Details for gene set V$SRF

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$SRF_Q4
Enrichment Score (ES)	-0.5125161
Normalized Enrichment Score (NES)	-1.6712607
Nominal p-value	0.0015243902
FDR q-value	0.060723532
FWER p-Value	0.242

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TPM1	1423049_a_at 1423721_at 1447713_at 1456623_at	287	2.058	0.0074	No
2	CKM	1417614_at	306	1.974	0.0263	No
3	CSDA	1435800_a_at 1451012_a_at	583	1.501	0.0286	No
4	SERTAD4	1454877_at	600	1.472	0.0425	No
5	SERPINH1	1450843_a_at 1456733_x_at	685	1.379	0.0524	No
6	DSTN	1417124_at	883	1.194	0.0553	No
7	RBBP7	1415775_at 1456227_x_at	948	1.148	0.0638	No
8	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	1105	1.052	0.0672	No
9	RSU1	1419259_at	1733	0.759	0.0459	No
10	RHOJ	1418892_at 1444982_at	1884	0.706	0.0461	No
11	EMILIN2	1435264_at	2158	0.626	0.0398	No
12	NR2F1	1418157_at 1422412_x_at	2215	0.608	0.0433	No
13	IHPK1	1422968_at 1422969_s_at 1438845_at 1438846_x_at 1452694_at	2327	0.585	0.0440	No
14	IGF2AS	1427394_at	2484	0.548	0.0423	No
15	VCL	1416156_at 1416157_at 1445256_at	2800	0.482	0.0327	No
16	STAG2	1421849_at 1450396_at	2813	0.478	0.0369	No
17	TANK	1421640_a_at 1441513_at 1459668_at	2926	0.461	0.0364	No
18	PPARG	1420715_a_at	3034	0.444	0.0359	No
19	AKAP12	1419706_a_at 1458235_at	3320	0.407	0.0268	No
20	MYL1	1452651_a_at	3756	0.359	0.0104	No
21	FOSB	1422134_at	3800	0.354	0.0120	No
22	TGIF	1422286_a_at	3824	0.352	0.0145	No
23	SDPR	1416778_at 1416779_at 1443832_s_at	4023	0.334	0.0087	No
24	HOXA3	1427433_s_at 1441070_at 1452421_at	4175	0.323	0.0050	No
25	NPR3	1435184_at 1448024_at 1450286_at	4467	0.303	-0.0054	No
26	SLC25A4	1424562_a_at 1424563_at 1434897_a_at 1455069_x_at	4688	0.288	-0.0126	No
27	HOXA5	1443803_x_at 1448926_at	4702	0.287	-0.0103	No
28	ADAMTSL1	1430313_at	4828	0.280	-0.0133	No
29	FGF17	1421523_at 1456239_at	4922	0.275	-0.0148	No
30	HERC1	1425378_at 1434060_at 1440437_at 1440903_at	4960	0.272	-0.0138	No
31	RASD2	1427343_at 1427344_s_at 1458433_at	5154	0.261	-0.0201	No
32	MAPKAPK2	1426648_at	5246	0.257	-0.0217	No
33	FGF8	1451882_a_at	5276	0.255	-0.0205	No
34	MYL9	1452670_at	5544	0.241	-0.0303	No
35	NLGN3	1456384_at	5600	0.238	-0.0305	No
36	TMOD1	1419863_at 1422754_at	5727	0.233	-0.0339	No
37	CTGF	1416953_at	5978	0.221	-0.0432	No
38	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	6451	0.202	-0.0629	No
39	SRD5A2	1422960_at	6474	0.201	-0.0619	No
40	PLCB3	1448661_at	6579	0.197	-0.0647	No
41	RARB	1454906_at	6847	0.188	-0.0751	No
42	EGR4	1449977_at	6920	0.185	-0.0766	No
43	HOXB5	1418415_at	7000	0.182	-0.0784	No
44	CNN1	1417917_at	7062	0.180	-0.0794	No
45	ASPH	1420959_at 1425274_at 1425275_at 1426015_s_at 1436455_at 1450058_at	7164	0.176	-0.0823	No
