Details for gene set HSA00190_OXIDATIVE

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	SCID
GeneSet	HSA00190_OXIDATIVE_PHOSPHORYLATION
Enrichment Score (ES)	0.68645006
Normalized Enrichment Score (NES)	2.1207745
Nominal p-value	0.0
FDR q-value	5.1044225E-4
FWER p-Value	0.0010

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	COX5B	1416902_a_at 1435613_x_at 1436149_at 1448514_at 1454716_x_at 1456588_x_at	1	6.901	0.0815	Yes
2	COX8A	1416112_at 1436409_at 1448222_x_at	7	6.333	0.1562	Yes
3	COX17	1434435_s_at 1434871_at	20	5.090	0.2158	Yes
4	ATP5C1	1416058_s_at 1438809_at	29	4.740	0.2714	Yes
5	NDUFA10	1418068_at 1448934_at	51	4.175	0.3198	Yes
6	NDUFB9	1436803_a_at 1452184_at 1455934_at	54	4.118	0.3684	Yes
7	ATP5G1	1416020_a_at 1444874_at	227	2.644	0.3918	Yes
8	ATP6V1H	1415826_at 1447659_x_at 1457639_at	312	2.277	0.4149	Yes
9	NDUFB2	1416834_x_at 1442658_at 1448483_a_at 1453806_at	328	2.212	0.4403	Yes
10	NDUFS8	1423907_a_at 1423908_at 1434212_at 1434213_x_at 1434579_x_at 1455283_x_at	337	2.196	0.4659	Yes
11	ATP5G2	1415980_at 1456128_at	502	1.824	0.4800	Yes
12	PPA1	1416939_at	672	1.482	0.4897	Yes
13	NDUFC1	1416285_at 1448284_a_at	847	1.273	0.4968	Yes
14	NDUFS7	1424313_a_at 1451312_at	864	1.252	0.5109	Yes
15	ATP6V0D1	1415671_at 1442216_at	1015	1.131	0.5174	Yes
16	SDHD	1428235_at 1437489_x_at	1135	1.031	0.5241	Yes
17	NDUFS4	1418117_at 1438166_x_at 1444464_at 1448959_at 1459760_at	1166	1.014	0.5348	Yes
18	CYC1	1416604_at	1259	0.960	0.5419	Yes
19	UQCR	1448292_at	1321	0.925	0.5500	Yes
20	ATP5E	1416567_s_at	1345	0.915	0.5598	Yes
21	SDHB	1418005_at	1446	0.863	0.5654	Yes
22	ATP5L	1448203_at	1485	0.846	0.5737	Yes
23	NDUFV1	1415966_a_at 1415967_at 1456015_x_at	1496	0.842	0.5832	Yes
24	NDUFS6	1433603_at	1631	0.777	0.5862	Yes
25	NDUFA12	1418814_s_at 1433513_x_at	1637	0.773	0.5951	Yes
26	NDUFA9	1416663_at	1706	0.737	0.6007	Yes
27	COX6C	1415970_at 1434491_a_at	1922	0.661	0.5987	Yes
28	NDUFA4	1424085_at	1943	0.654	0.6055	Yes
29	NDUFB10	1428322_a_at	2039	0.624	0.6085	Yes
30	NDUFV2	1428179_at 1438159_x_at 1452692_a_at	2112	0.603	0.6124	Yes
31	COX7A1	1418709_at	2114	0.603	0.6194	Yes
32	UQCRC1	1428782_a_at	2115	0.601	0.6266	Yes
33	NDUFB6	1434056_a_at 1434057_at	2181	0.583	0.6305	Yes
34	COX7A2	1416970_a_at 1416971_at	2232	0.572	0.6349	Yes
35	COX6B2	1435275_at	2237	0.571	0.6415	Yes
36	COX5A	1415933_a_at 1439267_x_at 1448153_at	2259	0.565	0.6472	Yes
37	NDUFB5	1417102_a_at 1448589_at	2285	0.558	0.6527	Yes
38	NDUFA8	1423692_at	2355	0.539	0.6559	Yes
39	ATP5O	1416278_a_at	2361	0.538	0.6620	Yes
40	NDUFS1	1425143_a_at 1453354_at	2398	0.531	0.6666	Yes
41	PPA2	1424488_a_at	2518	0.505	0.6672	Yes
42	ATP5F1	1426742_at 1433562_s_at	2558	0.497	0.6713	Yes
43	ATP5J2	1416269_at 1435395_s_at	2586	0.491	0.6758	Yes
44	TCIRG1	1420635_a_at	2627	0.483	0.6797	Yes
45	NDUFA5	1417285_a_at 1417286_at	2632	0.483	0.6852	Yes
46	NDUFA6	1448427_at	2922	0.431	0.6771	Yes
47	COX4I2	1421373_at	3142	0.396	0.6717	Yes
48	ATP5J	1416143_at	3166	0.393	0.6753	Yes
49	SDHC	1435986_x_at 1448630_a_at	3176	0.391	0.6795	Yes
50	NDUFS2	1451096_at	3223	0.385	0.6820	Yes
51	NDUFA7	1422976_x_at 1428360_x_at 1436567_a_at 1450818_a_at 1455749_x_at	3311	0.374	0.6824	Yes
