Details for gene set V$FREAC2

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$FREAC2_01
Enrichment Score (ES)	-0.50753695
Normalized Enrichment Score (NES)	-1.6770246
Nominal p-value	0.0
FDR q-value	0.06712608
FWER p-Value	0.223

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	GNPNAT1	1423156_at 1423157_at 1423158_at 1457807_at 1458196_at	200	2.370	0.0148	No
2	MPP6	1440396_at 1440490_at 1449348_at	726	1.335	0.0041	No
3	ETV5	1420998_at 1428142_at 1450082_s_at	848	1.227	0.0109	No
4	DSTN	1417124_at	883	1.194	0.0214	No
5	NDRG1	1423413_at 1450976_at 1456174_x_at	1016	1.111	0.0266	No
6	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	1105	1.052	0.0332	No
7	MED8	1431423_a_at 1442417_at	1220	0.990	0.0379	No
8	STOML2	1448774_at	1521	0.842	0.0327	No
9	EGLN1	1423785_at 1443389_at 1451110_at	1712	0.767	0.0317	No
10	SCRN3	1426916_at 1426917_s_at 1436573_at	1749	0.752	0.0376	No
11	PAPPA	1427633_a_at 1432591_at 1432592_at 1459375_at	1802	0.732	0.0426	No
12	CDKN1A	1421679_a_at 1424638_at	1903	0.701	0.0451	No
13	THRA	1426997_at 1443952_at 1454675_at	2216	0.607	0.0369	No
14	FOXB1	1420705_at	2294	0.590	0.0393	No
15	MCC	1438081_at 1442741_at 1442892_at 1459524_at 1459752_at	2304	0.589	0.0449	No
16	PELI2	1419006_s_at 1436966_at 1437181_at	2410	0.566	0.0457	No
17	KCTD15	1435339_at	2606	0.523	0.0421	No
18	ADAM12	1421171_at 1421172_at	2668	0.511	0.0444	No
19	RPS18	1421837_at 1421838_at 1435712_a_at 1448739_x_at 1450390_x_at 1455572_x_at	3150	0.427	0.0266	No
20	E2F3	1427462_at 1434564_at	3343	0.405	0.0219	No
21	ELMO1	1424523_at 1446610_at 1450208_a_at	3445	0.393	0.0212	No
22	SLC2A4	1415958_at 1415959_at	3554	0.382	0.0201	No
23	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	4253	0.317	-0.0088	No
24	NGEF	1448978_at	4342	0.311	-0.0097	No
25	ZADH2	1451277_at	4453	0.304	-0.0117	No
26	PLUNC	1420347_at	4569	0.296	-0.0140	No
27	UTX	1427235_at 1427672_a_at 1440524_at 1441201_at 1445198_at 1446234_at 1446278_at	4656	0.290	-0.0150	No
28	FGF20	1421677_at	4743	0.284	-0.0161	No
29	SH3GL3	1432103_a_at	5074	0.265	-0.0285	No
30	PRKCH	1422079_at 1434248_at	5249	0.257	-0.0340	No
31	UBE2H	1418631_at 1418632_at 1428791_at 1438971_x_at 1447374_at 1459930_at	5415	0.249	-0.0390	No
32	HOXD9	1419126_at	5433	0.247	-0.0373	No
33	CDKN1C	1417649_at	5595	0.239	-0.0423	No
34	SLC38A3	1418706_at 1446013_at	5788	0.230	-0.0488	No
35	GREM1	1425357_a_at	6302	0.209	-0.0703	No
36	BRIP1	1458427_at	6395	0.204	-0.0725	No
37	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	6451	0.202	-0.0729	No
38	PCF11	1427159_at 1427160_at 1428724_at 1456489_at	6484	0.201	-0.0724	No
39	TCF15	1449592_at	6488	0.201	-0.0705	No
40	WEE1	1416773_at 1416774_at	6589	0.197	-0.0731	No
41	NRG1	1456524_at	6603	0.197	-0.0717	No
42	ERG	1425370_a_at 1440244_at	6624	0.196	-0.0706	No
43	CGA	1418549_at	6671	0.194	-0.0708	No
44	DNAJB12	1421032_a_at 1435886_at	6678	0.194	-0.0691	No
45	HR	1422110_at 1435950_at	6722	0.192	-0.0692	No
46	SLITRK5	1429718_at	6726	0.192	-0.0673	No
47	IGSF4	1417376_a_at 1417377_at 1417378_at 1431611_a_at	6898	0.186	-0.0733	No