46	GADD45G	1453851_a_at	7507	0.165	-0.0963	No
47	SCOC	1416267_at 1430999_a_at	7516	0.165	-0.0951	No
48	CX3CL1	1415803_at 1415804_at 1421610_at 1441884_x_at	7686	0.159	-0.1012	No
49	ROCK2	1423592_at 1451041_at	7914	0.152	-0.1101	No
50	MYL7	1449071_at	8440	0.135	-0.1329	No
51	ASPA	1418472_at	8515	0.133	-0.1350	No
52	DVL3	1420457_at	8731	0.126	-0.1436	No
53	RAB30	1426452_a_at	8919	0.120	-0.1510	No
54	NPAS2	1421036_at 1421037_at	8952	0.119	-0.1513	No
55	NKX2-2	1421112_at	8992	0.117	-0.1519	No
56	SRF	1418255_s_at 1418256_at	9000	0.117	-0.1511	No
57	MSX1	1417127_at 1448601_s_at	9045	0.116	-0.1519	No
58	VGF	1436094_at	9063	0.115	-0.1516	No
59	ITGB1BP2	1423238_at	9337	0.107	-0.1630	No
60	INSM1	1421399_at 1455865_at	9589	0.100	-0.1736	No
61	RIMS1	1435667_at 1438305_at 1444393_at	9658	0.098	-0.1757	No
62	CALN1	1425846_a_at	10001	0.088	-0.1906	No
63	MID1	1422055_at 1438239_at 1441929_at 1443666_at	10013	0.087	-0.1902	No
64	EEF1B2	1448252_a_at	10092	0.085	-0.1929	No
65	TNMD	1417979_at	10185	0.082	-0.1963	No
66	ACTN1	1427385_s_at 1428585_at 1452415_at	10908	0.062	-0.2289	No
67	GPR20	1440021_at	11041	0.058	-0.2344	No
68	TAGLN	1423505_at	11175	0.055	-0.2400	No
69	PRM1	1415955_x_at 1437054_x_at 1439379_x_at	11244	0.053	-0.2426	No
70	SH3BGR	1422644_at	11263	0.052	-0.2429	No
71	CFL1	1448346_at 1455138_x_at	11312	0.051	-0.2446	No
72	TNNC1	1418370_at	11456	0.047	-0.2507	No
73	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	11495	0.045	-0.2520	No
74	IL17B	1431693_a_at	11546	0.044	-0.2538	No
75	NPPA	1456062_at	11646	0.041	-0.2580	No
76	EFHD1	1448507_at	11778	0.037	-0.2636	No
77	LRRTM4	1437214_at 1455937_at	11849	0.035	-0.2665	No
78	CRH	1457984_at	11970	0.031	-0.2717	No
79	JPH2	1421453_at 1455404_at	12032	0.029	-0.2742	No
80	TADA3L	1417467_a_at 1448719_at	12293	0.021	-0.2859	No
81	PPP2R3A	1455198_a_at	12354	0.020	-0.2885	No
82	KCNA1	1417416_at 1437230_at 1442413_at 1455785_at	12530	0.014	-0.2964	No
83	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	12584	0.013	-0.2987	No
84	MYH11	1418122_at 1448962_at	12590	0.012	-0.2988	No
85	PODN	1435180_at	12669	0.011	-0.3023	No
86	ATRX	1420945_at 1420946_at 1420947_at 1438750_at 1441014_at 1441771_at 1450051_at 1453734_at 1456832_at	12732	0.008	-0.3051	No
87	EDN1	1451924_a_at	13169	-0.006	-0.3250	No
88	TPM2	1419738_a_at 1419739_at 1425028_a_at 1449577_x_at	13437	-0.016	-0.3372	No
89	DLL1	1419204_at	13628	-0.022	-0.3457	No
90	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	13747	-0.027	-0.3508	No
91	SLC4A3	1418485_at 1453687_at	13810	-0.029	-0.3534	No
92	KCNMB1	1421400_at 1421401_at	13954	-0.034	-0.3596	No
93	MRGPRF	1425894_at	14007	-0.036	-0.3616	No
94	KRTCAP2	1417058_a_at 1417059_at	14544	-0.056	-0.3857	No
