Details for gene set V$LBP1

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$LBP1_Q6
Enrichment Score (ES)	-0.486668
Normalized Enrichment Score (NES)	-1.5669081
Nominal p-value	0.0021834061
FDR q-value	0.18510494
FWER p-Value	0.617

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PRICKLE1	1441663_at 1442172_at 1442400_at 1444759_at 1452249_at 1457637_at	202	2.807	0.0214	No
2	PPM1A	1415678_at 1417221_at 1425537_at 1429500_at 1429501_s_at 1443903_at 1451943_a_at 1453171_s_at	397	2.052	0.0349	No
3	SUPT16H	1419741_at 1449578_at 1456449_at	449	1.937	0.0538	No
4	SYT6	1420188_at 1426106_a_at 1449766_at 1449767_x_at	473	1.879	0.0732	No
5	FGR	1419526_at 1442804_at	578	1.670	0.0867	No
6	SYTL2	1421594_a_at 1456593_at	809	1.326	0.0906	No
7	SYTL1	1450240_a_at	1093	1.068	0.0893	No
8	ABCB9	1416263_at 1416264_at 1430394_a_at 1443636_at	1231	0.976	0.0937	No
9	RUNX3	1421467_at 1440275_at	1440	0.868	0.0936	No
10	RAPSN	1449331_a_at	1578	0.802	0.0961	No
11	LMO4	1420981_a_at 1439651_at	1803	0.702	0.0935	No
12	POLL	1449352_at	1842	0.691	0.0993	No
13	VAMP3	1421102_a_at 1433693_x_at 1433916_at 1437708_x_at 1456245_x_at 1457391_at	1914	0.664	0.1033	No
14	KRTCAP2	1417058_a_at 1417059_at	2305	0.552	0.0914	No
15	TMOD4	1449969_at	2350	0.541	0.0953	No
16	LOH11CR2A	1426221_at 1426222_s_at	2384	0.534	0.0996	No
17	SSX2IP	1417514_at 1420185_at 1448743_at 1449764_x_at	2529	0.503	0.0985	No
18	USP54	1428731_at	2737	0.463	0.0941	No
19	CAMK2G	1423941_at 1423942_a_at	2789	0.454	0.0967	No
20	PCF11	1427159_at 1427160_at 1428724_at 1456489_at	2876	0.438	0.0975	No
21	SLC18A3	1422203_at	2966	0.425	0.0981	No
22	DPP3	1431594_at 1448215_a_at	3340	0.370	0.0850	No
23	ELP4	1416987_at 1447195_at 1448535_at	3494	0.352	0.0818	No
24	MAN1C1	1436193_at	3579	0.343	0.0817	No
25	IGFBP6	1417933_at	3906	0.317	0.0702	No
26	RXRG	1418782_at	4125	0.299	0.0635	No
27	PHLDB1	1424467_at 1424468_s_at	4274	0.291	0.0599	No
28	CRB1	1421451_at 1441330_at	4417	0.281	0.0564	No
29	FHL3	1420779_at	4524	0.274	0.0545	No
30	KIF1B	1423994_at 1423995_at 1425270_at 1451200_at 1451642_at 1451762_a_at 1455182_at 1458426_at	4582	0.272	0.0549	No
31	EPHB2	1425015_at 1425016_at 1442471_at 1445417_at 1454022_at	4729	0.265	0.0511	No
32	SLITRK5	1429718_at	5152	0.246	0.0344	No
33	BCL7A	1428207_at 1428208_at 1451855_at 1459416_at	5465	0.232	0.0226	No
34	PITX3	1449917_at	5520	0.230	0.0227	No
35	TUBA3	1438611_at	5779	0.221	0.0132	No
36	HMGN2	1433507_a_at	5868	0.217	0.0116	No
37	CABP1	1421255_a_at	5906	0.215	0.0122	No
38	BARX2	1421761_a_at	5961	0.213	0.0121	No
