Details for gene set LI_FETAL_VS_WT_KIDNEY

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	SCID
GeneSet	LI_FETAL_VS_WT_KIDNEY_DN
Enrichment Score (ES)	0.5981735
Normalized Enrichment Score (NES)	1.9119593
Nominal p-value	0.0
FDR q-value	0.0019508186
FWER p-Value	0.028

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	BUB3	1416815_s_at 1448058_s_at 1448473_at 1459104_at 1459918_at	24	4.996	0.0409	Yes
2	ASNS	1433966_x_at 1451095_at	36	4.389	0.0774	Yes
3	PRIM2A	1418035_a_at 1418036_at 1445474_at	81	3.652	0.1061	Yes
4	PBX3	1421193_a_at 1440154_at 1442270_at 1447640_s_at	190	2.893	0.1254	Yes
5	FEN1	1421731_a_at 1436454_x_at	196	2.841	0.1491	Yes
6	PTTG1	1419620_at 1424105_a_at 1438390_s_at	214	2.722	0.1712	Yes
7	NOLC1	1428869_at 1428870_at 1450087_a_at	258	2.467	0.1900	Yes
8	XPOT	1428772_at 1428949_at 1441681_at 1441682_s_at	269	2.417	0.2099	Yes
9	MCM6	1416251_at 1438852_x_at 1447756_x_at	280	2.372	0.2294	Yes
10	HOXA9	1421579_at 1455626_at	351	2.163	0.2444	Yes
11	TIA1	1416812_at 1416813_at 1416814_at 1423763_x_at 1431708_a_at 1437934_at 1441834_x_at 1453803_at 1454778_x_at	371	2.115	0.2613	Yes
12	KIF2C	1432392_at 1437611_x_at 1454221_a_at	386	2.084	0.2782	Yes
13	CKS1B	1416698_a_at 1439514_at 1448441_at 1456268_at	453	1.925	0.2914	Yes
14	TRIP13	1429294_at 1429295_s_at 1446760_at	551	1.715	0.3014	Yes
15	FADS2	1419031_at 1443838_x_at 1449325_at	569	1.682	0.3147	Yes
16	TOP2A	1427724_at 1442454_at 1454694_a_at	589	1.644	0.3277	Yes
17	KIFC1	1449877_s_at 1456136_at	604	1.612	0.3406	Yes
18	GPC1	1417389_at	616	1.581	0.3534	Yes
19	SPAG5	1427498_a_at 1433892_at 1433893_s_at	699	1.457	0.3619	Yes
20	ESPL1	1433862_at	718	1.428	0.3731	Yes
21	UNG	1425753_a_at	734	1.410	0.3843	Yes
22	SLC16A1	1415802_at 1446274_at	839	1.286	0.3903	Yes
23	LMNB1	1423520_at 1423521_at	844	1.278	0.4009	Yes
24	NCBP2	1423045_at 1423046_s_at 1450847_at	860	1.257	0.4108	Yes
25	FADS1	1423680_at 1440444_at	873	1.243	0.4207	Yes
26	POLE3	1421015_s_at	875	1.242	0.4311	Yes
27	MTHFD2	1419253_at 1419254_at	884	1.235	0.4411	Yes
28	PARP1	1422502_at 1422503_s_at 1435368_a_at 1443573_at	934	1.205	0.4490	Yes
29	CCT3	1416024_x_at 1426067_x_at 1439679_at 1448178_a_at 1449645_s_at 1451915_at 1459987_s_at	1016	1.131	0.4548	Yes
30	AURKB	1424128_x_at 1451246_s_at	1022	1.126	0.4640	Yes
31	TOPBP1	1452241_at 1458480_at	1029	1.121	0.4732	Yes
32	RFC5	1452917_at	1102	1.062	0.4788	Yes
33	CDC20	1416664_at 1439377_x_at 1439394_x_at	1125	1.041	0.4866	Yes
34	MELK	1416558_at	1134	1.036	0.4949	Yes
35	RNASEH2A	1452725_a_at	1174	1.008	0.5016	Yes
36	CKS2	1417457_at 1417458_s_at	1184	1.004	0.5097	Yes
37	TIMELESS	1417586_at 1417587_at	1214	0.985	0.5166	Yes
38	EYA1	1421727_at 1443117_at 1457424_at	1310	0.929	0.5201	Yes
39	SNRPA1	1417351_a_at 1417352_s_at 1417353_x_at	1348	0.913	0.5261	Yes
40	CCNB2	1450920_at	1372	0.898	0.5326	Yes
41	UCK2	1417137_at 1426909_at 1439740_s_at 1439741_x_at 1441858_at 1448604_at 1457980_x_at	1493	0.843	0.5342	Yes
42	NUP205	1430343_at 1454743_at	1539	0.821	0.5390	Yes
43	KIF23	1450827_at 1453748_a_at 1455990_at	1587	0.798	0.5436	Yes
