Details for gene set V$AP2_Q6

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	V$AP2_Q6_01
Enrichment Score (ES)	-0.45052856
Normalized Enrichment Score (NES)	-1.4819348
Nominal p-value	0.0020242915
FDR q-value	0.21586452
FWER p-Value	0.92

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MTCH2	1430474_a_at 1430969_at 1437806_x_at 1438842_at 1438843_x_at 1448654_at	150	3.096	0.0220	No
2	PPP2R5A	1423911_at 1440189_at 1444036_at	200	2.819	0.0460	No
3	LHX2	1418317_at	264	2.444	0.0659	No
4	NR2F2	1416158_at 1416159_at 1416160_at 1431237_at 1444229_at	427	1.978	0.0769	No
5	CNP	1418980_a_at 1437341_x_at 1449296_a_at	499	1.827	0.0907	No
6	SPRED1	1423160_at 1423161_s_at 1423162_s_at 1428777_at 1441517_at 1442859_at 1443652_x_at 1445228_at 1452911_at 1460116_s_at	553	1.708	0.1042	No
7	PTK7	1452589_at	613	1.592	0.1163	No
8	UBE2S	1416726_s_at 1430962_at	911	1.217	0.1140	No
9	RGMA	1438241_at	1014	1.132	0.1199	No
10	CDK9	1417269_at 1457240_at	1207	0.989	0.1203	No
11	ARF3	1421789_s_at 1423973_a_at 1434787_at 1437331_a_at 1456007_at	1227	0.977	0.1285	No
12	EYA1	1421727_at 1443117_at 1457424_at	1310	0.929	0.1334	No
13	CRSP7	1452282_at 1458377_at	1671	0.757	0.1239	No
14	RPL36AL	1448697_s_at	1675	0.754	0.1308	No
15	ANP32A	1421918_at 1434555_at 1450407_a_at	1702	0.739	0.1365	No
16	RBM6	1417213_a_at 1440223_at 1452466_a_at 1458912_at	1939	0.655	0.1318	No
17	ITPKA	1424037_at	1955	0.651	0.1372	No
18	UBTF	1453097_a_at 1455490_at 1460304_a_at	1981	0.644	0.1420	No
19	SYMPK	1428673_at	2049	0.621	0.1447	No
20	FGD1	1416865_at 1437369_at 1459278_at	2152	0.591	0.1456	No
21	PLCB3	1448661_at	2392	0.532	0.1395	No
22	ST7	1418967_a_at	2423	0.525	0.1430	No
23	CEECAM1	1435345_at	2696	0.468	0.1349	No
24	CPSF4	1424469_a_at	2849	0.444	0.1321	No
25	GRK6	1437436_s_at 1450480_a_at 1451672_at	2877	0.438	0.1349	No
26	HOXB2	1444204_at 1449397_at	2896	0.434	0.1381	No
27	SLC18A3	1422203_at	2966	0.425	0.1389	No
28	NTF5	1440353_at	3001	0.420	0.1413	No
29	SLC25A28	1424776_a_at	3015	0.417	0.1446	No
30	DBN1	1426024_a_at 1451734_a_at	3239	0.383	0.1379	No
31	IGSF4	1417376_a_at 1417377_at 1417378_at 1431611_a_at	3240	0.383	0.1414	No
32	TFEB	1422566_at	3683	0.334	0.1242	No
33	GPR3	1460275_at	3794	0.325	0.1222	No
34	PLXNC1	1423213_at 1423214_at 1443433_at 1443434_s_at 1450905_at 1450906_at	3804	0.324	0.1248	No
35	EPHB1	1455188_at	4191	0.295	0.1098	No
36	FASTK	1460635_at	4453	0.279	0.1004	No
37	PAQR4	1423101_at	4481	0.277	0.1018	No
38	STMN1	1415849_s_at	4880	0.258	0.0859	No
39	NCOA6IP	1421904_at 1421905_at 1439710_at 1446164_at 1450400_at 1450401_at	4895	0.258	0.0876	No
40	CGREF1	1424528_at 1424529_s_at	5147	0.246	0.0784	No
41	ASCL1	1437086_at 1450164_at	5186	0.244	0.0789	No
42	MGAT4B	1424720_at	5224	0.242	0.0795	No
43	FGF11	1421793_at 1439959_at	5240	0.242	0.0810	No
44	RHBDF1	1424138_at	5384	0.236	0.0767	No