48	VIT	1426231_at	6917	0.185	-0.0723	No
49	IRS4	1441429_at	7032	0.181	-0.0757	No
50	CPN1	1417745_at 1440576_at	7121	0.178	-0.0779	No
51	IGF1	1419519_at 1436497_at 1437401_at 1452014_a_at	7365	0.169	-0.0874	No
52	MRVI1	1422245_a_at 1459665_s_at	7404	0.168	-0.0875	No
53	CLDN8	1449091_at	7409	0.168	-0.0859	No
54	EVI1	1423011_at 1438325_at	7541	0.164	-0.0903	No
55	FGF12	1440270_at 1451693_a_at 1460137_at	7612	0.162	-0.0919	No
56	RASD1	1423619_at	7730	0.158	-0.0957	No
57	EN1	1418618_at	7825	0.155	-0.0984	No
58	HAND2	1422221_at 1436041_at 1443854_at 1446812_at	7912	0.152	-0.1009	No
59	PPP2R2B	1426621_a_at	8070	0.146	-0.1066	No
60	NFIB	1416293_at 1427680_a_at 1434101_at 1434102_at 1438072_at 1438244_at 1442214_at 1444800_at 1448288_at 1454834_at	8297	0.140	-0.1156	No
61	HOXC4	1422870_at	8342	0.138	-0.1162	No
62	GPR4	1457745_at	8365	0.137	-0.1158	No
63	DOCK3	1428852_at 1452930_at	8480	0.134	-0.1197	No
64	STK3	1418512_at 1418513_at 1446289_at 1446627_at 1449114_at	8592	0.130	-0.1235	No
65	PPM1D	1434142_at 1449092_at 1459069_at	8598	0.130	-0.1224	No
66	PCSK1	1421396_at	8667	0.128	-0.1242	No
67	TCF1	1421234_at	8709	0.126	-0.1249	No
68	TGFB3	1417455_at	8977	0.118	-0.1359	No
69	NAP1L3	1418500_at	9247	0.110	-0.1472	No
70	POU3F3	1422331_at 1435197_at	9316	0.108	-0.1492	No
71	FGF9	1420795_at 1438718_at 1445258_at	9580	0.100	-0.1603	No
72	NRAP	1421253_at	9603	0.099	-0.1603	No
73	BMP5	1421282_at 1421283_at 1444470_x_at 1455851_at	9632	0.099	-0.1606	No
74	HOXA11	1420414_at	9646	0.098	-0.1602	No
75	SMAD5	1421047_at 1433641_at 1451873_a_at	9756	0.095	-0.1643	No
76	EPHB3	1451550_at	9964	0.089	-0.1729	No
77	MID1	1422055_at 1438239_at 1441929_at 1443666_at	10013	0.087	-0.1742	No
78	ENPP2	1415894_at 1443224_at 1448136_at	10163	0.083	-0.1802	No
79	HOXC8	1452412_at	10324	0.079	-0.1868	No
80	BMP2	1423635_at	10801	0.064	-0.2080	No
81	GPRC5C	1424450_at 1452947_at	10822	0.064	-0.2083	No
82	NFIX	1423493_a_at 1436363_a_at 1436364_x_at 1451443_at 1459909_at	10848	0.063	-0.2088	No
83	EYA1	1421727_at 1443117_at 1457424_at	10984	0.060	-0.2144	No
84	RORA	1420583_a_at 1424034_at 1424035_at 1436325_at 1436326_at 1441085_at 1443511_at 1443647_at 1446360_at 1455165_at 1457177_at 1458129_at	11080	0.057	-0.2182	No
85	PURA	1420628_at 1438219_at 1449934_at 1453783_at 1456898_at	11506	0.045	-0.2373	No
86	PITPNC1	1428025_s_at 1428878_a_at 1428879_at 1431074_a_at 1435066_at 1441574_at 1452939_a_at 1452940_x_at 1453750_x_at 1455204_at	11572	0.043	-0.2398	No
87	AP4M1	1418846_at	11922	0.033	-0.2555	No
88	PITX2	1424797_a_at 1450482_a_at	12020	0.029	-0.2597	No
89	FOSL2	1422931_at	12045	0.029	-0.2605	No
90	PLAG1	1421745_at 1443943_at	12073	0.028	-0.2615	No
91	SCAMP1	1426775_s_at 1453054_at	12080	0.027	-0.2615	No
92	MAP4K5	1427083_a_at 1427084_a_at 1427376_a_at 1440059_at 1445426_at 1446348_at 1447204_at	12098	0.027	-0.2620	No
93	PRDM1	1420425_at 1444997_at	12691	0.010	-0.2891	No
94	SYT1	1421990_at 1431191_a_at 1433884_at 1438282_at 1442557_at 1457497_at	12728	0.009	-0.2907	No
95	LMO3	1455754_at	12797	0.007	-0.2937	No
