Details for gene set V$SRF_Q5

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$SRF_Q5_01
Enrichment Score (ES)	-0.495895
Normalized Enrichment Score (NES)	-1.6389166
Nominal p-value	0.0
FDR q-value	0.050301418
FWER p-Value	0.345

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CKM	1417614_at	306	1.974	0.0057	No
2	ATF4	1438992_x_at 1439258_at 1448135_at	378	1.823	0.0207	No
3	CSDA	1435800_a_at 1451012_a_at	583	1.501	0.0264	No
4	SERTAD4	1454877_at	600	1.472	0.0404	No
5	DSTN	1417124_at	883	1.194	0.0394	No
6	CTNND1	1422450_at 1437448_s_at 1445830_at	935	1.158	0.0487	No
7	RBBP7	1415775_at 1456227_x_at	948	1.148	0.0597	No
8	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	1105	1.052	0.0630	No
9	RSU1	1419259_at	1733	0.759	0.0418	No
10	RHOJ	1418892_at 1444982_at	1884	0.706	0.0420	No
11	PDLIM7	1417959_at 1428319_at 1443785_x_at	1961	0.680	0.0453	No
12	EMILIN2	1435264_at	2158	0.626	0.0426	No
13	NFATC4	1423380_s_at 1432821_at 1454369_a_at	2178	0.620	0.0479	No
14	NR2F1	1418157_at 1422412_x_at	2215	0.608	0.0524	No
15	LCP1	1415983_at 1448160_at	2270	0.596	0.0559	No
16	PELI2	1419006_s_at 1436966_at 1437181_at	2410	0.566	0.0551	No
17	IGF2AS	1427394_at	2484	0.548	0.0573	No
18	COL1A1	1423669_at 1455494_at	2581	0.530	0.0582	No
19	VCL	1416156_at 1416157_at 1445256_at	2800	0.482	0.0530	No
20	TANK	1421640_a_at 1441513_at 1459668_at	2926	0.461	0.0518	No
21	PPARG	1420715_a_at	3034	0.444	0.0514	No
22	ATF3	1449363_at	3225	0.420	0.0469	No
23	SLC2A4	1415958_at 1415959_at	3554	0.382	0.0356	No
24	FOSB	1422134_at	3800	0.354	0.0279	No
25	SDPR	1416778_at 1416779_at 1443832_s_at	4023	0.334	0.0210	No
26	NPR3	1435184_at 1448024_at 1450286_at	4467	0.303	0.0037	No
27	GGN	1445278_at	4470	0.303	0.0067	No
28	TRIM3	1451663_a_at	4491	0.301	0.0088	No
29	STARD13	1452604_at	4537	0.298	0.0097	No
30	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	4688	0.288	0.0057	No
31	ADAMTSL1	1430313_at	4828	0.280	0.0021	No
32	FGF17	1421523_at 1456239_at	4922	0.275	0.0006	No
33	FLNC	1424063_at 1447812_x_at 1449073_at	5026	0.268	-0.0015	No
34	MAPKAPK2	1426648_at	5246	0.257	-0.0090	No
35	FGF8	1451882_a_at	5276	0.255	-0.0077	No
36	UBE2H	1418631_at 1418632_at 1428791_at 1438971_x_at 1447374_at 1459930_at	5415	0.249	-0.0116	No
37	SLC16A6	1417884_at	5460	0.245	-0.0112	No
38	MYL9	1452670_at	5544	0.241	-0.0126	No
39	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	6451	0.202	-0.0522	No
40	SRD5A2	1422960_at	6474	0.201	-0.0512	No
41	FGF7	1422243_at 1438405_at	6504	0.200	-0.0505	No
42	PLCB3	1448661_at	6579	0.197	-0.0519	No
43	RARB	1454906_at	6847	0.188	-0.0623	No
44	HOXB5	1418415_at	7000	0.182	-0.0675	No
45	CNN1	1417917_at	7062	0.180	-0.0685	No
