Details for gene set V$E2F1

Table: GSEA Results Summary

Dataset	Set_02_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	V$E2F1_Q6
Enrichment Score (ES)	0.37390038
Normalized Enrichment Score (NES)	1.3186406
Nominal p-value	0.020833334
FDR q-value	0.25538284
FWER p-Value	0.999

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	21	4.111	0.0427	Yes
2	POLE4	1423371_at 1423372_at 1432286_at 1444739_at	65	3.235	0.0751	Yes
3	HNRPA2B1	1420365_a_at 1433829_a_at 1433830_at 1434047_x_at	129	2.707	0.1009	Yes
4	MCM6	1416251_at 1438852_x_at 1447756_x_at	291	2.041	0.1152	Yes
5	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	293	2.032	0.1367	Yes
6	GRIA4	1421351_at 1435722_at 1436772_at 1440891_at 1443285_at 1458230_at 1460097_at	297	2.009	0.1579	Yes
7	NRK	1436399_s_at 1450078_at 1450079_at	341	1.896	0.1761	Yes
8	MYC	1424942_a_at	529	1.566	0.1842	Yes
9	MCM4	1416214_at 1436708_x_at	574	1.511	0.1982	Yes
10	SFRS7	1424033_at 1424883_s_at 1436871_at	792	1.274	0.2017	Yes
11	ATF5	1425927_a_at	915	1.171	0.2086	Yes
12	PRPS1	1416052_at	1029	1.101	0.2151	Yes
13	SNRPD1	1416336_s_at	1039	1.093	0.2263	Yes
14	PHF5A	1424170_at	1064	1.077	0.2366	Yes
15	ARHGAP6	1417704_a_at 1451867_x_at 1456333_a_at	1069	1.075	0.2478	Yes
16	FKBP5	1416125_at 1447736_at 1448231_at 1458089_at	1145	1.033	0.2554	Yes
17	CDC25A	1417131_at 1417132_at 1445995_at	1166	1.019	0.2653	Yes
18	SUV39H1	1427382_a_at 1432227_at 1432236_a_at	1205	1.000	0.2741	Yes
19	CDCA7	1428069_at 1445681_at	1228	0.987	0.2836	Yes
20	H2AFV	1428029_a_at 1436596_at	1230	0.985	0.2940	Yes
21	SLC25A3	1416300_a_at 1440302_at	1385	0.901	0.2965	Yes
22	DNAJC9	1426473_at	1398	0.891	0.3054	Yes
23	TOPBP1	1452241_at 1458480_at	1408	0.885	0.3144	Yes
24	KPNB1	1416925_at 1434357_a_at 1448526_at 1451967_x_at	1552	0.829	0.3167	Yes
25	RANBP1	1422547_at	1682	0.778	0.3190	Yes
26	EZH2	1416544_at 1444263_at	1694	0.773	0.3267	Yes
27	GMNN	1417506_at	1722	0.763	0.3336	Yes
28	UNG	1425753_a_at	1740	0.755	0.3408	Yes
29	HMGA1	1416184_s_at	1893	0.703	0.3413	Yes
30	CDC5L	1428092_at 1460429_at	1940	0.687	0.3465	Yes
31	AK2	1448450_at 1448451_at	2028	0.660	0.3495	Yes
32	RQCD1	1450887_at	2076	0.646	0.3542	Yes
33	PCNA	1417947_at	2101	0.641	0.3599	Yes
34	PB1	1426877_a_at 1426878_at 1427266_at 1442603_at	2184	0.618	0.3627	Yes
35	MSH5	1430771_a_at 1449537_at	2205	0.610	0.3682	Yes
36	POLE2	1427094_at 1431440_at	2223	0.606	0.3739	Yes
37	SUMO1	1438289_a_at 1444557_at 1451005_at 1456349_x_at	2620	0.521	0.3612	No
38	STAG2	1421849_at 1450396_at	2813	0.478	0.3575	No
39	PRPS2	1420637_at 1420638_at 1443418_at 1454843_at	2850	0.472	0.3609	No
