Details for gene set HADDAD_HPCLYMPHO

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	HADDAD_HPCLYMPHO_ENRICHED
Enrichment Score (ES)	-0.5126807
Normalized Enrichment Score (NES)	-1.7318131
Nominal p-value	0.0
FDR q-value	0.17782716
FWER p-Value	0.747

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TRIB2	1426640_s_at 1426641_at 1459852_x_at	340	2.186	-0.0018	No
2	TIA1	1416812_at 1416813_at 1416814_at 1423763_x_at 1431708_a_at 1437934_at 1441834_x_at 1453803_at 1454778_x_at	371	2.115	0.0102	No
3	MEF2C	1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at	392	2.064	0.0224	No
4	PPM1A	1415678_at 1417221_at 1425537_at 1429500_at 1429501_s_at 1443903_at 1451943_a_at 1453171_s_at	397	2.052	0.0353	No
5	HIST1H3D	1427863_at 1453573_at	406	2.033	0.0478	No
6	PKD2	1417753_at 1441870_s_at	436	1.963	0.0589	No
7	CORO2B	1434326_x_at 1434755_at	500	1.826	0.0676	No
8	SOCS2	1418507_s_at 1438470_at 1441476_at 1442586_at 1446085_at 1449109_at	513	1.797	0.0784	No
9	TOP2A	1427724_at 1442454_at 1454694_a_at	589	1.644	0.0854	No
10	DDR1	1415797_at 1415798_at 1435820_x_at 1437619_x_at 1438367_x_at 1439382_x_at 1456226_x_at 1459990_at	605	1.611	0.0949	No
11	PLEKHF2	1423861_at 1423862_at	723	1.424	0.0986	No
12	SOD2	1417193_at 1417194_at 1442994_at 1444531_at 1448610_a_at 1454976_at	815	1.318	0.1027	No
13	PCAF	1434037_s_at 1444473_at 1445105_at 1450821_at	905	1.220	0.1064	No
14	ATR	1427197_at 1438921_at 1445091_at	919	1.216	0.1135	No
15	LRP2BP	1429704_at 1430684_s_at 1432039_a_at 1439821_at	1012	1.135	0.1165	No
16	VDAC1	1415998_at 1436992_x_at 1437192_x_at 1437452_x_at 1437947_x_at	1274	0.951	0.1105	No
17	UBE2D2	1416475_at 1416476_a_at 1416477_at 1439655_at 1445885_at 1448356_at	1414	0.881	0.1097	No
18	ANAPC5	1416906_at 1433822_x_at 1435177_a_at 1435178_x_at 1453307_a_at 1456695_x_at	1447	0.863	0.1137	No
19	TLE1	1422751_at 1434033_at	1476	0.850	0.1178	No
20	RB1CC1	1418968_at 1431605_at 1449292_at	1798	0.704	0.1074	No
21	RBM6	1417213_a_at 1440223_at 1452466_a_at 1458912_at	1939	0.655	0.1052	No
22	CD72	1426112_a_at	1975	0.646	0.1076	No
23	CD9	1416066_at	2024	0.628	0.1094	No
24	RRM2	1416120_at 1434437_x_at 1448226_at	2066	0.615	0.1114	No
25	POU2AF1	1416957_at	2139	0.596	0.1119	No
26	CTBP2	1422887_a_at 1439823_at	2269	0.562	0.1095	No
27	ITPR1	1417279_at 1443492_at 1457189_at 1460203_at	2320	0.547	0.1107	No
28	REXO2	1451259_at	2414	0.527	0.1097	No
29	SUV420H1	1434999_at 1442764_at 1451817_at 1455171_at	2539	0.500	0.1072	No
30	HIST1H1E	1422398_at 1440330_at 1443209_at 1445565_at	2556	0.498	0.1096	No
31	HIST1H4H	1428014_at 1431333_at	2601	0.487	0.1107	No
32	HPS4	1448629_at	2617	0.485	0.1131	No
33	LRMP	1448409_at	2619	0.484	0.1161	No
34	CEP135	1444201_at	2634	0.482	0.1185	No
35	GNG7	1455190_at	2770	0.457	0.1152	No
36	ATM	1421205_at 1428830_at	2801	0.453	0.1167	No
37	QRSL1	1429317_at 1456542_s_at	2839	0.445	0.1178	No
38	PTPRE	1418539_a_at 1418540_a_at 1459638_at	3024	0.415	0.1120	No
39	FMR1	1423369_at 1426086_a_at 1452550_a_at	3146	0.395	0.1089	No
40	DBN1	1426024_a_at 1451734_a_at	3239	0.383	0.1071	No
41	ANKRD10	1416065_a_at 1429304_at 1429305_at 1440170_at 1447832_x_at 1448199_at	3595	0.342	0.0929	No
42	RHOB	1449110_at	4240	0.292	0.0651	No