46	H3F3A	1423263_at 1442087_at	7274	0.173	-0.0764	No
47	GADD45G	1453851_a_at	7507	0.165	-0.0854	No
48	SCOC	1416267_at 1430999_a_at	7516	0.165	-0.0842	No
49	DUSP10	1417163_at 1417164_at	7640	0.161	-0.0882	No
50	ACTR3	1426392_a_at 1434968_a_at 1452051_at	7949	0.150	-0.1009	No
51	HOXC4	1422870_at	8342	0.138	-0.1175	No
52	MYL7	1449071_at	8440	0.135	-0.1206	No
53	ASPA	1418472_at	8515	0.133	-0.1227	No
54	DVL3	1420457_at	8731	0.126	-0.1313	No
55	NPAS2	1421036_at 1421037_at	8952	0.119	-0.1402	No
56	NKX2-2	1421112_at	8992	0.117	-0.1408	No
57	SRF	1418255_s_at 1418256_at	9000	0.117	-0.1400	No
58	ITGB6	1422983_at 1432281_a_at	9041	0.116	-0.1407	No
59	ITGB1BP2	1423238_at	9337	0.107	-0.1531	No
60	TRDN	1426134_at 1426142_a_at 1426143_at 1426144_x_at 1451801_at 1451940_x_at	9503	0.102	-0.1597	No
61	RIMS1	1435667_at 1438305_at 1444393_at	9658	0.098	-0.1658	No
62	CXCL5	1419728_at	9696	0.097	-0.1665	No
63	TIMP3	1419088_at 1419089_at 1449334_at 1449335_at	9910	0.091	-0.1754	No
64	CALN1	1425846_a_at	10001	0.088	-0.1787	No
65	MID1	1422055_at 1438239_at 1441929_at 1443666_at	10013	0.087	-0.1783	No
66	EEF1B2	1448252_a_at	10092	0.085	-0.1810	No
67	TNMD	1417979_at	10185	0.082	-0.1844	No
68	CHST8	1428977_at	10477	0.074	-0.1971	No
69	RAI2	1452358_at	10625	0.070	-0.2031	No
70	ACTN1	1427385_s_at 1428585_at 1452415_at	10908	0.062	-0.2155	No
71	GPR20	1440021_at	11041	0.058	-0.2209	No
72	TAGLN	1423505_at	11175	0.055	-0.2265	No
73	OTX1	1437601_at	11186	0.055	-0.2264	No
74	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	11210	0.054	-0.2269	No
75	PLN	1423359_at 1450952_at 1460332_at	11242	0.053	-0.2278	No
76	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	11244	0.053	-0.2273	No
77	CFL1	1448346_at 1455138_x_at	11312	0.051	-0.2299	No
78	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	11495	0.045	-0.2378	No
79	IL17B	1431693_a_at	11546	0.044	-0.2397	No
80	NPPA	1456062_at	11646	0.041	-0.2438	No
81	EFHD1	1448507_at	11778	0.037	-0.2495	No
82	LRRTM4	1437214_at 1455937_at	11849	0.035	-0.2523	No
83	ASB2	1428444_at 1436259_at	11944	0.032	-0.2563	No
84	CRH	1457984_at	11970	0.031	-0.2572	No
85	TADA3L	1417467_a_at 1448719_at	12293	0.021	-0.2718	No
86	PPP2R3A	1455198_a_at	12354	0.020	-0.2743	No
87	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	12530	0.014	-0.2822	No
88	MYH11	1418122_at 1448962_at	12590	0.012	-0.2848	No
89	PODN	1435180_at	12669	0.011	-0.2883	No
90	CA3	1430584_s_at 1449434_at 1453588_at 1460256_at	13178	-0.006	-0.3116	No
91	MITF	1422025_at 1455214_at	13334	-0.012	-0.3186	No
92	CORO1C	1417752_at 1419911_at 1437721_at 1442972_at 1449660_s_at 1459169_at	13354	-0.013	-0.3193	No
93	TPM2	1419738_a_at 1419739_at 1425028_a_at 1449577_x_at	13437	-0.016	-0.3230	No