40	MRPL40	1448849_at	3077	0.437	0.3551	No
41	SSBP3	1425940_a_at 1427917_s_at 1439136_at 1443554_at 1457560_at 1458749_at	3096	0.435	0.3589	No
42	SLC9A5	1420070_a_at 1455760_at	3188	0.423	0.3592	No
43	E2F3	1427462_at 1434564_at	3343	0.405	0.3565	No
44	MAP3K7	1419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at	3444	0.393	0.3560	No
45	HNRPR	1427129_a_at 1438807_at 1452030_a_at	3538	0.384	0.3558	No
46	KBTBD7	1428192_at 1439865_at 1452700_s_at	3617	0.374	0.3562	No
47	PIM1	1423006_at 1435458_at	3779	0.357	0.3526	No
48	RPS6KA5	1431050_at 1437625_at 1439004_at 1440343_at	3843	0.350	0.3535	No
49	NOLC1	1428869_at 1428870_at 1450087_a_at	4049	0.333	0.3476	No
50	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	4253	0.317	0.3416	No
51	EPHB1	1455188_at	4510	0.300	0.3330	No
52	POLD1	1448187_at 1456055_x_at	4661	0.290	0.3292	No
53	ACO2	1436934_s_at 1442102_at 1451002_at	4712	0.286	0.3300	No
54	MCM8	1429557_at	4954	0.272	0.3218	No
55	GPRC5B	1424613_at 1451411_at	5079	0.265	0.3189	No
56	PRPF4B	1425497_a_at 1425498_at 1436427_at 1451732_at 1451909_a_at 1455696_a_at	5381	0.250	0.3077	No
57	PKMYT1	1418481_at 1438601_at	5674	0.234	0.2968	No
58	FBXO5	1429499_at	5792	0.230	0.2939	No
59	BRMS1L	1452850_s_at 1460443_at	5955	0.222	0.2888	No
60	MCM3	1420029_at 1426653_at	6514	0.200	0.2653	No
61	POLD3	1426838_at 1426839_at 1443733_x_at 1459647_at	6539	0.199	0.2663	No
62	CLSPN	1441984_at 1456280_at	7044	0.181	0.2451	No
63	ORC1L	1422663_at 1443172_at	7176	0.176	0.2409	No
64	POLR2A	1422311_a_at 1426242_at 1458710_at	7249	0.174	0.2395	No
65	CSPG2	1421694_a_at 1427256_at 1427257_at 1433043_at 1433044_at 1447586_at 1447887_x_at 1459767_x_at	7342	0.170	0.2371	No
66	CORT	1449820_at	7450	0.167	0.2339	No
67	SFRS12	1427134_at 1427135_at 1427136_s_at 1458056_at	7642	0.161	0.2268	No
68	PAQR4	1423101_at	7684	0.159	0.2267	No
69	SEMA6A	1421414_a_at 1425903_at 1436458_at	7965	0.150	0.2154	No
70	PAX6	1419271_at 1425960_s_at 1437816_at 1452526_a_at 1456342_at	8486	0.134	0.1929	No
71	PPM1D	1434142_at 1449092_at 1459069_at	8598	0.130	0.1892	No
72	GABRB3	1421189_at 1421190_at 1435021_at	8628	0.129	0.1892	No
73	PCSK1	1421396_at	8667	0.128	0.1889	No
74	ARHGAP11A	1438434_at	9153	0.113	0.1678	No
75	FANCD2	1430916_at 1438339_at 1439091_at 1442092_at	9224	0.111	0.1657	No
76	STMN1	1415849_s_at	9641	0.098	0.1477	No
77	DNMT1	1422946_a_at 1435122_x_at 1445637_at 1447877_x_at	10604	0.071	0.1042	No
78	GATA1	1449232_at	10714	0.067	0.1000	No
79	FANCC	1442265_at 1447632_at 1450861_at	10825	0.064	0.0956	No
80	CACNA1G	1423365_at	10844	0.063	0.0954	No
81	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	11210	0.054	0.0792	No
