Details for gene set V$E2F_Q4

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	SCID
GeneSet	V$E2F_Q4_01
Enrichment Score (ES)	0.45222628
Normalized Enrichment Score (NES)	1.4773575
Nominal p-value	0.0020242915
FDR q-value	0.13979363
FWER p-Value	0.919

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CDCA7	1428069_at 1445681_at	43	4.243	0.0350	Yes
2	HNRPD	1425142_a_at 1446083_at	59	3.935	0.0687	Yes
3	BMP7	1418910_at 1432410_a_at	68	3.772	0.1012	Yes
4	HNRPA1	1423531_a_at 1430020_x_at 1436549_a_at 1442758_at 1446038_at 1455305_x_at 1455740_at	92	3.541	0.1310	Yes
5	LUC7L2	1423251_at 1427087_at 1436165_at 1436766_at 1436767_at 1437761_at 1458423_at	124	3.275	0.1581	Yes
6	POLA2	1425794_at 1448369_at 1456713_at	144	3.131	0.1846	Yes
7	DPYSL2	1433770_at 1450502_at 1458188_at 1458632_at	189	2.899	0.2078	Yes
8	MCM6	1416251_at 1438852_x_at 1447756_x_at	280	2.372	0.2244	Yes
9	HTF9C	1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at	310	2.282	0.2430	Yes
10	HOXA9	1421579_at 1455626_at	351	2.163	0.2600	Yes
11	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	376	2.102	0.2772	Yes
12	ATP5G2	1415980_at 1456128_at	502	1.824	0.2874	Yes
13	CDC6	1417019_a_at	622	1.567	0.2956	Yes
14	UNG	1425753_a_at	734	1.410	0.3028	Yes
15	WEE1	1416773_at 1416774_at	753	1.388	0.3141	Yes
16	GMNN	1417506_at	766	1.376	0.3255	Yes
17	ATAD2	1436174_at 1443146_at 1443229_at	798	1.334	0.3357	Yes
18	RAD51	1418281_at	812	1.324	0.3467	Yes
19	TIAM1	1418057_at 1444373_at 1453887_a_at	931	1.207	0.3518	Yes
20	TOPBP1	1452241_at 1458480_at	1029	1.121	0.3571	Yes
21	MYC	1424942_a_at	1043	1.111	0.3662	Yes
22	POLE4	1423371_at 1423372_at 1432286_at 1444739_at	1092	1.069	0.3733	Yes
23	MELK	1416558_at	1134	1.036	0.3805	Yes
24	SEMA5A	1422167_at 1434776_at 1437422_at 1446772_at 1446865_at 1446910_at 1459109_at	1164	1.017	0.3880	Yes
25	POLE2	1427094_at 1431440_at	1190	1.000	0.3956	Yes
26	IMPDH2	1415851_a_at 1415852_at	1309	0.929	0.3983	Yes
27	CDC45L	1416575_at 1457838_at	1397	0.889	0.4020	Yes
28	RANBP1	1422547_at	1425	0.874	0.4084	Yes
29	PPRC1	1426381_at	1520	0.834	0.4113	Yes
30	MXD3	1422970_at 1438847_at 1448878_at	1622	0.783	0.4135	Yes
31	RCOR2	1417302_at	1627	0.779	0.4201	Yes
32	ORC1L	1422663_at 1443172_at	1723	0.732	0.4221	Yes
33	HMGA1	1416184_s_at	1840	0.692	0.4229	Yes
34	UXT	1418986_a_at	1888	0.671	0.4266	Yes
35	MCM2	1434079_s_at 1448777_at	1953	0.651	0.4293	Yes
36	JPH1	1421520_at 1438428_at	1986	0.642	0.4334	Yes
37	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	2004	0.634	0.4382	Yes
38	YBX2	1420762_a_at	2026	0.628	0.4427	Yes
39	E2F7	1437187_at	2153	0.591	0.4420	Yes
40	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	2279	0.560	0.4412	Yes
41	SUV39H1	1427382_a_at 1432227_at 1432236_a_at	2351	0.541	0.4426	Yes
