Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus.phenotype_ATM_minus_versus_BT_ATM_minus.cls #ATM_minus_versus_BT_ATM_minus_repos
Phenotype	phenotype_ATM_minus_versus_BT_ATM_minus.cls#ATM_minus_versus_BT_ATM_minus_repos
Upregulated in class	BT_ATM_minus
GeneSet	NETPATH_TCR
Enrichment Score (ES)	-0.54068846
Normalized Enrichment Score (NES)	-1.7369887
Nominal p-value	0.0
FDR q-value	0.19756874
FWER p-Value	0.641

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	14	5.027	0.0500	No
2	PLCG1	1435149_at 1450360_at	121	2.872	0.0740	No
3	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	175	2.544	0.0972	No
4	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	222	2.308	0.1184	No
5	UNC119	1418123_at	545	1.613	0.1198	No
6	SHB	1434153_at	817	1.327	0.1208	No
7	CEBPB	1418901_at 1427844_a_at	853	1.292	0.1322	No
8	PTPN22	1417995_at 1442820_at	876	1.273	0.1440	No
9	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	1423	0.930	0.1284	No
10	CREBBP	1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at	1966	0.723	0.1108	No
11	RAP1A	1424139_at	2047	0.700	0.1142	No
12	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	2630	0.549	0.0930	No
13	SKAP1	1437249_at 1440326_at 1440782_at 1441322_at 1441418_at 1441589_at 1456678_at	3152	0.462	0.0738	No
14	NCK1	1421487_a_at 1424543_at 1447271_at	3384	0.431	0.0676	No
15	PIK3R2	1418463_at	3394	0.430	0.0715	No
16	GRB2	1418508_a_at 1449111_a_at	3682	0.394	0.0623	No
17	ARHGEF6	1429012_at 1442292_at	3791	0.383	0.0612	No
18	KHDRBS1	1418628_at 1418630_at	3818	0.380	0.0639	No
19	ACP1	1422716_a_at 1422717_at 1450720_at 1450721_at	4272	0.341	0.0465	No
20	PTPN12	1422045_a_at 1439705_at 1450478_a_at 1450479_x_at 1455105_at 1459459_at	4320	0.337	0.0478	No
21	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	4385	0.333	0.0482	No
22	NFAM1	1425714_a_at 1428790_at	4503	0.324	0.0461	No
23	SHC1	1422853_at 1422854_at	5156	0.282	0.0191	No
24	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	5794	0.241	-0.0077	No
25	ABI1	1423177_a_at 1423178_at 1450890_a_at	5999	0.230	-0.0147	No
26	SLA2	1437504_at 1451492_at	6505	0.205	-0.0358	No
27	MAP2K1	1416351_at	6588	0.201	-0.0375	No
28	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	7089	0.178	-0.0587	No
29	RIPK2	1421236_at 1450173_at	7399	0.164	-0.0712	No
30	STK39	1419550_a_at 1419551_s_at 1431434_at 1445431_at	8582	0.119	-0.1241	No
31	DUSP3	1425608_at 1434472_at 1456769_at	9130	0.100	-0.1482	No
32	DNM2	1423629_at 1425135_a_at 1425136_x_at 1432004_a_at 1432005_at 1437938_x_at 1443150_at 1451057_x_at	9468	0.088	-0.1627	No
33	PTPN11	1421196_at 1427699_a_at 1451225_at	10663	0.048	-0.2169	No
34	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	11899	0.006	-0.2735	No
35	JAK3	1425750_a_at 1446515_at	11990	0.004	-0.2776	No
36	LAT	1460651_at	12675	-0.022	-0.3087	No
37	FYB	1452117_a_at	12781	-0.025	-0.3132	No
38	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	12865	-0.029	-0.3167	No
39	LIME1	1416869_x_at 1437589_x_at 1448500_a_at	12951	-0.032	-0.3203	No
40	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	13126	-0.038	-0.3279	No
41	ENAH	1421624_a_at 1424800_at 1424801_at 1431162_a_at 1442223_at 1446426_at 1458876_at	14076	-0.076	-0.3706	No
42	WAS	1419631_at	14944	-0.114	-0.4092	No
43	SOS1	1421884_at 1421885_at 1421886_at	15287	-0.131	-0.4235	No
44	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	15289	-0.131	-0.4223	No
45	VAV3	1417122_at 1417123_at 1446795_at 1448600_s_at 1458630_at	15772	-0.157	-0.4428	No
46	FOS	1423100_at	16233	-0.185	-0.4620	No
47	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	16383	-0.194	-0.4669	No
48	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	16539	-0.205	-0.4719	No