43	MEF2A	1421252_a_at 1425426_a_at 1427185_at 1427186_a_at 1452347_at	4244	0.292	0.0668	No
44	ZBTB10	1458695_at	4304	0.288	0.0659	No
45	PDCD6	1416027_at	4486	0.277	0.0593	No
46	MME	1422975_at	4554	0.273	0.0580	No
47	PXDN	1428259_at	4775	0.263	0.0495	No
48	MAP4K4	1422615_at 1440609_at 1448050_s_at 1459912_at	4839	0.259	0.0483	No
49	NPY	1419127_at	4948	0.255	0.0449	No
50	UXS1	1426275_a_at 1452011_a_at	5086	0.249	0.0402	No
51	GPR125	1426782_at 1431034_at 1444300_at	5142	0.246	0.0392	No
52	SH3TC1	1427619_a_at	5202	0.244	0.0380	No
53	VPS13A	1431327_at 1440146_at 1440482_at 1456592_at 1457674_at	5209	0.243	0.0393	No
54	NID2	1423516_a_at	5328	0.238	0.0354	No
55	BARD1	1420594_at	5359	0.237	0.0355	No
56	HRK	1439854_at 1450366_at	5795	0.220	0.0169	No
57	TMEM118	1435623_at	5918	0.215	0.0126	No
58	HS3ST1	1423450_a_at	5940	0.214	0.0130	No
59	CCDC81	1431839_a_at	5974	0.213	0.0128	No
60	TOB1	1423176_at 1440844_at	6119	0.208	0.0075	No
61	P2RX5	1449433_at	6154	0.207	0.0073	No
62	TOP2B	1416731_at 1416732_at 1448458_at 1456688_at	6234	0.203	0.0049	No
63	DNASE2B	1450237_at	6590	0.192	-0.0102	No
64	AEBP1	1422514_at 1450637_a_at	6674	0.189	-0.0128	No
65	CIITA	1421210_at 1421211_a_at 1447075_at	6966	0.179	-0.0251	No
66	PCNA	1417947_at	7044	0.177	-0.0275	No
67	AKAP12	1419706_a_at 1458235_at	7196	0.173	-0.0334	No
68	RPL35A	1417317_s_at	7610	0.160	-0.0514	No
69	CSH2	1415835_at	7659	0.159	-0.0526	No
70	EFNB2	1419638_at 1419639_at 1440069_at 1449548_at 1449549_at	7697	0.157	-0.0533	No
71	COBL	1434917_at 1442076_at	7821	0.154	-0.0580	No
72	TSPAN14	1423924_s_at	8065	0.147	-0.0683	No
73	EIF1AY	1419736_a_at 1437071_at 1449576_at	8313	0.141	-0.0787	No
74	SCHIP1	1423025_a_at 1437700_at 1446421_at 1458588_at	8587	0.135	-0.0905	No
75	ALDH5A1	1453065_at	8619	0.134	-0.0910	No
76	MYLK	1425504_at 1425505_at 1425506_at	8898	0.127	-0.1030	No
77	SEMA6A	1421414_a_at 1425903_at 1436458_at	8935	0.126	-0.1039	No
78	PLXNA2	1429772_at 1446420_at 1451753_at 1453286_at 1455037_at 1458102_at 1459033_at	9025	0.123	-0.1072	No
79	PPFIBP1	1443029_at 1445577_at 1452759_s_at	9260	0.118	-0.1172	No
80	IGLL1	1420176_x_at 1420177_at	9290	0.117	-0.1178	No
81	SCN3A	1421705_at 1439204_at	9733	0.106	-0.1375	No
82	SNN	1422310_at 1452789_at	9771	0.105	-0.1386	No
83	LRIG1	1419928_at 1434210_s_at 1441375_at 1449893_a_at 1458823_at	10052	0.099	-0.1508	No
84	TCF3	1436207_at 1450117_at	10063	0.098	-0.1507	No
85	MS4A1	1423226_at 1450912_at	10091	0.098	-0.1513	No
86	ELL3	1442514_a_at	10136	0.097	-0.1527	No
87	P4HA2	1417149_at	10190	0.095	-0.1545	No
88	EIF2AK3	1430371_x_at 1449278_at 1453505_a_at	10466	0.089	-0.1666	No
89	TAF9B	1434960_at 1447829_x_at	10829	0.081	-0.1828	No
90	SIAH2	1448170_at 1448171_at	11317	0.070	-0.2048	No
91	VPREB3	1422921_at	11526	0.064	-0.2140	No
92	BLNK	1451780_at	11936	0.054	-0.2325	No
93	PHF15	1430081_at 1455345_at	12053	0.051	-0.2375	No
94	RPS11	1424000_a_at	12372	0.044	-0.2519	No
95	MAG	1460219_at	12656	0.037	-0.2647	No
96	CITED2	1417129_a_at 1421267_a_at 1439915_at 1440091_at 1443561_at 1443926_at 1445638_at 1446176_at 1447861_x_at 1457632_s_at 1459301_at	12674	0.037	-0.2652	No
97	TMCC1	1437776_at 1440384_at 1455353_at	12858	0.033	-0.2734	No