44	TARBP2	1423616_at 1438952_x_at	1612	0.787	0.5491	Yes
45	YARS	1460638_at	1621	0.785	0.5553	Yes
46	GARS	1423784_at	1695	0.741	0.5582	Yes
47	ILF2	1417948_s_at 1417949_at	1697	0.740	0.5644	Yes
48	CDC25C	1422252_a_at	1745	0.723	0.5683	Yes
49	BUB1B	1416961_at 1447362_at 1447363_s_at	1775	0.711	0.5730	Yes
50	MARS	1455951_at	1786	0.709	0.5785	Yes
51	DNAJC9	1426473_at	1805	0.702	0.5836	Yes
52	NME1	1424110_a_at 1435277_x_at	1875	0.678	0.5861	Yes
53	TPX2	1428104_at 1428105_at 1447518_at 1447519_x_at	1913	0.664	0.5900	Yes
54	MCM2	1434079_s_at 1448777_at	1953	0.651	0.5937	Yes
55	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	2004	0.634	0.5967	Yes
56	MAD2L1	1422460_at	2085	0.611	0.5982	Yes
57	ABCA2	1449302_at	2233	0.572	0.5962	No
58	SSRP1	1426788_a_at 1426789_s_at 1426790_at	2422	0.525	0.5920	No
59	FZD7	1450043_at 1450044_at	2710	0.466	0.5828	No
60	BLM	1448953_at	2776	0.456	0.5836	No
61	NELL2	1423560_at 1423561_at	3000	0.421	0.5770	No
62	IGSF4	1417376_a_at 1417377_at 1417378_at 1431611_a_at	3240	0.383	0.5692	No
63	DDX1	1415915_at 1440816_x_at	3287	0.377	0.5703	No
64	IARS	1426705_s_at 1452154_at	3608	0.341	0.5584	No
65	STRAP	1416566_at 1419913_at	3633	0.338	0.5602	No
66	SMC4	1427275_at 1427276_at 1441677_at 1452197_at	3761	0.328	0.5571	No
67	BRCA1	1424629_at 1424630_a_at 1427698_at 1443763_at 1451417_at	3894	0.317	0.5537	No
68	TXNRD1	1421529_a_at 1424486_a_at 1424487_x_at	4003	0.308	0.5514	No
69	COL2A1	1450567_a_at	4182	0.296	0.5457	No
70	MAP4K4	1422615_at 1440609_at 1448050_s_at 1459912_at	4839	0.259	0.5178	No
71	CDKN3	1415968_a_at 1415969_s_at 1430574_at	4856	0.259	0.5192	No
72	STMN1	1415849_s_at	4880	0.258	0.5203	No
73	ROR2	1423428_at 1446780_at	5013	0.252	0.5164	No
74	ACP1	1422716_a_at 1422717_at 1450720_at 1450721_at	5040	0.251	0.5173	No
75	CRABP2	1451191_at	5087	0.249	0.5173	No
76	BCL7A	1428207_at 1428208_at 1451855_at 1459416_at	5465	0.232	0.5020	No
77	H2AFZ	1441370_at	5496	0.231	0.5025	No
78	DDX23	1430050_at	5507	0.231	0.5040	No
79	CDK2	1416873_a_at 1447617_at	5549	0.229	0.5041	No
80	SCRN1	1428717_at 1428718_at	5749	0.221	0.4968	No
81	RRM1	1415878_at 1440073_at 1448127_at	5919	0.215	0.4908	No
82	SACS	1423010_at 1434958_at 1457775_at	6005	0.212	0.4887	No
83	WASF3	1425061_at 1444243_at	6130	0.207	0.4848	No
84	CKAP5	1430647_at 1437349_at 1442271_at	6204	0.204	0.4832	No
85	XRCC5	1451968_at	6415	0.198	0.4752	No
86	CIT	1426028_a_at 1427669_a_at 1458276_x_at	6538	0.194	0.4712	No
87	PCNA	1417947_at	7044	0.177	0.4495	No
88	KIF11	1435306_a_at 1452314_at 1452315_at	7084	0.176	0.4492	No
89	DLG5	1424198_at 1431186_at 1431187_s_at	7165	0.174	0.4470	No
90	SRPK1	1454042_a_at 1455107_at	7367	0.168	0.4392	No
91	TCERG1	1421033_a_at 1434434_s_at 1450100_a_at	8345	0.140	0.3956	No
92	KIF14	1445525_at	8535	0.136	0.3880	No
93	ELOVL2	1416444_at	8658	0.133	0.3835	No
94	COL13A1	1422866_at	8805	0.129	0.3779	No
95	SIX1	1427277_at	9032	0.123	0.3686	No
96	MYL6B	1430661_at	9572	0.110	0.3448	No
97	HMGA2	1422851_at 1443394_at 1446196_at 1450780_s_at 1450781_at 1458241_at	9590	0.110	0.3449	No
98	CHST1	1449147_at	9601	0.109	0.3454	No