45	CENTD2	1428064_at	5412	0.235	0.0776	No
46	ERF	1422114_at 1435561_at	5583	0.228	0.0719	No
47	CCNG1	1420827_a_at 1450016_at 1450017_at	5691	0.224	0.0691	No
48	FXYD1	1421374_a_at	5848	0.218	0.0640	No
49	CNNM4	1421635_at 1431233_at	5938	0.214	0.0619	No
50	RASIP1	1428016_a_at	6040	0.210	0.0592	No
51	OSR2	1426155_a_at 1430950_at	6279	0.202	0.0501	No
52	SLC17A7	1428986_at	6607	0.191	0.0369	No
53	TRIM28	1415869_a_at 1456308_x_at	6968	0.179	0.0220	No
54	MIB1	1433853_at 1446818_at 1451818_at 1454740_at	7059	0.177	0.0195	No
55	CXXC5	1431469_a_at 1448960_at	7158	0.174	0.0166	No
56	MESDC1	1416397_at 1416398_at	7354	0.168	0.0092	No
57	IL11	1449982_at	7414	0.166	0.0081	No
58	CENTG2	1435432_at 1435433_at 1437394_at 1442632_at 1457978_at 1459053_at 1459389_at	7514	0.163	0.0050	No
59	CAMTA2	1426901_s_at 1452229_at	7679	0.158	-0.0010	No
60	CLDN5	1417839_at	7807	0.154	-0.0054	No
61	EFNB3	1423085_at	7828	0.153	-0.0049	No
62	KCNK3	1425341_at 1425342_a_at 1426058_a_at	8333	0.141	-0.0268	No
63	FMNL1	1445636_at 1450212_at	8693	0.132	-0.0421	No
64	MKNK2	1418300_a_at 1449029_at	8755	0.130	-0.0436	No
65	MYH10	1441057_at 1452740_at	8799	0.129	-0.0444	No
66	GNG8	1457755_at	8861	0.128	-0.0460	No
67	KCNQ4	1435721_at 1442909_at	8914	0.126	-0.0472	No
68	PORCN	1424220_a_at 1438753_at	8940	0.126	-0.0472	No
69	NXPH3	1419710_at	9015	0.124	-0.0495	No
70	COL12A1	1427391_a_at 1445751_at	9152	0.120	-0.0546	No
71	WNT5A	1436791_at 1448818_at 1456976_at	9180	0.120	-0.0547	No
72	RFX1	1422109_at 1436059_at	9364	0.115	-0.0621	No
73	MN1	1454867_at	9813	0.104	-0.0817	No
74	FOXA3	1431900_a_at	10164	0.096	-0.0969	No
75	MAFB	1451715_at 1451716_at	10274	0.093	-0.1010	No
76	HOXA1	1420565_at	10432	0.090	-0.1074	No
77	FKBP14	1433481_at 1458225_at	10563	0.087	-0.1126	No
78	PFKFB3	1416432_at 1419882_at 1456676_a_at	10688	0.084	-0.1175	No
79	SLC6A11	1433989_at 1453871_at	10899	0.079	-0.1264	No
80	THRAP1	1436904_at 1438725_at 1444068_at 1446840_at 1453160_at 1453161_at	11018	0.076	-0.1311	No
81	GP1BB	1422977_at 1456427_at	11031	0.075	-0.1310	No
82	FBXL11	1435329_at 1443336_at 1444358_at 1455942_at 1458449_at	11431	0.067	-0.1487	No
83	POFUT1	1443881_at 1450137_at 1456323_at	11580	0.063	-0.1549	No
84	KCNH8	1440980_at 1459015_at	11611	0.062	-0.1557	No
85	PGF	1418471_at	11698	0.060	-0.1591	No
86	HOXB9	1452317_at	11895	0.055	-0.1676	No
87	DMPK	1422989_a_at 1434944_at	11975	0.053	-0.1707	No
88	PHF15	1430081_at 1455345_at	12053	0.051	-0.1738	No
89	PPM1E	1434990_at 1445741_at	12076	0.050	-0.1743	No
90	KCNJ12	1422871_at	12082	0.050	-0.1741	No
91	APLP1	1416134_at 1435857_s_at	12165	0.048	-0.1774	No
92	SOX2	1416967_at	12260	0.046	-0.1813	No
93	LRFN5	1441502_at 1454687_at	12486	0.041	-0.1913	No
94	PTMA	1423455_at	12819	0.034	-0.2062	No
95	KLF13	1432543_a_at 1456030_at	12893	0.032	-0.2093	No
96	NR2E1	1434921_at 1457289_at	13079	0.027	-0.2175	No