39	PTGFRN	1421319_at 1434891_at	6121	0.208	0.0070	No
40	INA	1418178_at 1448991_a_at 1448992_at	6143	0.207	0.0083	No
41	RGS8	1453060_at	6455	0.197	-0.0038	No
42	AICDA	1420577_at	6540	0.193	-0.0055	No
43	LOXL4	1421153_at 1450134_at	6551	0.193	-0.0039	No
44	DCLRE1A	1417904_at 1432097_a_at 1442329_at	6585	0.192	-0.0033	No
45	NBEA	1452251_at	6671	0.189	-0.0052	No
46	SPAG6	1417528_at	6717	0.188	-0.0052	No
47	VPS45A	1418143_at	6782	0.185	-0.0061	No
48	DAAM1	1431035_at 1455244_at 1458662_at	6936	0.180	-0.0111	No
49	RAB5B	1422119_at 1437446_at	7029	0.178	-0.0134	No
50	EFNA1	1416895_at 1448510_at	7198	0.173	-0.0192	No
51	MYO7A	1421385_a_at	7393	0.167	-0.0263	No
52	MYCBP	1421165_at 1427938_at 1427939_s_at 1427940_s_at 1452608_at	7430	0.166	-0.0262	No
53	ACTA1	1427735_a_at	7667	0.158	-0.0353	No
54	NHLH2	1436888_at	7922	0.151	-0.0453	No
55	RIN1	1424507_at 1437460_x_at	7935	0.151	-0.0442	No
56	SLC22A17	1448209_a_at	8342	0.140	-0.0613	No
57	SCN3B	1426328_a_at 1435767_at	8455	0.138	-0.0649	No
58	HPCA	1425833_a_at 1450930_at	8632	0.134	-0.0716	No
59	MYBPH	1419487_at	8708	0.131	-0.0736	No
60	TAS1R1	1420432_at	9141	0.121	-0.0921	No
61	ANXA8	1417732_at 1425789_s_at	9201	0.119	-0.0935	No
62	NXPH4	1429753_at	9211	0.119	-0.0926	No
63	HMGA2	1422851_at 1443394_at 1446196_at 1450780_s_at 1450781_at 1458241_at	9590	0.110	-0.1088	No
64	RGR	1422832_at	9806	0.104	-0.1175	No
65	WNT10B	1426091_a_at	9858	0.103	-0.1187	No
66	USF1	1426164_a_at 1448805_at 1459758_at	9974	0.100	-0.1229	No
67	LRRTM3	1434759_at 1434760_at 1434761_at 1440112_at 1444477_at	10151	0.096	-0.1299	No
68	FNDC5	1435115_at 1453135_at	10591	0.086	-0.1491	No
69	B3GALT2	1423084_at 1437433_at 1437644_at	10690	0.084	-0.1527	No
70	GPR37L1	1424146_at	10770	0.082	-0.1555	No
71	BNIP3	1422470_at	11206	0.072	-0.1746	No
72	LDB3	1416752_at 1433783_at 1451999_at	11404	0.068	-0.1829	No
73	AQP5	1418818_at	11427	0.067	-0.1832	No
74	SOX5	1423500_a_at 1432189_a_at 1432190_at 1440827_x_at 1446461_at 1452511_at 1459261_at	11524	0.065	-0.1869	No
75	TNNT2	1418726_a_at 1424967_x_at 1440424_at	11771	0.058	-0.1976	No
76	F11R	1424595_at 1436374_x_at	12034	0.051	-0.2090	No
77	LRFN5	1441502_at 1454687_at	12486	0.041	-0.2293	No
78	KCNIP2	1421783_a_at 1425870_a_at	12725	0.036	-0.2398	No
79	KCNA2	1422197_at	12806	0.034	-0.2431	No
80	PCDH9	1439322_at 1442659_at 1444215_at 1444724_at 1445052_at 1445061_at 1457973_at	12998	0.029	-0.2516	No
81	GRIK3	1427709_at	13346	0.019	-0.2673	No
82	PSD	1435780_at	13449	0.017	-0.2718	No