96	ACCN1	1417994_a_at	12802	0.006	-0.2939	No
97	CD109	1425658_at 1436346_at	12863	0.005	-0.2966	No
98	EN2	1418868_at	13039	-0.002	-0.3046	No
99	RASGEF1B	1454742_at	13171	-0.006	-0.3105	No
100	PDE7A	1423313_at 1423314_s_at 1450933_at 1451839_a_at 1458218_s_at	13187	-0.007	-0.3112	No
101	DUSP4	1428834_at	13260	-0.009	-0.3144	No
102	CDX2	1422074_at 1422075_at	13265	-0.010	-0.3145	No
103	MITF	1422025_at 1455214_at	13334	-0.012	-0.3175	No
104	ROR1	1429312_s_at 1429313_at 1442067_at 1451014_at 1457413_at	13467	-0.016	-0.3234	No
105	MMP13	1417256_at	13898	-0.032	-0.3428	No
106	SYT6	1420188_at 1426106_a_at 1449766_at 1449767_x_at	13964	-0.034	-0.3455	No
107	MRGPRF	1425894_at	14007	-0.036	-0.3470	No
108	HBP1	1432143_a_at 1438430_at 1446269_at 1460367_at	14032	-0.037	-0.3478	No
109	PCDH18	1422889_at 1422890_at 1430427_a_at	14124	-0.041	-0.3515	No
110	KCNQ5	1427426_at 1441071_at	14198	-0.044	-0.3545	No
111	PPAP2B	1429514_at 1446850_at 1448908_at	14653	-0.061	-0.3747	No
112	HIPK1	1421298_a_at 1424540_at 1457515_at	14871	-0.070	-0.3840	No
113	CHCHD7	1440158_x_at 1444318_at 1446844_at 1454640_at	14994	-0.075	-0.3888	No
114	NFRKB	1434753_at 1445551_at	15111	-0.082	-0.3933	No
115	PROX1	1421336_at 1437894_at 1457432_at	15380	-0.095	-0.4047	No
116	CYLN2	1422984_at	15547	-0.102	-0.4113	No
117	CLPX	1423447_at 1439342_at	15570	-0.103	-0.4113	No
118	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	15601	-0.105	-0.4116	No
119	POU3F4	1422164_at 1422165_at	15648	-0.107	-0.4126	No
120	CD2AP	1420906_at 1420907_at 1420908_at 1460140_at	15765	-0.114	-0.4168	No
121	SLC34A3	1439519_at	15998	-0.128	-0.4262	No
122	SEPP1	1452141_a_at	16296	-0.148	-0.4383	No
123	AKT2	1421324_a_at 1424480_s_at 1455703_at	16703	-0.180	-0.4552	No
124	CXXC5	1431469_a_at 1448960_at	16705	-0.180	-0.4534	No
125	ARID4A	1436191_at 1438464_at 1456420_at	16749	-0.183	-0.4535	No
126	BCL11A	1419406_a_at 1426552_a_at 1446293_at 1447334_at 1447335_x_at 1453814_at 1456632_at	17203	-0.227	-0.4721	No
127	PAK1	1420979_at 1420980_at 1450070_s_at 1459029_at	17237	-0.231	-0.4713	No
128	ID2	1422537_a_at 1435176_a_at 1453596_at	17408	-0.251	-0.4765	No
129	INHBA	1422053_at 1458291_at	17416	-0.252	-0.4743	No
130	HOXB4	1451761_at 1460379_at	17482	-0.258	-0.4747	No
131	PIK3C2A	1421023_at 1425862_a_at 1443655_s_at	17530	-0.264	-0.4742	No
132	SNX13	1435251_at 1444141_at 1454938_at	17564	-0.269	-0.4730	No
133	CREBL2	1435085_at 1442738_at	17581	-0.271	-0.4710	No
134	MARCKS	1415971_at 1415972_at 1430311_at 1437034_x_at 1456028_x_at	18104	-0.339	-0.4916	No
135	HEBP2	1418917_at 1446415_at 1449271_a_at	18139	-0.343	-0.4897	No
136	AXL	1423586_at 1438621_x_at	18249	-0.360	-0.4910	No
137	SIN3A	1419101_at 1419102_at 1419900_at 1449343_s_at	18455	-0.386	-0.4966	No
138	EXT1	1417730_at 1439877_at 1440011_at 1440092_at 1456655_at 1458054_at 1458296_at	18463	-0.388	-0.4930	No
139	RAD21	1416161_at 1416162_at 1455938_x_at	18519	-0.400	-0.4914	No
140	HHIP	1421426_at 1437933_at 1438083_at 1455277_at	18641	-0.421	-0.4928	No