99	MN1	1454867_at	9813	0.104	0.3366	No
100	NR2C1	1418605_at 1439490_at 1446194_at 1449157_at 1458338_x_at	10442	0.090	0.3085	No
101	BTAF1	1435248_a_at 1435249_at 1435953_at	10590	0.086	0.3025	No
102	FAM62A	1446311_at 1451099_at	11382	0.068	0.2668	No
103	NAP1L1	1420476_a_at 1420477_at 1420478_at 1420479_a_at 1429227_x_at 1437945_x_at 1440263_at 1452778_x_at	11391	0.068	0.2670	No
104	MEOX1	1417595_at	13169	0.024	0.1857	No
105	SS18	1419360_a_at 1419361_at 1436257_at 1458684_at	14094	-0.001	0.1433	No
106	MLXIP	1426979_at	15243	-0.038	0.0909	No
107	DDX52	1434607_at 1434608_at	15314	-0.041	0.0881	No
108	SV2A	1423406_at	15395	-0.044	0.0848	No
109	MSH2	1416988_at 1447888_x_at	15440	-0.046	0.0831	No
110	CDH2	1418815_at 1439307_at 1449244_at	15676	-0.055	0.0728	No
111	YWHAZ	1416102_at 1416103_at 1436971_x_at 1436981_a_at 1439005_x_at 1443893_at 1448218_s_at 1448219_a_at	15698	-0.056	0.0723	No
112	PRIM1	1418369_at 1444544_at 1449061_a_at	15709	-0.056	0.0723	No
113	PLK4	1419838_s_at 1426580_at 1452115_a_at	15985	-0.070	0.0603	No
114	ST6GAL1	1420927_at 1420928_at 1443581_at 1446739_at	16534	-0.101	0.0360	No
115	YAF2	1423399_a_at 1429839_a_at 1446073_at	16536	-0.102	0.0368	No
116	TAF5	1435474_at	17055	-0.139	0.0142	No
117	MSH6	1416915_at	17164	-0.149	0.0105	No
118	CHN1	1420545_a_at 1445691_at	17354	-0.166	0.0032	No
119	GCN1L1	1433713_at 1439472_at 1446543_at 1446991_at 1455879_at	17431	-0.174	0.0012	No
120	BAZ1A	1433599_at 1447930_at	17586	-0.188	-0.0043	No
121	MIZF	1440255_at	17707	-0.202	-0.0081	No
122	LRP4	1426288_at	17785	-0.211	-0.0098	No
123	EZH2	1416544_at 1444263_at	17898	-0.223	-0.0131	No
124	CENPF	1427161_at 1452334_at 1458447_at	17928	-0.227	-0.0125	No
125	ADIPOR2	1434329_s_at 1437864_at	18147	-0.260	-0.0203	No
126	GREB1	1419593_at 1439568_at 1445323_at 1445324_s_at	18395	-0.294	-0.0292	No
127	MPHOSPH9	1419909_at 1419910_at 1431053_at 1438063_at 1440915_at 1449659_s_at	18453	-0.301	-0.0293	No
128	PFKP	1416069_at 1430634_a_at 1437759_at	18728	-0.342	-0.0390	No
129	SALL2	1416638_at	18801	-0.355	-0.0393	No
130	CACNB3	1448656_at	18979	-0.391	-0.0441	No
131	DLG7	1438811_at 1455730_at	19034	-0.403	-0.0432	No
132	CXCR4	1448710_at	19495	-0.509	-0.0600	No
133	SHMT2	1426423_at 1434204_x_at 1455084_x_at 1455985_x_at	19921	-0.631	-0.0742	No
134	LIG3	1423419_at 1425865_a_at 1431715_a_at 1437198_at 1453986_at	19948	-0.640	-0.0700	No
135	TTK	1442594_at 1449171_at	20839	-1.090	-0.1017	No
136	PCBP2	1421743_a_at 1435881_at	20969	-1.218	-0.0974	No
137	NUP188	1427047_at 1442314_at	21000	-1.245	-0.0883	No
138	PPP2R2A	1429715_at 1437730_at 1453260_a_at	21008	-1.250	-0.0781	No
139	SEPT6	1420876_a_at 1420877_at 1424181_at 1431973_at 1436819_at 1440939_at 1445665_at 1460286_at	21317	-1.644	-0.0784	No
140	GTF3C2	1428448_a_at 1428449_at 1440307_at 1452780_at 1452781_a_at	21488	-2.002	-0.0693	No
141	BAZ1B	1420975_at 1434824_at 1437420_at 1450068_at	21552	-2.157	-0.0541	No
142	CCND2	1416122_at 1416123_at 1416124_at 1430127_a_at 1434745_at 1448229_s_at 1455956_x_at	21828	-3.314	-0.0388	No
143	AURKA	1424511_at 1440129_at	21926	-5.196	0.0005	No