83	HFE2	1429223_a_at 1454137_s_at	13621	0.012	-0.2795	No
84	PKD2L1	1457105_at	13710	0.010	-0.2835	No
85	TMEM25	1436644_x_at 1452962_at	13817	0.007	-0.2883	No
86	IBRDC3	1432478_a_at 1435226_at	13830	0.006	-0.2887	No
87	DDIT4	1428306_at	13846	0.006	-0.2894	No
88	SGCG	1421254_a_at 1437523_s_at	14056	0.000	-0.2990	No
89	TNRC4	1452851_at	14082	-0.000	-0.3001	No
90	RNF121	1426503_a_at 1426504_a_at	14430	-0.011	-0.3159	No
91	TRIM46	1460568_at	14578	-0.016	-0.3225	No
92	SVIL	1427662_at 1460694_s_at 1460735_at	14581	-0.016	-0.3224	No
93	STXBP6	1425749_at 1435396_at 1443580_at	14634	-0.018	-0.3246	No
94	PICALM	1441328_at 1443218_at 1446968_at 1451316_a_at 1455773_at	14864	-0.025	-0.3348	No
95	CHAT	1440070_at	14923	-0.027	-0.3372	No
96	LEPREL2	1449531_at	15068	-0.032	-0.3435	No
97	NTF3	1434802_s_at 1450803_at	15236	-0.038	-0.3507	No
98	PACSIN3	1416995_at 1431534_at 1437834_s_at 1456191_x_at	15417	-0.045	-0.3585	No
99	BCL9L	1419180_at 1438806_at 1443700_at 1444855_at	15577	-0.051	-0.3652	No
100	MYF5	1420757_at	15613	-0.052	-0.3663	No
101	GJA12	1435214_at 1450483_at 1455989_at	15786	-0.060	-0.3735	No
102	ARID1A	1447104_at	15818	-0.062	-0.3743	No
103	P2RX4	1425525_a_at 1446429_at 1452527_a_at	15843	-0.063	-0.3747	No
104	ACTN3	1418677_at	15976	-0.069	-0.3800	No
105	GRK5	1446361_at 1446998_at 1449514_at	16057	-0.073	-0.3828	No
106	GNB3	1449159_at	16273	-0.084	-0.3918	No
107	KCNN3	1421632_at 1459308_at	16505	-0.099	-0.4013	No
108	TNNT3	1450118_a_at	16625	-0.107	-0.4056	No
109	TBX3	1437479_x_at 1439567_at 1444594_at 1445757_at 1448029_at	16753	-0.116	-0.4102	No
110	XPR1	1426053_a_at 1426992_at 1426993_at 1437958_at 1444168_at 1444267_at 1450130_at 1452271_at	16817	-0.120	-0.4118	No
111	TRIM8	1418577_at 1427593_at 1438679_at 1460237_at	16890	-0.125	-0.4137	No
112	MCAM	1416357_a_at	16997	-0.134	-0.4171	No
113	BSCL2	1420632_a_at 1437345_a_at	17173	-0.149	-0.4235	No
114	NEURL	1422251_at 1451872_a_at 1453527_a_at 1456854_at 1458561_at 1460343_at	17191	-0.151	-0.4226	No
115	LZTS2	1426409_at	17520	-0.182	-0.4357	No
116	JMJD1C	1426900_at 1439998_at 1441592_at 1448049_at 1458521_at	17667	-0.198	-0.4402	No
117	SCFD1	1428006_at 1428335_a_at	18150	-0.261	-0.4595	No
118	CHD4	1436343_at 1438476_a_at 1451295_a_at	18186	-0.264	-0.4582	No
119	TPCN1	1434930_at 1451771_at 1451772_at	18206	-0.267	-0.4562	No
120	ZNF385	1418865_at	18538	-0.311	-0.4680	No
121	ZMYND17	1432001_at	18547	-0.313	-0.4649	No
122	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	18692	-0.335	-0.4679	No