42	RPS19	1449243_a_at 1460442_at	2419	0.526	0.4441	Yes
43	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	2458	0.516	0.4469	Yes
44	PCSK4	1425824_a_at	2487	0.511	0.4501	Yes
45	SLBP	1430058_at 1460168_at	2536	0.501	0.4522	Yes
46	PVRL1	1438111_at 1438421_at 1440131_at 1446488_at 1450819_at	2967	0.425	0.4362	No
47	DNAJC11	1433880_at 1433881_at 1439763_at 1446686_at 1447055_at	3439	0.358	0.4177	No
48	PIK3R3	1445097_at 1447068_at 1456482_at	3939	0.314	0.3975	No
49	ABCF2	1423863_at	4139	0.298	0.3909	No
50	EPHB1	1455188_at	4191	0.295	0.3912	No
51	ZIM2	1432297_at	4350	0.285	0.3864	No
52	ANP32E	1420592_a_at 1447680_at	4400	0.281	0.3866	No
53	PAQR4	1423101_at	4481	0.277	0.3853	No
54	PKMYT1	1418481_at 1438601_at	4550	0.273	0.3846	No
55	EPHB2	1425015_at 1425016_at 1442471_at 1445417_at 1454022_at	4729	0.265	0.3787	No
56	FANCC	1442265_at 1447632_at 1450861_at	4769	0.264	0.3792	No
57	STMN1	1415849_s_at	4880	0.258	0.3764	No
58	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	5173	0.245	0.3652	No
59	H2AFZ	1441370_at	5496	0.231	0.3524	No
60	ERF	1422114_at 1435561_at	5583	0.228	0.3504	No
61	DNAJC5G	1437814_at	5670	0.225	0.3484	No
62	HMGN2	1433507_a_at	5868	0.217	0.3413	No
63	E2F3	1427462_at 1434564_at	6026	0.211	0.3359	No
64	MCM4	1416214_at 1436708_x_at	6049	0.210	0.3367	No
65	DCLRE1A	1417904_at 1432097_a_at 1442329_at	6585	0.192	0.3138	No
66	NEGR1	1439303_at 1446279_at 1456392_at 1459126_at	6723	0.187	0.3091	No
67	GLRA3	1450239_at	7024	0.178	0.2969	No
68	PCNA	1417947_at	7044	0.177	0.2976	No
69	AP4M1	1418846_at	7271	0.170	0.2887	No
70	E2F1	1417878_at 1431875_a_at 1447840_x_at	7608	0.160	0.2746	No
71	SFMBT1	1422893_at 1422894_at 1443853_x_at	7643	0.159	0.2745	No
72	KCNA6	1421568_at 1441049_at 1456954_at	7776	0.155	0.2698	No
73	MAP3K13	1430137_at 1440749_at 1447699_at	7862	0.153	0.2672	No
74	CASP2	1448165_at	8316	0.141	0.2476	No
75	NDUFA11	1429708_at 1444154_at	8659	0.133	0.2331	No
76	ETV4	1423232_at 1443381_at	8989	0.124	0.2190	No
77	KNTC1	1435575_at	9004	0.124	0.2195	No
78	PPP1R9B	1447247_at 1447486_at	9214	0.119	0.2109	No
79	FANCG	1420960_at	9663	0.108	0.1913	No
80	CTNND2	1422592_at 1438891_at 1443638_at 1445114_at 1447552_s_at 1456116_at	9716	0.107	0.1898	No
81	GPS2	1417796_at	10029	0.099	0.1763	No
82	MAT2A	1423667_at 1433576_at 1438386_x_at 1438630_x_at 1438976_x_at 1439386_x_at 1456702_x_at	10211	0.095	0.1688	No
83	SLC6A4	1417150_at	10397	0.091	0.1611	No
84	DMRT1	1423582_at	10852	0.080	0.1410	No
85	SLC16A2	1418446_at	11134	0.073	0.1287	No
86	RBBP4	1434892_x_at 1442443_at 1454791_a_at 1454875_a_at 1456260_at	11168	0.073	0.1278	No
87	ERG	1425370_a_at 1440244_at	11676	0.061	0.1051	No
88	MAZ	1427099_at	11861	0.056	0.0971	No
89	PHF15	1430081_at 1455345_at	12053	0.051	0.0888	No
