Details for gene set CYTOSKELETAL_PROTEIN

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	CYTOSKELETAL_PROTEIN_BINDING
Enrichment Score (ES)	-0.5371462
Normalized Enrichment Score (NES)	-1.7166802
Nominal p-value	0.0
FDR q-value	0.4220426
FWER p-Value	0.801

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TNNT1	1419606_a_at	154	2.585	0.0213	No
2	APOE	1432466_a_at	234	2.236	0.0422	No
3	SSH1	1433874_at 1438253_at 1439237_a_at 1455854_a_at	575	1.510	0.0432	No
4	MYH9	1417472_at 1420170_at 1420171_s_at 1420172_at 1440708_at	640	1.418	0.0558	No
5	ABLIM1	1442376_at 1453103_at 1454708_at 1460120_at	884	1.194	0.0577	No
6	LRPPRC	1424353_at	933	1.159	0.0682	No
7	KATNA1	1450949_at	1075	1.072	0.0735	No
8	EGFR	1424932_at 1432647_at 1435888_at 1451530_at 1454313_at 1457563_at 1460420_a_at	1256	0.968	0.0759	No
9	ARL8B	1418819_at 1428137_at 1428138_s_at	1887	0.705	0.0547	No
10	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	1930	0.690	0.0604	No
11	TARDBP	1423723_s_at 1428467_at 1434419_s_at 1436318_at 1455655_a_at	2336	0.583	0.0482	No
12	MAPRE1	1422764_at 1422765_at 1428819_at 1428820_at 1450740_a_at	2341	0.582	0.0544	No
13	TNNI3	1422536_at	2627	0.519	0.0470	No
14	UXT	1418986_a_at	2740	0.495	0.0473	No
15	MAPK8IP3	1416437_a_at 1425975_a_at 1436676_at 1460628_at	2765	0.489	0.0516	No
16	PARVG	1416875_at 1416876_at	2775	0.487	0.0565	No
17	VCL	1416156_at 1416157_at 1445256_at	2800	0.482	0.0607	No
18	BRCA2	1419076_a_at	2856	0.472	0.0633	No
19	BIRC5	1424278_a_at	3490	0.388	0.0386	No
20	NDE1	1435737_a_at	3993	0.338	0.0192	No
21	MYO9B	1418031_at 1438533_at 1459110_at	4021	0.335	0.0217	No
22	RAB11FIP5	1427405_s_at 1434314_s_at	4137	0.325	0.0199	No
23	TRIM63	1438704_at	4553	0.297	0.0042	No
24	HPCA	1425833_a_at 1450930_at	4709	0.286	0.0002	No
25	RABGAP1	1424188_at 1441217_at 1441800_at 1443535_at 1457370_at 1460486_at	4762	0.283	0.0009	No
26	ABI2	1433985_at 1436984_at 1444783_at 1458053_at 1460153_at	4926	0.274	-0.0036	No
27	ABRA	1458455_at	5080	0.265	-0.0077	No
28	PKD2L1	1457105_at	5579	0.239	-0.0279	No
29	ADD1	1420953_at 1420954_a_at 1439125_at 1450054_at	6279	0.209	-0.0577	No
30	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	6451	0.202	-0.0633	No
31	VAPB	1423152_at 1436079_s_at 1445370_at 1458501_at	7166	0.176	-0.0941	No
32	SORBS2	1437197_at 1441624_at 1446744_at	7434	0.167	-0.1045	No
33	ARPC1A	1416079_a_at	7445	0.167	-0.1031	No
34	S100B	1419383_at 1434342_at	7654	0.160	-0.1109	No
35	GC	1426547_at	7849	0.154	-0.1181	No
36	ACTN2	1448327_at 1456968_at	7871	0.153	-0.1174	No
37	PKD2	1417753_at 1441870_s_at	8205	0.142	-0.1311	No
38	SYNPO	1427045_at 1434089_at	8241	0.141	-0.1312	No
39	MYO6	1421120_at 1433942_at 1435559_at	8260	0.141	-0.1305	No
40	MYBPC3	1418551_at	8357	0.137	-0.1334	No
41	SORBS3	1419329_at	8690	0.127	-0.1472	No
42	ARHGEF2	1421042_at 1421043_s_at 1427646_a_at	8925	0.120	-0.1566	No
43	NCALD	1417568_at 1417569_at 1439730_at 1444466_at 1458037_at	9239	0.110	-0.1698	No
44	IPP	1421771_a_at	9375	0.106	-0.1748	No
45	FXYD5	1418296_at	9516	0.102	-0.1801	No
46	LIMA1	1422499_at 1425654_a_at 1435726_at 1435727_s_at 1450629_at	9537	0.101	-0.1799	No
