Details for gene set REACTOME_RNA_POLYMERASE_II

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	ATM_minus
GeneSet	REACTOME_RNA_POLYMERASE_II_TRANSCRIPTION
Enrichment Score (ES)	0.58244306
Normalized Enrichment Score (NES)	1.8077893
Nominal p-value	0.0
FDR q-value	0.030582853
FWER p-Value	0.289

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	THOC4	1417724_at 1436211_at	7	5.638	0.1263	Yes
2	SFRS11	1427269_at 1430077_at 1439095_at 1452371_at	260	2.144	0.1630	Yes
3	GTF2E1	1428124_at 1443110_at	339	1.924	0.2026	Yes
4	GTF2B	1438066_at 1451135_at	362	1.878	0.2438	Yes
5	SFRS6	1416720_at 1416721_s_at 1447898_s_at 1448454_at	485	1.692	0.2762	Yes
6	SFRS7	1424033_at 1424883_s_at 1436871_at	488	1.687	0.3140	Yes
7	NCBP2	1423045_at 1423046_s_at 1450847_at	527	1.641	0.3491	Yes
8	TAF9	1422778_at 1451509_at	578	1.566	0.3820	Yes
9	GTF2E2	1448884_at	593	1.550	0.4162	Yes
10	CSTF1	1417117_at 1448597_at	790	1.354	0.4376	Yes
11	GTF2H2	1450701_a_at 1457818_at	1179	1.069	0.4439	Yes
12	CSTF2	1419644_at 1419645_at 1455523_at	1239	1.033	0.4644	Yes
13	MNAT1	1432177_a_at	1351	0.962	0.4809	Yes
14	CDC40	1442667_at 1445348_at 1453342_at 1457366_at	1823	0.769	0.4767	Yes
15	GTF2F1	1417698_at 1417699_at	2060	0.694	0.4815	Yes
16	POLR2B	1433552_a_at	2086	0.687	0.4957	Yes
17	TAF1	1447417_at 1455513_at 1458744_at	2218	0.651	0.5044	Yes
18	TAF12	1423398_at	2229	0.645	0.5184	Yes
19	U2AF1	1422509_at	2374	0.611	0.5255	Yes
20	MAGOH	1416212_at	2436	0.596	0.5361	Yes
21	TAF13	1448707_at	2455	0.590	0.5486	Yes
22	POLR2E	1417138_s_at 1451093_at 1458326_at	2587	0.560	0.5552	Yes
23	GTF2A2	1433528_at	2647	0.544	0.5647	Yes
24	TAF5	1435474_at	2768	0.524	0.5710	Yes
25	SSRP1	1426788_a_at 1426789_s_at 1426790_at	2915	0.499	0.5755	Yes
26	CPSF1	1417665_a_at	3195	0.457	0.5730	Yes
27	SFRS3	1416150_a_at 1416151_at 1416152_a_at 1454993_a_at	3375	0.432	0.5745	Yes
28	PCF11	1427159_at 1427160_at 1428724_at 1456489_at	3413	0.428	0.5824	Yes
29	NFX1	1419752_at 1419753_at 1428248_at 1442397_at	3847	0.377	0.5711	No
30	POLR2L	1428296_at	4017	0.364	0.5715	No
31	POLR2I	1428494_a_at	4579	0.319	0.5530	No
32	POLR2A	1422311_a_at 1426242_at 1458710_at	4584	0.318	0.5600	No
33	POLR2D	1424258_at	5247	0.275	0.5359	No
34	POLR2F	1415754_at 1427402_at	7531	0.158	0.4350	No
35	ERCC2	1460727_at	7740	0.150	0.4289	No
36	ELL	1441928_x_at 1460643_at	7901	0.144	0.4248	No
37	RNMT	1436328_at 1440002_at 1446442_at 1453106_a_at	8854	0.110	0.3837	No
38	POLR2G	1416270_at	9534	0.086	0.3546	No
39	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	10600	0.050	0.3070	No
40	CCNT2	1427088_at 1427089_at 1435445_at 1452297_at 1453399_at 1457439_at	10842	0.042	0.2970	No
41	PAPOLA	1424216_a_at 1424217_at 1427544_a_at 1444015_at 1455836_at	10992	0.037	0.2910	No
42	POLR2C	1416341_at	11571	0.018	0.2649	No
43	POLR2H	1424473_at	11897	0.007	0.2502	No
44	ERCC3	1448497_at	12233	-0.005	0.2350	No
45	RDBP	1450705_at	12251	-0.005	0.2343	No
46	SFRS9	1417727_at	12595	-0.019	0.2191	No
47	TAF11	1446161_at 1451995_at	12926	-0.031	0.2047	No
48	CCNT1	1419313_at 1456477_at	13828	-0.066	0.1649	No
49	GTF2F2	1426626_at 1443233_at	13838	-0.066	0.1660	No
50	RNPS1	1437027_x_at 1437359_at 1437851_x_at 1438267_x_at 1448324_at	13848	-0.066	0.1671	No
51	GTF2A1	1421357_at	14157	-0.080	0.1548	No
52	SRRM1	1420934_a_at 1420935_a_at 1442330_at 1447447_s_at 1450045_at 1454689_at 1459828_at	14513	-0.095	0.1407	No
53	TH1L	1416198_at	14981	-0.116	0.1219	No
54	GTF2H1	1453169_a_at	15270	-0.130	0.1117	No
55	TBP	1426469_a_at 1426470_at	15631	-0.149	0.0985	No
56	PABPN1	1415728_at 1422848_a_at 1422849_a_at 1422850_at	15749	-0.156	0.0967	No
57	GTF2H3	1454092_a_at	15860	-0.162	0.0953	No
58	SFRS4	1448778_at	16705	-0.217	0.0616	No
59	CCNH	1418585_at	17127	-0.250	0.0479	No
60	U2AF2	1417260_at	17408	-0.274	0.0413	No
61	TCEB2	1428263_a_at	17707	-0.305	0.0345	No
62	POLR2J	1417720_at 1440065_at	18123	-0.355	0.0235	No
63	CDK7	1424257_at 1439511_at 1451741_a_at 1458987_at	18206	-0.367	0.0280	No
64	CDK9	1417269_at 1457240_at	18362	-0.391	0.0297	No
65	TAF10	1448784_at	18407	-0.397	0.0366	No
66	CSTF3	1424723_s_at 1443909_at	18724	-0.451	0.0322	No
67	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	18856	-0.477	0.0370	No
68	RNGTT	1425844_a_at 1448714_at	18936	-0.495	0.0445	No
69	TAF4	1427460_at 1452438_s_at	19291	-0.568	0.0411	No
70	TCEB1	1427914_a_at 1427915_s_at 1436226_at 1452593_a_at	19835	-0.709	0.0322	No
71	TAF6	1418593_at	20174	-0.825	0.0352	No
72	NUDT21	1417681_at 1428339_at 1437213_at 1455966_s_at	20339	-0.900	0.0479	No
73	TCEB3	1422591_at 1434117_at 1450676_at	20682	-1.111	0.0573	No