49	PTPN3	1443162_at 1455450_at	16746	-0.220	-0.4791	No
50	SKAP2	1418895_at 1457097_at 1460623_at	17107	-0.249	-0.4931	No
51	JUN	1417409_at 1448694_at	17249	-0.260	-0.4969	No
52	SRC	1423240_at 1450918_s_at	17286	-0.263	-0.4960	No
53	GRAP2	1456432_at	17380	-0.272	-0.4975	No
54	ARHGEF7	1424482_at 1449066_a_at	17396	-0.273	-0.4954	No
55	PRKCQ	1426044_a_at	17459	-0.279	-0.4954	No
56	CD8A	1440164_x_at 1440811_x_at	17494	-0.282	-0.4942	No
57	DBNL	1460334_at	17553	-0.289	-0.4939	No
58	ZAP70	1422701_at 1439749_at 1440178_x_at	17651	-0.299	-0.4954	No
59	CD2AP	1420906_at 1420907_at 1420908_at 1460140_at	17742	-0.309	-0.4964	No
60	HOMER3	1424859_at	18102	-0.351	-0.5093	No
61	SOS2	1452281_at	18336	-0.388	-0.5160	No
62	PTPN6	1456694_x_at 1460188_at	18371	-0.392	-0.5136	No
63	SH2D2A	1449105_at	18645	-0.438	-0.5218	No
64	PRKD2	1434333_a_at 1434334_at 1436589_x_at 1437509_x_at 1456075_at	18901	-0.488	-0.5285	No
65	LCP2	1418641_at 1418642_at	18938	-0.496	-0.5252	No
66	TUBB2A	1427838_at	19235	-0.557	-0.5331	No
67	CD3G	1419178_at	19401	-0.590	-0.5347	Yes
68	CD3D	1422828_at	19422	-0.595	-0.5297	Yes
69	DOCK2	1422808_s_at 1437282_at 1438334_at 1459382_at	19480	-0.607	-0.5262	Yes
70	PAG1	1423002_at 1440033_at 1443319_at 1456403_at	19547	-0.625	-0.5229	Yes
71	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	19738	-0.677	-0.5248	Yes
72	VASP	1451097_at	19786	-0.691	-0.5200	Yes
73	SH2D3C	1415886_at	19936	-0.741	-0.5193	Yes
74	ARHGDIB	1426454_at	19939	-0.742	-0.5120	Yes
75	STAT5A	1421469_a_at 1450259_a_at	20048	-0.776	-0.5091	Yes
76	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	20213	-0.844	-0.5081	Yes
77	FYN	1417558_at 1441647_at 1448765_at	20236	-0.853	-0.5005	Yes
78	CISH	1448724_at	20245	-0.856	-0.4923	Yes
79	PTPRC	1422124_a_at 1440165_at	20336	-0.899	-0.4874	Yes
80	SH3BP2	1448328_at	20411	-0.928	-0.4814	Yes
81	RAPGEF1	1421146_at 1427006_at 1441386_at	20442	-0.946	-0.4733	Yes
82	VAV1	1422932_a_at	20742	-1.152	-0.4754	Yes
83	WASF2	1438683_at	20744	-1.153	-0.4638	Yes
84	LAX1	1438687_at	20762	-1.167	-0.4528	Yes
85	CBL	1434829_at 1446608_at 1450457_at 1455886_at	20770	-1.171	-0.4413	Yes
86	DEF6	1452796_at	20853	-1.223	-0.4328	Yes
87	PSTPIP1	1424560_at	20937	-1.291	-0.4236	Yes
88	STAT5B	1422102_a_at 1422103_a_at	20955	-1.307	-0.4112	Yes
89	CBLB	1437304_at 1455082_at 1458469_at	20971	-1.321	-0.3986	Yes
90	CD3E	1422105_at 1445748_at	21120	-1.490	-0.3904	Yes
91	CD5	1418353_at	21121	-1.490	-0.3754	Yes
92	CARD11	1430257_at 1435996_at	21134	-1.505	-0.3608	Yes
93	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	21161	-1.529	-0.3466	Yes
94	GRAP	1429387_at	21223	-1.595	-0.3333	Yes
95	TRAT1	1427532_at 1437561_at	21275	-1.652	-0.3190	Yes
96	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	21285	-1.664	-0.3026	Yes
97	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	21289	-1.673	-0.2859	Yes
98	TXK	1425785_a_at	21335	-1.742	-0.2705	Yes
99	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	21375	-1.800	-0.2541	Yes
100	SIT1	1418751_at	21377	-1.806	-0.2360	Yes
101	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	21451	-1.949	-0.2197	Yes
102	PTK2B	1434653_at 1442437_at 1442927_at	21456	-1.964	-0.2001	Yes
103	DTX1	1425822_a_at 1458643_at	21608	-2.295	-0.1839	Yes
104	SLA	1420818_at 1420819_at 1441761_at 1447813_x_at	21663	-2.471	-0.1615	Yes
105	CD4	1419696_at 1427779_a_at	21679	-2.527	-0.1367	Yes
106	EVL	1434920_a_at 1440885_at 1445957_at 1450106_a_at 1456453_at 1458889_at	21683	-2.544	-0.1113	Yes
107	CDC42	1415724_a_at 1435807_at 1449574_a_at 1460708_s_at	21769	-2.901	-0.0859	Yes
108	GIT2	1423391_at 1432160_at 1435925_at	21852	-3.576	-0.0537	Yes
109	CD247	1420716_at 1426079_at 1426396_at 1428059_at 1428060_at 1438392_at 1452539_a_at	21921	-5.699	0.0006	Yes