94	DLL1	1419204_at	13628	-0.022	-0.3315	No
95	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	13747	-0.027	-0.3366	No
96	SLC4A3	1418485_at 1453687_at	13810	-0.029	-0.3392	No
97	WNT3	1450763_x_at	13966	-0.034	-0.3460	No
98	MRGPRF	1425894_at	14007	-0.036	-0.3474	No
99	NRAS	1422688_a_at 1454060_a_at	14084	-0.039	-0.3505	No
100	KRTCAP2	1417058_a_at 1417059_at	14544	-0.056	-0.3711	No
101	PPAP2B	1429514_at 1446850_at 1448908_at	14653	-0.061	-0.3754	No
102	ABR	1433477_at	14675	-0.062	-0.3758	No
103	MLLT7	1422149_at	14849	-0.069	-0.3830	No
104	HOXD10	1418606_at	14887	-0.070	-0.3840	No
105	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	14906	-0.071	-0.3841	No
106	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	14927	-0.072	-0.3843	No
107	EML4	1429612_at 1447838_x_at	15102	-0.081	-0.3915	No
108	FOXE3	1422393_at	15109	-0.081	-0.3910	No
109	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	15219	-0.087	-0.3951	No
110	MRPS21	1422451_at	15244	-0.088	-0.3954	No
111	BNC2	1438861_at 1440593_at 1459132_at	15393	-0.096	-0.4012	No
112	TRIM46	1460568_at	15583	-0.104	-0.4088	No
113	EGR3	1421486_at 1436329_at	15625	-0.106	-0.4097	No
114	HOXC5	1439885_at 1450832_at 1456301_at	15852	-0.119	-0.4189	No
115	ABCA1	1421839_at 1421840_at 1450392_at	15940	-0.124	-0.4216	No
116	ITGB8	1436223_at	15999	-0.128	-0.4230	No
117	COL23A1	1429209_at 1429210_at 1440911_at	16049	-0.131	-0.4239	No
118	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	16154	-0.138	-0.4273	No
119	FGFRL1	1447878_s_at 1451912_a_at	16259	-0.145	-0.4307	No
120	ARPC4	1423588_at 1423589_at	16393	-0.155	-0.4352	No
121	MAP1A	1460566_at	16794	-0.187	-0.4517	No
122	TGFB1I1	1418136_at	16996	-0.206	-0.4589	No
123	MYL6	1435041_at	17474	-0.257	-0.4783	No
124	HOXB4	1451761_at 1460379_at	17482	-0.258	-0.4760	No
125	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	17505	-0.261	-0.4744	No
126	DGKG	1419756_at 1431167_at 1449584_at	17511	-0.261	-0.4720	No
127	MYLK	1425504_at 1425505_at 1425506_at	17558	-0.268	-0.4714	No
128	BLOC1S1	1422614_s_at	17771	-0.293	-0.4782	No
129	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	17800	-0.296	-0.4766	No
130	KCNK3	1425341_at 1425342_a_at 1426058_a_at	17810	-0.297	-0.4740	No
131	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	18087	-0.336	-0.4833	No
132	TAF5L	1448195_at	18260	-0.362	-0.4876	No
133	CFL2	1418066_at 1418067_at 1431432_at	18279	-0.364	-0.4848	No
134	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	18287	-0.365	-0.4814	No
135	SVIL	1427662_at 1460694_s_at 1460735_at	18321	-0.370	-0.4792	No
136	CASQ1	1422598_at	18361	-0.373	-0.4773	No
137	MYADM	1423321_at 1439389_s_at	18529	-0.401	-0.4809	No