47	NRAP	1421253_at	9603	0.099	-0.1818	No
48	STMN1	1415849_s_at	9641	0.098	-0.1824	No
49	MAPK8IP2	1418785_at 1418786_at 1435045_s_at 1449225_a_at 1455194_at	10445	0.075	-0.2185	No
50	ACTN1	1427385_s_at 1428585_at 1452415_at	10908	0.062	-0.2390	No
51	TMOD2	1430153_at 1431326_a_at 1435060_at 1437167_at 1439223_at 1451301_at	11205	0.054	-0.2520	No
52	CCR5	1422259_a_at 1422260_x_at 1424727_at	11386	0.049	-0.2597	No
53	NEXN	1435649_at 1446084_at	11448	0.047	-0.2620	No
54	TNNC1	1418370_at	11456	0.047	-0.2618	No
55	MAPT	1417885_at 1424718_at 1424719_a_at 1445634_at 1455028_at	11464	0.046	-0.2616	No
56	PDLIM5	1429783_at 1438186_at 1442710_at 1446339_at	11920	0.033	-0.2821	No
57	DCX	1418139_at 1418140_at 1418141_at 1448974_at	11947	0.032	-0.2829	No
58	CAPZA1	1439455_x_at 1440380_at	11997	0.030	-0.2849	No
59	APC	1420956_at 1420957_at 1435543_at 1450056_at	12212	0.024	-0.2944	No
60	ANLN	1433543_at 1439648_at	12563	0.013	-0.3103	No
61	PRNP	1416130_at 1446507_at 1448233_at	13114	-0.004	-0.3355	No
62	DST	1421117_at 1421276_a_at 1423626_at 1442395_at 1446943_at 1450119_at 1458075_at 1459098_at 1459356_at	13356	-0.013	-0.3464	No
63	DYNC1I1	1416361_a_at	13466	-0.016	-0.3513	No
64	MAP1S	1454732_at	13778	-0.028	-0.3652	No
65	RHCG	1417362_at	13802	-0.029	-0.3660	No
66	SHROOM3	1422629_s_at 1432377_x_at 1442952_at 1445401_at 1451854_a_at 1453714_a_at 1454211_a_at	14195	-0.044	-0.3835	No
67	CGN	1430329_at 1435155_at	14238	-0.045	-0.3849	No
68	RHAG	1419014_at	14248	-0.045	-0.3848	No
69	TTN	1427445_a_at 1427446_s_at 1431928_at 1444083_at 1444638_at 1446450_at	14389	-0.050	-0.3907	No
70	ANK1	1419421_at 1425677_a_at 1443291_at 1450627_at 1452512_a_at	14540	-0.056	-0.3969	No
71	ARFGEF1	1415711_at 1437104_at 1444175_at 1456917_at	14570	-0.058	-0.3976	No
72	RPH3AL	1431695_at	14796	-0.067	-0.4072	No
73	TNNT2	1418726_a_at 1424967_x_at 1440424_at	15127	-0.082	-0.4215	No
74	CROCC	1427338_at	15306	-0.091	-0.4286	No
75	TUBGCP5	1426518_at 1439923_at 1439924_x_at 1457282_x_at	15452	-0.098	-0.4342	No
76	TMOD4	1449969_at	15832	-0.118	-0.4503	No
77	ATG4C	1434014_at 1441440_at	16119	-0.136	-0.4619	No
78	CAPZB	1417259_a_at 1424168_a_at 1431668_at 1453960_a_at	16340	-0.152	-0.4704	No
79	ARPC4	1423588_at 1423589_at	16393	-0.155	-0.4710	No
80	MEFV	1460283_at	16506	-0.163	-0.4744	No
81	MAPK8IP1	1425679_a_at 1440619_at	16574	-0.169	-0.4756	No
82	SPTBN4	1425116_a_at	16609	-0.171	-0.4753	No
83	BAIAP2	1425656_a_at 1435128_at 1451027_at 1451028_at	16977	-0.204	-0.4899	No
84	CDK5RAP2	1443976_at 1447103_at 1452618_at	17404	-0.250	-0.5067	No
85	CYFIP1	1416329_at 1445327_at 1457134_at 1457615_at	17451	-0.255	-0.5060	No
86	MYOZ1	1448636_at 1460202_at	17763	-0.292	-0.5171	No
87	PACSIN3	1416995_at 1431534_at 1437834_s_at 1456191_x_at	17818	-0.298	-0.5163	No
88	PXN	1424027_at 1426085_a_at 1456135_s_at	17857	-0.303	-0.5147	No
89	MARCKS	1415971_at 1415972_at 1430311_at 1437034_x_at 1456028_x_at	18104	-0.339	-0.5222	No
90	HOOK3	1443857_at 1446737_a_at	18130	-0.342	-0.5196	No
91	ESPN	1423005_a_at 1458260_at	18144	-0.343	-0.5165	No