90	PEG3	1417355_at 1417356_at 1433924_at 1447731_at 1447732_x_at	12258	0.046	0.0798	No
91	HOXC10	1439798_at	12336	0.045	0.0766	No
92	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	12674	0.037	0.0615	No
93	ARHGAP11A	1438434_at	12759	0.035	0.0579	No
94	UFD1L	1418087_at 1432367_a_at	12812	0.034	0.0558	No
95	PTMA	1423455_at	12819	0.034	0.0559	No
96	ACBD6	1452601_a_at 1453199_at	13205	0.024	0.0384	No
97	ANKHD1	1419867_a_at 1436597_at 1440754_at 1441597_at 1442641_at 1448008_at 1453023_at 1455759_a_at	13446	0.017	0.0275	No
98	USP2	1417168_a_at 1417169_at	13527	0.014	0.0239	No
99	IPO7	1442511_at 1454955_at 1458165_at	13685	0.010	0.0168	No
100	PODN	1435180_at	14260	-0.006	-0.0095	No
101	DDX17	1437773_x_at 1439037_at 1452155_a_at	14403	-0.011	-0.0159	No
102	RNF121	1426503_a_at 1426504_a_at	14430	-0.011	-0.0170	No
103	RFC1	1418342_at 1449050_at 1451920_a_at	14628	-0.018	-0.0259	No
104	SALL1	1450489_at	14688	-0.020	-0.0285	No
105	TNPO2	1425592_at 1425593_at 1437283_at	14901	-0.026	-0.0380	No
106	TMEM15	1424366_at	15201	-0.037	-0.0514	No
107	RBPSUH	1418114_at 1438848_at 1446436_at 1448957_at 1454896_at	15285	-0.040	-0.0548	No
108	KLF5	1430255_at 1451021_a_at 1451739_at	15319	-0.042	-0.0560	No
109	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	15467	-0.047	-0.0623	No
110	FMO4	1425799_at 1444852_at	15487	-0.048	-0.0628	No
111	PRIM1	1418369_at 1444544_at 1449061_a_at	15709	-0.056	-0.0725	No
112	SLC38A1	1415903_at 1454764_s_at	15762	-0.059	-0.0743	No
113	PLK4	1419838_s_at 1426580_at 1452115_a_at	15985	-0.070	-0.0839	No
114	PCDH7	1427592_at 1437442_at 1449249_at 1456214_at	16003	-0.071	-0.0841	No
115	BAI1	1455363_at	16188	-0.079	-0.0918	No
116	CASP8AP2	1449217_at	16429	-0.094	-0.1021	No
117	WHSC1L1	1442085_at 1447931_at 1455668_at 1457630_at 1457793_a_at 1457794_at 1459907_a_at	16449	-0.095	-0.1021	No
118	UCHL1	1448260_at	16737	-0.114	-0.1143	No
119	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	16751	-0.116	-0.1139	No
120	TBX3	1437479_x_at 1439567_at 1444594_at 1445757_at 1448029_at	16753	-0.116	-0.1129	No
121	RPS6KA5	1431050_at 1437625_at 1439004_at 1440343_at	16864	-0.123	-0.1169	No
122	NRP2	1425433_a_at 1426528_at 1435349_at 1452552_at 1456778_at 1459256_at	16937	-0.129	-0.1191	No
123	APRIN	1435242_at 1436161_at 1441553_at	17050	-0.138	-0.1230	No
124	ATE1	1420036_at 1420651_at 1420652_at 1435173_at 1446611_at 1449709_s_at	17123	-0.144	-0.1251	No
125	CBX5	1421932_at 1421933_at 1421934_at 1450416_at 1454636_at 1459845_at	17244	-0.156	-0.1292	No
126	PRKDC	1451576_at	17327	-0.164	-0.1316	No
127	GPRC5B	1424613_at 1451411_at	17333	-0.164	-0.1304	No
128	DAXX	1419026_at	17440	-0.174	-0.1337	No
129	FBXO5	1429499_at	17869	-0.220	-0.1514	No