141	TPP2	1421893_a_at 1421894_a_at 1430575_a_at 1430576_at 1438264_a_at	18662	-0.426	-0.4894	No
142	PLCB2	1452481_at	18698	-0.433	-0.4866	No
143	MAFF	1418936_at	18877	-0.470	-0.4900	No
144	AP1G2	1419113_at	19144	-0.530	-0.4969	No
145	ATBF1	1420649_at 1420650_at 1429725_at 1445941_at 1446094_at 1449947_s_at 1453267_at 1460006_at	19148	-0.532	-0.4917	No
146	DTNA	1419223_a_at 1425292_at 1426066_a_at 1427588_a_at 1429768_at 1447280_at 1456069_at 1458908_at	19249	-0.561	-0.4906	No
147	CHD2	1444246_at 1445843_at	19401	-0.597	-0.4915	No
148	ABTB1	1417000_at	19726	-0.684	-0.4995	No
149	KLF3	1421604_a_at 1429360_at 1431630_a_at 1441200_at 1442920_at 1454666_at	19902	-0.745	-0.5000	Yes
150	FBXW7	1424986_s_at 1451558_at	19952	-0.763	-0.4946	Yes
151	TBCC	1424644_at 1451423_at	20034	-0.792	-0.4903	Yes
152	FOXP2	1422014_at 1438231_at 1438232_at 1440108_at 1441365_at 1458191_at	20038	-0.794	-0.4824	Yes
153	DHX8	1426629_at	20059	-0.803	-0.4752	Yes
154	TRPC4	1423579_a_at 1446366_at 1451033_a_at	20106	-0.820	-0.4690	Yes
155	TIAM1	1418057_at 1444373_at 1453887_a_at	20128	-0.828	-0.4616	Yes
156	TBX4	1426321_at 1456033_at	20283	-0.883	-0.4598	Yes
157	KLF12	1439846_at 1439847_s_at 1441040_at 1455521_at	20350	-0.912	-0.4536	Yes
158	CPNE1	1433439_at	20367	-0.916	-0.4451	Yes
159	LMO4	1420981_a_at 1439651_at	20457	-0.961	-0.4395	Yes
160	RBM4	1416920_at 1437322_at 1455517_at	20603	-1.050	-0.4355	Yes
161	KBTBD2	1451214_at	20658	-1.088	-0.4270	Yes
162	RARA	1450180_a_at	20869	-1.233	-0.4242	Yes
163	IL6ST	1421239_at 1437303_at 1452843_at 1460295_s_at	20942	-1.294	-0.4145	Yes
164	MLL5	1427236_a_at 1432601_at 1434704_at 1439107_a_at 1439108_at	20951	-1.299	-0.4017	Yes
165	MBNL2	1433754_at 1436858_at 1446475_at 1455827_at 1457237_at 1457477_at	21048	-1.411	-0.3919	Yes
166	PHF15	1430081_at 1455345_at	21049	-1.412	-0.3776	Yes
167	SQSTM1	1440076_at 1442237_at 1444021_at 1450957_a_at	21130	-1.503	-0.3661	Yes
168	SMAD1	1416081_at 1448208_at 1459843_s_at	21175	-1.559	-0.3523	Yes
169	BDNF	1422168_a_at 1422169_a_at	21186	-1.573	-0.3369	Yes
170	RAB6IP1	1424015_at	21187	-1.573	-0.3210	Yes
171	TOB1	1423176_at 1440844_at	21205	-1.593	-0.3057	Yes
172	RBM16	1426826_at 1438419_at 1443848_at 1455310_at	21270	-1.679	-0.2917	Yes
173	TXNIP	1415996_at 1415997_at	21404	-1.898	-0.2786	Yes
174	EMP1	1416529_at 1459171_at	21426	-1.933	-0.2600	Yes
175	BCL11B	1440137_at 1441762_at 1450339_a_at	21512	-2.120	-0.2425	Yes
176	DUSP1	1448830_at	21513	-2.123	-0.2211	Yes
177	BCAS3	1423528_at 1428454_at 1457817_at 1458557_at	21531	-2.161	-0.2000	Yes
178	HIBADH	1423780_at 1435967_s_at 1442848_at 1446297_at	21610	-2.375	-0.1796	Yes
179	DHRS3	1448390_a_at	21673	-2.605	-0.1561	Yes
180	BCL9	1445859_at 1446767_at 1451574_at 1455565_at	21776	-3.077	-0.1297	Yes
181	NNT	1416105_at 1432608_at 1456573_x_at	21813	-3.281	-0.0982	Yes
182	EZH1	1418290_a_at 1429629_at 1429630_at 1444604_at 1449023_a_at	21820	-3.327	-0.0649	Yes
183	UHRF2	1447217_at 1454920_at 1457070_at	21824	-3.343	-0.0312	Yes
184	MBNL1	1416904_at 1439686_at 1440315_at 1445106_at 1457924_at	21851	-3.587	0.0038	Yes