138	PFN1	1449018_at	18536	-0.403	-0.4772	No
139	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	18944	-0.486	-0.4910	Yes
140	PICALM	1441328_at 1443218_at 1446968_at 1451316_a_at 1455773_at	18973	-0.494	-0.4874	Yes
141	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	18989	-0.497	-0.4831	Yes
142	NRXN3	1419825_at 1431153_at 1432931_at 1433788_at 1438193_at 1439629_at 1442423_at 1444700_at 1456137_at 1460101_at	19017	-0.502	-0.4793	Yes
143	PRKAB2	1435874_at 1435875_at 1442001_at	19092	-0.518	-0.4775	Yes
144	CDC25B	1421963_a_at	19289	-0.570	-0.4808	Yes
145	ACTG2	1422340_a_at	19334	-0.581	-0.4770	Yes
146	LDB1	1452024_a_at	19346	-0.583	-0.4716	Yes
147	CHD2	1444246_at 1445843_at	19401	-0.597	-0.4681	Yes
148	H2AFX	1416746_at	19410	-0.599	-0.4625	Yes
149	ACTA1	1427735_a_at	19508	-0.620	-0.4607	Yes
150	CSRP1	1425810_a_at 1425811_a_at	19531	-0.628	-0.4555	Yes
151	LRRFIP1	1433842_at 1437477_at 1448487_at	19687	-0.671	-0.4559	Yes
152	MUS81	1431885_a_at 1450432_s_at	19797	-0.707	-0.4538	Yes
153	TAZ	1416207_at 1453785_at	19839	-0.721	-0.4484	Yes
154	JMJD1A	1426810_at	19993	-0.776	-0.4477	Yes
155	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	20038	-0.794	-0.4417	Yes
156	PHF12	1434922_at 1453579_at	20058	-0.802	-0.4346	Yes
157	SGK	1416041_at	20087	-0.813	-0.4277	Yes
158	RUNDC1	1454829_at	20199	-0.848	-0.4243	Yes
159	GRK6	1437436_s_at 1450480_a_at 1451672_at	20236	-0.862	-0.4173	Yes
160	FOS	1423100_at	20292	-0.887	-0.4110	Yes
161	VASP	1451097_at	20520	-0.995	-0.4114	Yes
162	CNN2	1450981_at	20590	-1.040	-0.4042	Yes
163	FLNA	1426677_at	20659	-1.088	-0.3964	Yes
164	ARF6	1418822_a_at 1418823_at 1418824_at	20682	-1.104	-0.3863	Yes
165	IER2	1416442_at	20846	-1.216	-0.3816	Yes
166	STAT5B	1422102_a_at 1422103_a_at	21046	-1.408	-0.3767	Yes
167	DUSP5	1437199_at	21089	-1.461	-0.3640	Yes
168	RERE	1454670_at	21197	-1.582	-0.3530	Yes
169	MAP2K6	1426850_a_at 1459292_at	21369	-1.830	-0.3425	Yes
170	JUNB	1415899_at	21415	-1.913	-0.3254	Yes
171	KCNH2	1449544_a_at	21539	-2.171	-0.3093	Yes
172	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	21654	-2.503	-0.2895	Yes
173	RASSF2	1428392_at 1444889_at	21668	-2.567	-0.2643	Yes
174	PCDH7	1427592_at 1437442_at 1449249_at 1456214_at	21783	-3.107	-0.2384	Yes
175	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	21797	-3.181	-0.2071	Yes
176	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21805	-3.240	-0.1750	Yes
177	EGR1	1417065_at	21809	-3.263	-0.1424	Yes
178	CDKN1B	1419497_at 1434045_at	21843	-3.508	-0.1087	Yes
179	UNC84B	1433832_at 1439238_at	21847	-3.545	-0.0733	Yes
180	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	21851	-3.587	-0.0375	Yes
181	EGR2	1427682_a_at 1427683_at	21887	-4.118	0.0022	Yes