95	PPAP2B	1429514_at 1446850_at 1448908_at	14653	-0.061	-0.3901	No
96	ABR	1433477_at	14675	-0.062	-0.3904	No
97	HOXD10	1418606_at	14887	-0.070	-0.3994	No
98	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	14906	-0.071	-0.3995	No
99	PPP1R12A	1429487_at 1437734_at 1437735_at 1444762_at 1444834_at 1453163_at	14927	-0.072	-0.3997	No
100	EML4	1429612_at 1447838_x_at	15102	-0.081	-0.4069	No
101	FOXE3	1422393_at	15109	-0.081	-0.4064	No
102	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	15219	-0.087	-0.4105	No
103	BNC2	1438861_at 1440593_at 1459132_at	15393	-0.096	-0.4175	No
104	ELF4	1421337_at 1445778_at	15463	-0.098	-0.4197	No
105	TRIM46	1460568_at	15583	-0.104	-0.4241	No
106	EGR3	1421486_at 1436329_at	15625	-0.106	-0.4250	No
107	POU3F4	1422164_at 1422165_at	15648	-0.107	-0.4249	No
108	HOXC5	1439885_at 1450832_at 1456301_at	15852	-0.119	-0.4330	No
109	MMP14	1416572_at 1448383_at	16006	-0.128	-0.4388	No
110	COL23A1	1429209_at 1429210_at 1440911_at	16049	-0.131	-0.4394	No
111	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	16154	-0.138	-0.4428	No
112	FGFRL1	1447878_s_at 1451912_a_at	16259	-0.145	-0.4461	No
113	ARPC4	1423588_at 1423589_at	16393	-0.155	-0.4507	No
114	SRP54	1430476_at 1441233_at 1441480_at	16776	-0.185	-0.4664	No
115	MAP1A	1460566_at	16794	-0.187	-0.4653	No
116	SORT1	1423362_at 1423363_at 1450955_s_at	16829	-0.190	-0.4650	No
117	TGFB1I1	1418136_at	16996	-0.206	-0.4706	No
118	MYO1B	1427450_x_at 1441210_at 1447364_x_at 1448989_a_at 1448990_a_at 1458007_at 1459679_s_at	17062	-0.213	-0.4714	No
119	MYL6	1435041_at	17474	-0.257	-0.4878	No
120	HOXB4	1451761_at 1460379_at	17482	-0.258	-0.4855	No
121	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	17505	-0.261	-0.4839	No
122	DGKG	1419756_at 1431167_at 1449584_at	17511	-0.261	-0.4815	No
123	MYLK	1425504_at 1425505_at 1425506_at	17558	-0.268	-0.4810	No
124	BLOC1S1	1422614_s_at	17771	-0.293	-0.4878	No
125	MYO1E	1420159_at 1420160_s_at 1428509_at 1449753_at 1449941_at	17800	-0.296	-0.4861	No
126	KCNK3	1425341_at 1425342_a_at 1426058_a_at	17810	-0.297	-0.4835	No
127	LPP	1425673_at 1436714_at 1437235_x_at 1438271_at 1440167_s_at 1454899_at 1455314_at	18087	-0.336	-0.4929	No
128	TAF5L	1448195_at	18260	-0.362	-0.4972	No
129	CFL2	1418066_at 1418067_at 1431432_at	18279	-0.364	-0.4944	No
130	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	18287	-0.365	-0.4910	No
131	SVIL	1427662_at 1460694_s_at 1460735_at	18321	-0.370	-0.4889	No
132	ARHGEF17	1419938_s_at 1419939_at 1433682_at 1442357_at 1447441_at	18412	-0.380	-0.4892	No
133	PFN1	1449018_at	18536	-0.403	-0.4908	No
134	CACNA1B	1425812_a_at 1436602_x_at 1439612_at 1460608_at	18944	-0.486	-0.5047	No