52	ATP5B	1416829_at	3364	0.368	0.6844	Yes
53	ATP5I	1422525_at 1434053_x_at 1450640_x_at	3413	0.362	0.6865	Yes
54	NDUFA2	1417368_s_at	3685	0.334	0.6780	No
55	ATP5A1	1420037_at 1423111_at 1449710_s_at	3857	0.320	0.6739	No
56	NDUFS3	1423737_at	3907	0.316	0.6754	No
57	NDUFA1	1422241_a_at	3924	0.315	0.6784	No
58	NDUFB7	1416417_a_at 1448331_at	4053	0.304	0.6762	No
59	NDUFA3	1428464_at 1430149_at 1452790_x_at	4119	0.300	0.6767	No
60	NDUFB3	1416547_at	4243	0.292	0.6745	No
61	UQCRQ	1427880_at 1430326_s_at 1437134_at 1452613_at	4254	0.292	0.6775	No
62	ATP6V0B	1416769_s_at 1425448_x_at 1437013_x_at	4495	0.276	0.6698	No
63	ATP5D	1423716_s_at 1456580_s_at	5080	0.249	0.6460	No
64	ATP6V1G2	1417799_at	5177	0.245	0.6445	No
65	UQCRFS1	1450968_at	5182	0.245	0.6472	No
66	COX4I1	1448322_a_at	5260	0.241	0.6465	No
67	ATP4A	1421286_a_at	5415	0.235	0.6422	No
68	COX6B1	1416565_at 1436757_a_at	5469	0.232	0.6426	No
69	COX6A2	1417607_at 1457633_x_at	6232	0.203	0.6101	No
70	ATP4B	1448911_at	6556	0.193	0.5975	No
71	ATP6V0A4	1422030_at 1443732_at	7390	0.167	0.5614	No
72	COX6A1	1417417_a_at	7695	0.157	0.5493	No
73	COX8C	1443789_x_at 1455167_at	7995	0.149	0.5374	No
74	ATP5G3	1454661_at	8034	0.148	0.5374	No
75	ATP6V1F	1423993_at	8354	0.140	0.5244	No
76	ATP6V1C2	1430306_a_at	8607	0.134	0.5145	No
77	NDUFA11	1429708_at 1444154_at	8659	0.133	0.5137	No
78	NDUFA13	1430713_s_at	9251	0.118	0.4880	No
79	COX10	1429329_at 1446223_at 1459977_x_at	9962	0.101	0.4567	No
80	ATP6V1E2	1450552_at	10237	0.094	0.4452	No
81	UQCRC2	1428631_a_at 1435757_a_at	10607	0.086	0.4294	No
82	NDUFC2	1431670_at	11217	0.072	0.4023	No
83	SDHA	1426688_at 1426689_s_at 1445317_at	11345	0.069	0.3973	No
84	ATP6V0D2	1434798_at 1444176_at	11804	0.057	0.3770	No
85	NDUFB11	1416056_a_at 1416057_at 1455911_x_at	11806	0.057	0.3776	No
86	ATP12A	1449475_at	12231	0.047	0.3588	No
87	NDUFB4	1428075_at 1428076_s_at 1432427_at	12291	0.046	0.3566	No
88	UQCRH	1452133_at 1453229_s_at	12494	0.041	0.3478	No
89	ATP6V0A1	1417632_at 1425227_a_at 1459924_at 1460650_at	13136	0.025	0.3188	No
90	ATP5H	1423676_at 1435112_a_at	13608	0.012	0.2973	No
91	ATP6V1B1	1419373_at	14736	-0.021	0.2460	No
92	NDUFS5	1416494_at 1416495_s_at	16242	-0.082	0.1780	No
93	COX7C	1448112_at 1459884_at 1459885_s_at	16794	-0.118	0.1542	No
94	NDUFB8	1448198_a_at 1458404_at	17221	-0.154	0.1365	No
95	ATP6V0A2	1424513_at 1434791_at 1449870_a_at	17384	-0.169	0.1310	No
96	COX15	1426693_x_at 1437982_x_at 1452146_a_at 1460376_a_at	17422	-0.173	0.1314	No
97	ATP6V1E1	1420038_at 1449711_at 1449712_s_at 1457049_at	17758	-0.209	0.1185	No
98	ATP6V1B2	1415814_at 1419883_s_at 1446465_at 1449649_at	18299	-0.281	0.0971	No
99	ATP6AP1	1449622_s_at	18591	-0.320	0.0876	No
100	ATP6V1A	1422508_at 1445916_at 1450634_at	18778	-0.351	0.0832	No
101	ATP6V1G1	1423255_at	19242	-0.449	0.0673	No
102	ATP6V1C1	1419544_at 1419545_a_at 1419546_at	19313	-0.466	0.0696	No
103	ATP6V0C	1416392_a_at 1435732_x_at 1438925_x_at	20187	-0.731	0.0382	No
104	NDUFAB1	1428159_s_at 1428160_at 1435934_at 1447919_x_at 1453565_at 1458678_at	20293	-0.778	0.0426	No
105	ATP6V1D	1416951_a_at 1416952_at 1438993_a_at	20853	-1.101	0.0300	No
106	UQCRB	1416337_at 1455997_a_at	21322	-1.651	0.0281	No