97	ADAMTS5	1422561_at 1450658_at 1456404_at	13227	0.023	-0.2241	No
98	HDLBP	1415987_at 1415988_at 1419806_at 1419869_s_at 1443546_at 1449615_s_at	13381	0.018	-0.2309	No
99	CPEB3	1437765_at 1445868_at 1455372_at 1456048_at	13460	0.016	-0.2344	No
100	ATP5H	1423676_at 1435112_a_at	13608	0.012	-0.2410	No
101	HEY1	1415999_at	13675	0.010	-0.2439	No
102	TMEM25	1436644_x_at 1452962_at	13817	0.007	-0.2504	No
103	ADRB1	1423420_at	13823	0.006	-0.2505	No
104	BTBD14B	1420968_at 1420969_at 1433139_at 1433140_a_at 1443382_s_at 1458200_at	13875	0.005	-0.2528	No
105	KCNAB3	1421790_a_at 1423950_at	14021	0.001	-0.2595	No
106	ACVR2B	1419140_at 1439856_at	14340	-0.008	-0.2740	No
107	NCOA2	1435233_at 1435234_at 1446827_at 1450458_at	14408	-0.011	-0.2770	No
108	POU5F1	1417945_at	14412	-0.011	-0.2771	No
109	HPN	1420712_a_at	14529	-0.014	-0.2822	No
110	KCNH5	1441742_at	14572	-0.016	-0.2840	No
111	SALL1	1450489_at	14688	-0.020	-0.2891	No
112	ACCN1	1417994_a_at	14718	-0.021	-0.2903	No
113	PDGFB	1450413_at 1450414_at	14848	-0.025	-0.2960	No
114	PICALM	1441328_at 1443218_at 1446968_at 1451316_a_at 1455773_at	14864	-0.025	-0.2964	No
115	DLGAP4	1426465_at 1455548_at	14880	-0.025	-0.2969	No
116	CHAT	1440070_at	14923	-0.027	-0.2986	No
117	FGF9	1420795_at 1438718_at 1445258_at	14991	-0.030	-0.3014	No
118	SLC7A10	1421093_at	15004	-0.030	-0.3016	No
119	SFRS16	1428961_a_at	15611	-0.052	-0.3290	No
120	SMARCD1	1448913_at	15615	-0.052	-0.3287	No
121	ARID1A	1447104_at	15818	-0.062	-0.3374	No
122	OAZ2	1426763_at 1426764_at 1442541_at 1442735_at	16266	-0.083	-0.3571	No
123	SIPA1	1416206_at	16310	-0.086	-0.3583	No
124	RAB35	1433922_at	16975	-0.132	-0.3876	No
125	CYB561D1	1431021_at 1434226_at 1459837_at	17129	-0.145	-0.3933	No
126	SYT7	1423012_at 1441927_at 1446641_at 1460081_at	17141	-0.146	-0.3924	No
127	PABPC1	1418883_a_at 1419500_at 1453840_at	17229	-0.154	-0.3950	No
128	C1ORF24	1422567_at 1454942_at	17269	-0.158	-0.3953	No
129	NFYC	1448963_at	17288	-0.160	-0.3947	No
130	SH3BP4	1416305_at 1455250_at	17445	-0.175	-0.4002	No
131	PRDM16	1429308_at 1429309_at 1440745_at 1440870_at 1443251_at	17469	-0.178	-0.3996	No
132	LDB1	1452024_a_at	17694	-0.200	-0.4080	No
133	MGAT2	1426350_at 1452037_at	18023	-0.242	-0.4208	No
134	BAHD1	1433703_s_at	18119	-0.256	-0.4228	No
135	CHD4	1436343_at 1438476_a_at 1451295_a_at	18186	-0.264	-0.4234	No
136	PSCD2	1450103_a_at	18309	-0.282	-0.4264	No
137	SLC37A4	1417042_at	18340	-0.286	-0.4251	No
138	TLK2	1416944_a_at 1431827_a_at 1454018_at 1457357_at	18546	-0.313	-0.4316	No
139	GLTP	1419027_s_at	18559	-0.314	-0.4292	No
140	NRF1	1420978_at 1424787_a_at 1434627_at 1439545_at 1445914_at	18594	-0.321	-0.4278	No
141	RNF40	1438191_a_at	18761	-0.348	-0.4322	No
142	ZNRF2	1431154_at 1434016_at 1434017_at 1444735_at 1455290_at 1455291_s_at	18954	-0.386	-0.4374	No