82	CDT1	1424143_a_at 1424144_at 1455791_at	11254	0.053	0.0778	No
83	GSPT1	1426736_at 1426737_at 1435000_at 1446550_at 1452168_x_at 1455173_at	11318	0.051	0.0755	No
84	CTNND2	1422592_at 1438891_at 1443638_at 1445114_at 1447552_s_at 1456116_at	11644	0.041	0.0610	No
85	SALL1	1450489_at	11673	0.040	0.0601	No
86	STAG1	1421939_a_at 1421940_at 1431921_a_at 1434189_at 1435731_x_at 1445145_at 1445652_at 1450420_at	11767	0.037	0.0562	No
87	AP4M1	1418846_at	11922	0.033	0.0495	No
88	IPO7	1442511_at 1454955_at 1458165_at	12189	0.024	0.0375	No
89	KCNS2	1421342_at 1441211_at 1457325_at	12245	0.023	0.0353	No
90	ING3	1422805_a_at 1422806_x_at 1450760_a_at 1460082_at	12372	0.019	0.0297	No
91	ATE1	1420036_at 1420651_at 1420652_at 1435173_at 1446611_at 1449709_s_at	12662	0.011	0.0165	No
92	PODN	1435180_at	12669	0.011	0.0164	No
93	SYNGR4	1418875_at	12957	0.001	0.0032	No
94	RASAL2	1436910_at 1444671_at	13311	-0.011	-0.0129	No
95	ADAMTS2	1435990_at 1455720_at 1457058_at	13338	-0.012	-0.0140	No
96	MSH2	1416988_at 1447888_x_at	13508	-0.018	-0.0216	No
97	ILF3	1422546_at 1436802_at 1460669_at	13882	-0.032	-0.0384	No
98	HS6ST3	1421599_at	13926	-0.033	-0.0400	No
99	PVRL1	1438111_at 1438421_at 1440131_at 1446488_at 1450819_at	14092	-0.040	-0.0471	No
100	RPS20	1456373_x_at 1456436_x_at	14351	-0.049	-0.0585	No
101	RRM2	1416120_at 1434437_x_at 1448226_at	14376	-0.050	-0.0590	No
102	HCN3	1451023_at	14379	-0.050	-0.0586	No
103	NELL2	1423560_at 1423561_at	14603	-0.059	-0.0682	No
104	FHOD1	1435557_at	14802	-0.067	-0.0766	No
105	FMO4	1425799_at 1444852_at	14834	-0.068	-0.0773	No
106	HIRA	1436241_s_at 1450049_a_at 1450050_at 1459103_at	14848	-0.069	-0.0772	No
107	HOXC10	1439798_at	14855	-0.069	-0.0767	No
108	KCNA6	1421568_at 1441049_at 1456954_at	14879	-0.070	-0.0770	No
109	RBBP4	1434892_x_at 1442443_at 1454791_a_at 1454875_a_at 1456260_at	14914	-0.071	-0.0778	No
110	CBX3	1432628_at 1454305_at	14939	-0.073	-0.0781	No
111	EED	1448653_at	15112	-0.082	-0.0852	No
112	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	15219	-0.087	-0.0891	No
113	PRKDC	1451576_at	15265	-0.089	-0.0902	No
114	MCM2	1434079_s_at 1448777_at	15390	-0.096	-0.0949	No
115	EFNA5	1421796_a_at 1436866_at 1440052_at 1446383_at 1451930_at	15483	-0.099	-0.0981	No
116	HTF9C	1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at	15505	-0.100	-0.0980	No
117	CCNT1	1419313_at 1456477_at	15687	-0.110	-0.1051	No
118	CDC6	1417019_a_at	15905	-0.122	-0.1138	No
119	KLF5	1430255_at 1451021_a_at 1451739_at	16500	-0.163	-0.1394	No
120	TYRO3	1425248_a_at 1425249_a_at	16578	-0.169	-0.1411	No