123	MBNL2	1433754_at 1436858_at 1446475_at 1455827_at 1457237_at 1457477_at	18809	-0.356	-0.4693	No
124	POLD4	1427885_at	18935	-0.381	-0.4709	No
125	TRPC4	1423579_a_at 1446366_at 1451033_a_at	18940	-0.383	-0.4669	No
126	TNNI2	1416889_at 1438608_at 1438609_x_at	19371	-0.478	-0.4814	Yes
127	RELA	1419536_a_at	19403	-0.485	-0.4776	Yes
128	TRIT1	1424489_a_at 1460108_at	19432	-0.492	-0.4735	Yes
129	MEF2D	1421388_at 1434487_at 1436642_x_at 1437300_at 1458901_at	19516	-0.517	-0.4716	Yes
130	SH3BGRL3	1416528_at	19649	-0.550	-0.4717	Yes
131	RSN	1425060_s_at 1431098_at 1439800_at 1444750_at 1450351_a_at 1452929_at	19684	-0.559	-0.4671	Yes
132	ZRANB1	1415712_at 1427200_at 1436228_at	19689	-0.562	-0.4612	Yes
133	NHLRC2	1429145_at 1433929_at 1444863_at 1453048_at 1457312_at	19693	-0.563	-0.4552	Yes
134	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	19798	-0.593	-0.4534	Yes
135	GFI1	1417679_at	19821	-0.601	-0.4479	Yes
136	EIF4G2	1415863_at 1452758_s_at	19916	-0.628	-0.4453	Yes
137	YTHDF2	1451317_at 1460357_at	20017	-0.665	-0.4427	Yes
138	BTBD11	1428377_at 1459838_s_at 1459839_x_at	20075	-0.688	-0.4378	Yes
139	DOCK9	1445232_at 1446803_at 1446833_at 1446927_at	20128	-0.707	-0.4324	Yes
140	ART1	1422375_a_at 1451372_a_at	20396	-0.823	-0.4357	Yes
141	DACT1	1417937_at	20542	-0.888	-0.4326	Yes
142	RASGEF1A	1429316_at 1435218_at	20759	-1.037	-0.4312	Yes
143	STIM1	1436945_x_at 1448320_at 1458460_at	21132	-1.396	-0.4330	Yes
144	GATA3	1448886_at	21135	-1.401	-0.4178	Yes
145	ATF7IP	1446323_at 1449192_at 1454973_at 1459096_at	21411	-1.823	-0.4105	Yes
146	CACNB2	1441521_at 1444693_at 1446632_at 1452476_at 1456401_at	21490	-2.012	-0.3921	Yes
147	RORC	1425792_a_at 1425793_a_at	21494	-2.024	-0.3701	Yes
148	PPP3CB	1427468_at 1428473_at 1428474_at 1433835_at 1446149_at 1459378_at	21553	-2.158	-0.3492	Yes
149	CDKN1B	1419497_at 1434045_at	21588	-2.239	-0.3263	Yes
150	SPATA6	1418650_at 1418651_at 1438023_at 1445355_at	21729	-2.818	-0.3019	Yes
151	HIVEP3	1421150_at 1429134_at 1439660_at 1450132_at 1458802_at	21730	-2.819	-0.2711	Yes
152	RAI17	1435740_at 1441823_at 1444505_at 1455984_at 1456816_at 1459305_at	21739	-2.850	-0.2403	Yes
153	BAZ2A	1427209_at 1427210_at 1438192_s_at	21812	-3.237	-0.2082	Yes
154	CCND2	1416122_at 1416123_at 1416124_at 1430127_a_at 1434745_at 1448229_s_at 1455956_x_at	21828	-3.314	-0.1727	Yes
155	VAMP1	1421862_a_at 1421863_at	21835	-3.343	-0.1364	Yes
156	CDKN2C	1416868_at 1439164_at	21847	-3.418	-0.0996	Yes
157	EGR2	1427682_a_at 1427683_at	21904	-4.293	-0.0552	Yes
158	S100A8	1419394_s_at	21925	-5.183	0.0005	Yes