135	TPM3	1427260_a_at 1427567_a_at 1436958_x_at 1449996_a_at 1449997_at	18989	-0.497	-0.5017	No
136	ESRRA	1442864_at 1460652_at	19001	-0.499	-0.4973	No
137	ACTG2	1422340_a_at	19334	-0.581	-0.5067	Yes
138	CHD2	1444246_at 1445843_at	19401	-0.597	-0.5038	Yes
139	H2AFX	1416746_at	19410	-0.599	-0.4982	Yes
140	ACTA1	1427735_a_at	19508	-0.620	-0.4964	Yes
141	CSRP1	1425810_a_at 1425811_a_at	19531	-0.628	-0.4912	Yes
142	MUS81	1431885_a_at 1450432_s_at	19797	-0.707	-0.4963	Yes
143	TAZ	1416207_at 1453785_at	19839	-0.721	-0.4910	Yes
144	JMJD1A	1426810_at	19993	-0.776	-0.4902	Yes
145	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	20038	-0.794	-0.4843	Yes
146	PHF12	1434922_at 1453579_at	20058	-0.802	-0.4772	Yes
147	SGK	1416041_at	20087	-0.813	-0.4704	Yes
148	RUNDC1	1454829_at	20199	-0.848	-0.4670	Yes
149	GRK6	1437436_s_at 1450480_a_at 1451672_at	20236	-0.862	-0.4600	Yes
150	FOS	1423100_at	20292	-0.887	-0.4537	Yes
151	NCOA6	1423374_at	20472	-0.967	-0.4523	Yes
152	VASP	1451097_at	20520	-0.995	-0.4445	Yes
153	SLC35A2	1422827_x_at 1432533_a_at 1436664_a_at 1439433_a_at 1453858_at 1457024_x_at	20549	-1.014	-0.4357	Yes
154	TBL1X	1434643_at 1434644_at 1441435_at 1446736_at 1455042_at	20580	-1.035	-0.4267	Yes
155	DDX17	1437773_x_at 1439037_at 1452155_a_at	20612	-1.055	-0.4176	Yes
156	FLNA	1426677_at	20659	-1.088	-0.4088	Yes
157	IER2	1416442_at	20846	-1.216	-0.4052	Yes
158	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20881	-1.246	-0.3944	Yes
159	DUSP2	1450698_at	20949	-1.298	-0.3845	Yes
160	FST	1421365_at 1434458_at	20955	-1.305	-0.3717	Yes
161	STAT5B	1422102_a_at 1422103_a_at	21046	-1.408	-0.3617	Yes
162	AGRP	1421690_s_at 1457362_at	21059	-1.424	-0.3481	Yes
163	DUSP5	1437199_at	21089	-1.461	-0.3348	Yes
164	RERE	1454670_at	21197	-1.582	-0.3239	Yes
165	NR4A1	1416505_at	21368	-1.829	-0.3135	Yes
166	MAP2K6	1426850_a_at 1459292_at	21369	-1.830	-0.2952	Yes
167	JUNB	1415899_at	21415	-1.913	-0.2781	Yes
168	DUSP6	1415834_at	21419	-1.924	-0.2591	Yes
169	MCL1	1416880_at 1416881_at 1437527_x_at 1448503_at 1456243_x_at 1456381_x_at	21588	-2.295	-0.2439	Yes
170	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	21654	-2.503	-0.2218	Yes
171	RASSF2	1428392_at 1444889_at	21668	-2.567	-0.1968	Yes
172	ACTB	1419734_at 1436722_a_at 1440365_at AFFX-b-ActinMur/M12481_3_at AFFX-b-ActinMur/M12481_5_at AFFX-b-ActinMur/M12481_M_at	21797	-3.181	-0.1709	Yes
173	ANXA6	1415818_at 1429246_a_at 1429247_at 1442288_at	21805	-3.240	-0.1389	Yes
174	EGR1	1417065_at	21809	-3.263	-0.1064	Yes
175	CDKN1B	1419497_at 1434045_at	21843	-3.508	-0.0729	Yes
176	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	21851	-3.587	-0.0374	Yes
177	EGR2	1427682_a_at 1427683_at	21887	-4.118	0.0022	Yes