92	SVIL	1427662_at 1460694_s_at 1460735_at	18321	-0.370	-0.5205	No
93	ARL8A	1424640_at	18373	-0.374	-0.5187	No
94	SCIN	1450276_a_at	18617	-0.417	-0.5253	No
95	SORBS1	1417358_s_at 1425826_a_at 1428471_at 1436737_a_at 1440311_at 1442401_at 1443983_at 1455967_at	18756	-0.446	-0.5267	No
96	IQGAP2	1433885_at 1459894_at	18829	-0.459	-0.5250	No
97	TUBGCP3	1426707_at	18967	-0.493	-0.5259	No
98	GABARAPL2	1423187_at 1441376_at 1444956_at 1459477_at	19131	-0.528	-0.5276	No
99	DBNL	1460334_at	19196	-0.544	-0.5245	No
100	CXCR4	1448710_at	19472	-0.613	-0.5304	Yes
101	ACTA1	1427735_a_at	19508	-0.620	-0.5252	Yes
102	ADD2	1421975_a_at 1435287_at 1451914_a_at	19643	-0.659	-0.5241	Yes
103	GABARAP	1416937_at	19715	-0.679	-0.5200	Yes
104	TLN1	1436042_at 1448402_at 1457782_at	19777	-0.700	-0.5151	Yes
105	TUBGCP6	1435090_at	19792	-0.705	-0.5080	Yes
106	SMTN	1452469_a_at	19818	-0.713	-0.5013	Yes
107	CLASP2	1424836_a_at 1427328_a_at 1429976_at 1440802_at 1441726_at 1443320_at 1456911_at	19844	-0.723	-0.4945	Yes
108	TMOD3	1423088_at 1423089_at 1438556_a_at 1439626_at 1455708_at 1456913_at	19899	-0.745	-0.4888	Yes
109	PALLD	1427228_at 1433768_at 1440635_at 1440693_at	19948	-0.761	-0.4827	Yes
110	MYH10	1441057_at 1452740_at	19960	-0.765	-0.4748	Yes
111	SSH2	1456153_at	20098	-0.818	-0.4721	Yes
112	CTNNA1	1437275_at 1437807_x_at 1443662_at 1448149_at	20114	-0.822	-0.4638	Yes
113	KIF5B	1418427_at 1418428_at 1418429_at 1418430_at 1418431_at	20354	-0.912	-0.4647	Yes
114	ABI1	1423177_a_at 1423178_at 1450890_a_at	20430	-0.947	-0.4578	Yes
115	MARK4	1439051_a_at 1456618_at	20441	-0.953	-0.4478	Yes
116	JUP	1426873_s_at	20476	-0.969	-0.4387	Yes
117	CNN2	1450981_at	20590	-1.040	-0.4325	Yes
118	COTL1	1416001_a_at 1416002_x_at 1425801_x_at 1436236_x_at 1436838_x_at 1437811_x_at	20643	-1.076	-0.4231	Yes
119	FLNA	1426677_at	20659	-1.088	-0.4118	Yes
120	KPTN	1423438_at 1440025_at	20826	-1.202	-0.4063	Yes
121	WASF2	1438683_at	20834	-1.206	-0.3934	Yes
122	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20881	-1.246	-0.3818	Yes
123	CDC42EP3	1422642_at 1450700_at	21312	-1.739	-0.3824	Yes
124	MYLIP	1424988_at	21346	-1.791	-0.3643	Yes
125	CLASP1	1427353_at 1452265_at 1459233_at 1460102_at	21394	-1.871	-0.3459	Yes
126	KIF1B	1423994_at 1423995_at 1425270_at 1451200_at 1451642_at 1451762_a_at 1455182_at 1458426_at	21408	-1.901	-0.3257	Yes
127	ACTN4	1423449_a_at 1444258_at	21433	-1.946	-0.3054	Yes
128	POLB	1425371_at 1434229_a_at	21467	-2.021	-0.2848	Yes
129	CENPJ	1423140_at 1423141_at 1437643_at 1450872_s_at	21473	-2.028	-0.2628	Yes
130	ATG4D	1433918_at 1439130_at	21487	-2.057	-0.2408	Yes
131	MTSS1	1424826_s_at 1434036_at 1440847_at 1443729_at 1446284_at 1451496_at	21597	-2.321	-0.2203	Yes
132	SYNE1	1421545_a_at 1455225_at 1455493_at	21630	-2.431	-0.1951	Yes
133	LSP1	1417756_a_at	21764	-3.014	-0.1682	Yes
134	UNC84B	1433832_at 1439238_at	21847	-3.545	-0.1330	Yes
135	RAE1	1429528_at 1444256_at 1459822_at	21858	-3.656	-0.0934	Yes
136	GABARAPL1	1416418_at 1416419_s_at 1442572_at	21879	-3.931	-0.0512	Yes
137	RACGAP1	1421546_a_at 1441889_x_at 1451358_a_at	21907	-4.892	0.0012	Yes