121	AP1S1	1416087_at	16601	-0.170	-0.1403	No
122	DNAJC5G	1437814_at	16663	-0.177	-0.1412	No
123	ATAD2	1436174_at 1443146_at 1443229_at	16665	-0.177	-0.1394	No
124	ARID4A	1436191_at 1438464_at 1456420_at	16749	-0.183	-0.1413	No
125	HNRPD	1425142_a_at 1446083_at	16786	-0.186	-0.1409	No
126	HNRPUL1	1451984_at	17172	-0.225	-0.1562	No
127	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	17821	-0.299	-0.1828	No
128	USP37	1434242_at 1438212_at	17828	-0.299	-0.1799	No
129	RBL1	1424156_at 1425166_at 1432604_at 1454293_at	17910	-0.312	-0.1803	No
130	FANCG	1420960_at	17967	-0.320	-0.1795	No
131	TBX6	1449868_at	18194	-0.351	-0.1862	No
132	SP3	1431804_a_at 1459360_at	18430	-0.383	-0.1929	No
133	RAVER1	1427110_at 1427111_s_at 1444966_at	18448	-0.386	-0.1896	No
134	YBX2	1420762_a_at	18577	-0.408	-0.1911	No
135	SFRS10	1419543_a_at 1427432_a_at 1441466_at 1446496_at	18620	-0.418	-0.1886	No
136	CTCF	1418330_at 1449042_at	18744	-0.444	-0.1895	No
137	IL4I1	1419192_at	18767	-0.448	-0.1858	No
138	E2F1	1417878_at 1431875_a_at 1447840_x_at	18940	-0.485	-0.1885	No
139	ALDH6A1	1448104_at	19132	-0.529	-0.1917	No
140	MAZ	1427099_at	19156	-0.534	-0.1871	No
141	PHC1	1423212_at	19267	-0.564	-0.1861	No
142	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	19353	-0.584	-0.1838	No
143	CASP8AP2	1449217_at	19404	-0.598	-0.1798	No
144	MXD3	1422970_at 1438847_at 1448878_at	19438	-0.605	-0.1749	No
145	MYH10	1441057_at 1452740_at	19960	-0.765	-0.1907	No
146	ACBD6	1452601_a_at 1453199_at	20002	-0.779	-0.1843	No
147	H2AFZ	1441370_at	20272	-0.877	-0.1873	No
148	NUP62	1415925_a_at 1415926_at 1437612_at 1438917_x_at 1447905_x_at 1448150_at	20398	-0.933	-0.1832	No
149	PHF13	1455175_at	20428	-0.946	-0.1745	No
150	USP52	1426700_a_at	20584	-1.037	-0.1706	No
151	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	20881	-1.246	-0.1709	No
152	ZCCHC8	1423755_at 1441639_at	20886	-1.249	-0.1578	No
153	FLI1	1422024_at 1433512_at 1441584_at	21006	-1.360	-0.1489	No
154	PHF15	1430081_at 1455345_at	21049	-1.412	-0.1358	No
155	UGCGL1	1432318_at 1448009_at 1455839_at	21102	-1.472	-0.1226	No
156	STK35	1431107_at 1439802_at	21131	-1.504	-0.1079	No
157	SOAT1	1417695_a_at 1417696_at 1417697_at 1426818_at 1448068_at	21135	-1.506	-0.0920	No
158	SLCO3A1	1418030_at 1434537_at 1448918_at	21220	-1.614	-0.0787	No
159	ZBTB4	1429722_at 1460488_at	21239	-1.645	-0.0621	No
160	E2F7	1437187_at	21302	-1.725	-0.0466	No
161	TMPO	1421237_at 1426020_at 1426349_s_at 1428976_at 1452036_a_at	21466	-2.017	-0.0327	No
162	ID3	1416630_at	21558	-2.218	-0.0133	No
163	DCK	1428838_a_at 1439012_a_at 1449176_a_at	21735	-2.877	0.0091	No