143	PCTK1	1415956_a_at 1438314_at 1443296_at 1460169_a_at	19038	-0.403	-0.4375	No
144	CIRBP	1416332_at	19068	-0.409	-0.4350	No
145	DTNB	1437651_a_at 1445329_at 1446012_at	19096	-0.415	-0.4324	No
146	SLC12A4	1417446_at	19237	-0.447	-0.4346	No
147	DNMT3A	1423063_at 1423064_at 1423065_at 1423066_at 1442309_at 1460324_at	19584	-0.533	-0.4456	Yes
148	RAD21	1416161_at 1416162_at 1455938_x_at	19630	-0.545	-0.4425	Yes
149	CIC	1415746_at	19671	-0.554	-0.4392	Yes
150	CTCF	1418330_at 1449042_at	19751	-0.580	-0.4374	Yes
151	PIAS1	1422581_at 1446448_at 1455486_at 1455611_at	19898	-0.621	-0.4383	Yes
152	EIF4G2	1415863_at 1452758_s_at	19916	-0.628	-0.4333	Yes
153	CELSR2	1422073_a_at 1435336_at	20066	-0.684	-0.4337	Yes
154	VEGF	1420909_at 1451959_a_at	20130	-0.707	-0.4300	Yes
155	BCOR	1428773_s_at 1429438_at 1452910_at	20232	-0.749	-0.4277	Yes
156	FBS1	1425276_at 1451645_at	20248	-0.760	-0.4213	Yes
157	PHF1	1416542_at	20307	-0.784	-0.4167	Yes
158	TERF2	1421147_at 1455651_at 1459650_at	20487	-0.863	-0.4168	Yes
159	KIF3C	1434947_at 1448946_at	20588	-0.913	-0.4129	Yes
160	RDH10	1426968_a_at 1460632_at	20593	-0.917	-0.4046	Yes
161	NCOA6	1423374_at	20631	-0.939	-0.3975	Yes
162	KCNH2	1449544_a_at	20641	-0.943	-0.3891	Yes
163	TRIM39	1418851_at	20684	-0.980	-0.3819	Yes
164	ANGPTL2	1421002_at 1431848_at	20782	-1.051	-0.3766	Yes
165	SMAD7	1423389_at 1440952_at 1443771_x_at	20786	-1.054	-0.3669	Yes
166	GPR12	1449472_at 1457702_at	20962	-1.211	-0.3636	Yes
167	PLAGL2	1417517_at 1417518_at 1417519_at 1442235_at	21162	-1.435	-0.3594	Yes
168	PIP5K2B	1427438_at 1435068_at 1441164_at 1444128_at	21235	-1.534	-0.3484	Yes
169	TACC2	1425745_a_at 1447891_at	21246	-1.553	-0.3344	Yes
170	MAP3K7IP2	1423462_at 1451003_at	21272	-1.580	-0.3208	Yes
171	JMJD1B	1428320_at 1438508_at 1458417_at	21391	-1.777	-0.3097	Yes
172	CRY1	1433733_a_at	21412	-1.823	-0.2936	Yes
173	RAP1GDS1	1425266_a_at 1459768_x_at	21428	-1.858	-0.2769	Yes
174	FNBP1	1426983_at 1451806_at 1453746_at 1458639_at 1460047_at	21432	-1.864	-0.2597	Yes
175	MGEA5	1422900_at 1422901_at 1422902_s_at 1433654_at 1439081_at	21468	-1.956	-0.2431	Yes
176	RASGRP2	1417804_at 1438932_at 1438933_x_at 1442264_at 1449613_at	21485	-1.985	-0.2253	Yes
177	BCAT2	1425764_a_at	21495	-2.027	-0.2068	Yes
178	B4GALT1	1418014_a_at 1458616_at 1458773_at	21533	-2.101	-0.1889	Yes
179	DGCR8	1422981_at 1435439_at 1446169_at 1455311_at	21639	-2.415	-0.1712	Yes
180	SPATA6	1418650_at 1418651_at 1438023_at 1445355_at	21729	-2.818	-0.1490	Yes
181	NEO1	1423513_at 1434931_at 1440789_at 1444295_at 1447693_s_at 1447694_x_at 1459485_at	21731	-2.823	-0.1227	Yes
182	BCL6	1421818_at 1450381_a_at	21747	-2.870	-0.0966	Yes
183	ADIPOR1	1424312_at 1439017_x_at 1451311_a_at	21803	-3.171	-0.0696	Yes
184	MLL5	1427236_a_at 1432601_at 1434704_at 1439107_a_at 1439108_at	21876	-3.671	-0.0387	Yes
185	EGR3	1421486_at 1436329_at	21908	-4.438	0.0013	Yes