130	EZH2	1416544_at 1444263_at	17898	-0.223	-0.1508	No
131	SYT11	1429314_at 1429315_at 1429729_at 1436176_at 1449264_at 1455176_a_at	17937	-0.229	-0.1505	No
132	FBXL20	1442464_at 1445575_at 1452826_s_at 1456378_s_at	18027	-0.243	-0.1525	No
133	PIK3R4	1460352_s_at	18173	-0.262	-0.1569	No
134	SFRS12	1427134_at 1427135_at 1427136_s_at 1458056_at	18233	-0.271	-0.1572	No
135	USP52	1426700_a_at	18283	-0.280	-0.1571	No
136	BRMS1L	1452850_s_at 1460443_at	18343	-0.286	-0.1573	No
137	PPM1D	1434142_at 1449092_at 1459069_at	18374	-0.291	-0.1561	No
138	CDC25A	1417131_at 1417132_at 1445995_at	18425	-0.297	-0.1558	No
139	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	18537	-0.311	-0.1582	No
140	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	18697	-0.335	-0.1626	No
141	ADAMTS2	1435990_at 1455720_at 1457058_at	18967	-0.388	-0.1716	No
142	EIF5A	1437859_x_at 1451470_s_at	18999	-0.394	-0.1695	No
143	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	19100	-0.415	-0.1705	No
144	KPNB1	1416925_at 1434357_a_at 1448526_at 1451967_x_at	19279	-0.456	-0.1747	No
145	DDB2	1425706_a_at 1436680_s_at	19308	-0.465	-0.1719	No
146	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	19530	-0.519	-0.1776	No
147	DNMT1	1422946_a_at 1435122_x_at 1445637_at 1447877_x_at	19582	-0.533	-0.1753	No
148	NHLRC2	1429145_at 1433929_at 1444863_at 1453048_at 1457312_at	19693	-0.563	-0.1754	No
149	CTCF	1418330_at 1449042_at	19751	-0.580	-0.1730	No
150	STAG2	1421849_at 1450396_at	20247	-0.758	-0.1891	No
151	NUTF2	1434367_s_at 1447440_at 1449017_at	20332	-0.792	-0.1860	No
152	RAB11B	1423448_at	20399	-0.825	-0.1819	No
153	NCOA6	1423374_at	20631	-0.939	-0.1843	No
154	IPO11	1428096_at 1429717_at	20642	-0.944	-0.1765	No
155	FBXO9	1417480_at 1432211_a_at	20672	-0.969	-0.1694	No
156	HRBL	1425362_at 1437642_at 1441347_at	20857	-1.104	-0.1682	No
157	AP1S2	1437998_at 1447903_x_at 1452657_at 1456252_x_at 1460036_at	20871	-1.116	-0.1591	No
158	PPP1R8	1424554_at 1435821_s_at	21012	-1.255	-0.1546	No
159	DLST	1423710_at 1430161_at 1431011_at 1437775_at	21097	-1.353	-0.1467	No
160	STAG1	1421939_a_at 1421940_at 1431921_a_at 1434189_at 1435731_x_at 1445145_at 1445652_at 1450420_at	21105	-1.362	-0.1351	No
161	GATA3	1448886_at	21135	-1.401	-0.1242	No
162	JMJD1A	1426810_at	21136	-1.403	-0.1120	No
163	AXUD1	1434350_at	21174	-1.449	-0.1011	No
164	DCK	1428838_a_at 1439012_a_at 1449176_a_at	21284	-1.599	-0.0921	No
165	NR3C2	1435991_at 1440306_at 1442533_at	21371	-1.730	-0.0810	No
166	MCM3	1420029_at 1426653_at	21483	-1.983	-0.0688	No
167	ARID4A	1436191_at 1438464_at 1456420_at	21524	-2.082	-0.0525	No
168	OSBPL7	1428893_at 1459966_at	21551	-2.155	-0.0349	No
169	ZCCHC8	1423755_at 1441639_at	21773	-2.986	-0.0190	No
170	ID3	1416630_at	21780	-3.031	0.0072	No