR2	1419616_at 1434310_at 1441652_at	18629	-0.435	-0.4182	No
159	CRIP2	1417311_at	18670	-0.443	-0.4159	No
160	MTA2	1423165_a_at	18722	-0.450	-0.4141	No
161	AP1M1	1416307_at 1459832_s_at	19224	-0.555	-0.4320	No
162	GPR22	1434672_at 1434673_at 1440019_at	19270	-0.563	-0.4289	No
163	PDE6D	1416843_at	19334	-0.575	-0.4265	No
164	KLF3	1421604_a_at 1429360_at 1431630_a_at 1441200_at 1442920_at 1454666_at	19551	-0.626	-0.4307	No
165	GTF3C1	1434066_at 1438425_at 1456024_at 1459673_at	19764	-0.685	-0.4341	Yes
166	NCOA5	1424055_at 1456997_at	19776	-0.688	-0.4283	Yes
167	STRN4	1426209_at	19853	-0.713	-0.4252	Yes
168	JMJD1A	1426810_at	19946	-0.744	-0.4225	Yes
169	STK36	1434733_at 1453584_at	20041	-0.774	-0.4197	Yes
170	FXYD6	1417343_at	20086	-0.793	-0.4145	Yes
171	TMEM24	1428095_a_at 1457585_at	20152	-0.818	-0.4099	Yes
172	RAD9A	1418404_at	20235	-0.853	-0.4058	Yes
173	NOS1	1422949_at 1438483_at 1458626_at	20285	-0.875	-0.4000	Yes
174	KCNE1	1420672_at 1441035_at	20288	-0.875	-0.3920	Yes
175	DFNB31	1432555_at 1436485_s_at 1436486_x_at 1442507_at 1447438_at	20323	-0.891	-0.3854	Yes
176	PHCA	1429520_a_at 1438435_at 1453179_at 1459771_x_at	20364	-0.910	-0.3788	Yes
177	CD69	1428735_at	20367	-0.911	-0.3705	Yes
178	DDX17	1437773_x_at 1439037_at 1452155_a_at	20469	-0.962	-0.3663	Yes
179	LSM6	1431054_at 1437108_at 1437109_s_at 1455926_at	20624	-1.061	-0.3636	Yes
180	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20709	-1.130	-0.3570	Yes
181	SLC4A2	1416637_at	20720	-1.137	-0.3470	Yes
182	STAT5B	1422102_a_at 1422103_a_at	20955	-1.307	-0.3457	Yes
183	BDNF	1422168_a_at 1422169_a_at	21006	-1.362	-0.3355	Yes
184	DDX31	1434182_at 1438962_s_at	21063	-1.413	-0.3250	Yes
185	KLHL1	1436465_at 1449241_at	21215	-1.588	-0.3173	Yes
186	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	21247	-1.621	-0.3038	Yes
187	CCRK	1422494_s_at	21563	-2.205	-0.2979	Yes
188	ST13	1416851_at 1442775_at 1460193_at	21603	-2.284	-0.2787	Yes
189	GBF1	1415709_s_at 1415757_at 1432677_at 1438207_at	21660	-2.442	-0.2587	Yes
190	CCDC6	1428311_at 1459159_a_at	21685	-2.555	-0.2363	Yes
191	RNF25	1442108_at 1448674_at	21791	-3.056	-0.2129	Yes
192	BCL6	1421818_at 1450381_a_at	21792	-3.059	-0.1847	Yes
193	CCND2	1416122_at 1416123_at 1416124_at 1430127_a_at 1434745_at 1448229_s_at 1455956_x_at	21826	-3.282	-0.1560	Yes
194	RRM1	1415878_at 1440073_at 1448127_at	21885	-4.048	-0.1213	Yes
195	SEP15	1448903_at 1454525_at	21889	-4.120	-0.0834	Yes
196	PSMF1	1424369_at 1424370_s_at 1424371_at 1451337_at	21892	-4.167	-0.0451	Yes
197	ETS2	1416268_at 1437809_x_at 1447685_x_at	21910	-5.096	0.0011	Yes