98	IL1A	1421473_at	12987	0.029	-0.2791	No
99	PCDH9	1439322_at 1442659_at 1444215_at 1444724_at 1445052_at 1445061_at 1457973_at	12998	0.029	-0.2794	No
100	MOG	1448768_at	13010	0.029	-0.2797	No
101	TCL1A	1422458_at	13244	0.022	-0.2903	No
102	CAV1	1449145_a_at	13455	0.016	-0.2999	No
103	ALOX5	1441962_at	13651	0.011	-0.3088	No
104	POU4F1	1429667_at 1429668_at	13781	0.008	-0.3147	No
105	MPPED2	1431751_a_at 1435285_at	13915	0.004	-0.3208	No
106	PLXNA1	1421232_at 1428623_at	14144	-0.002	-0.3313	No
107	JUN	1417409_at 1448694_at	14497	-0.014	-0.3474	No
108	CD19	1450570_a_at	14678	-0.020	-0.3556	No
109	IRF2	1418265_s_at 1447527_at	14706	-0.020	-0.3567	No
110	PTPRK	1423277_at 1423278_at 1431680_a_at 1441276_at 1441277_s_at 1441644_at 1443491_at 1443699_at 1444763_at	14713	-0.021	-0.3568	No
111	GLRX	1416592_at 1416593_at	14826	-0.024	-0.3618	No
112	PSPC1	1423192_at 1423193_at 1444748_at 1444957_at 1457723_at	14932	-0.027	-0.3665	No
113	E2F5	1417444_at 1447625_at 1460207_s_at	14999	-0.030	-0.3694	No
114	DUSP26	1425848_a_at	15082	-0.032	-0.3729	No
115	AK1	1422184_a_at 1423988_at	15085	-0.032	-0.3728	No
116	NGLY1	1417827_at 1440463_at 1441833_at	15107	-0.033	-0.3736	No
117	RCBTB1	1430213_at 1456433_at	15152	-0.035	-0.3754	No
118	ARHGEF7	1424482_at 1449066_a_at	15232	-0.038	-0.3788	No
119	MLXIP	1426979_at	15243	-0.038	-0.3790	No
120	PPP3CC	1420743_a_at 1430025_at	15477	-0.048	-0.3894	No
121	AUTS2	1427293_a_at 1438680_at 1441869_x_at 1442360_at 1443062_at 1443070_at 1443770_x_at 1444069_at 1445307_at 1445469_at 1445538_at 1446849_at 1452379_at 1457139_at 1458592_at 1459338_at	15478	-0.048	-0.3891	No
122	STAG3	1460229_at	15484	-0.048	-0.3890	No
123	ZFYVE16	1447947_at	15563	-0.051	-0.3923	No
124	FJX1	1422733_at 1450728_at 1457160_at	15584	-0.052	-0.3929	No
125	CALM1	1417365_a_at 1417366_s_at 1433592_at 1454611_a_at 1455571_x_at	15628	-0.053	-0.3946	No
126	FAIM3	1429889_at	15707	-0.056	-0.3978	No
127	KCNJ2	1450503_at	15909	-0.066	-0.4066	No
128	EFHC1	1453159_at	15925	-0.067	-0.4069	No
129	BANK1	1442646_at 1456328_at	16059	-0.073	-0.4126	No
130	HIST1H1C	1416101_a_at 1436994_a_at 1438204_at	16154	-0.078	-0.4164	No
131	BLK	1422775_at	16285	-0.085	-0.4218	No
132	CHD7	1437745_at 1441154_at 1446621_at 1448026_at	16660	-0.109	-0.4384	No
133	CD24	1416034_at 1437502_x_at 1448182_a_at	16822	-0.120	-0.4450	No
134	DNAJB14	1430561_at	16842	-0.121	-0.4451	No
135	ING1	1416860_s_at 1433267_at 1448496_a_at 1454534_at	16893	-0.125	-0.4467	No
136	PKN2	1437295_at 1437296_at	16897	-0.126	-0.4460	No
137	IL7R	1448575_at 1448576_at	16982	-0.133	-0.4490	No
138	MSX1	1417127_at 1448601_s_at	17047	-0.138	-0.4511	No
139	APRIN	1435242_at 1436161_at 1441553_at	17050	-0.138	-0.4503	No
140	FHIT	1425893_a_at	17090	-0.141	-0.4512	No
141	KIF13A	1439532_s_at 1440578_at 1442252_at 1446026_at 1447853_x_at 1451890_at 1455746_at	17137	-0.145	-0.4524	No
142	HIP1R	1425551_at 1425552_at 1425553_s_at 1444832_at	17239	-0.155	-0.4561	No
143	SH2D3C	1415886_at	17281	-0.159	-0.4570	No
144	RIMS3	1435971_at 1459042_at	17386	-0.169	-0.4607	No
145	WFS1	1448411_at	17423	-0.173	-0.4612	No
146	TPD52	1419493_a_at 1419494_a_at 1436008_at 1458668_at	17495	-0.180	-0.4634	No
147	JMJD1C	1426900_at 1439998_at 1441592_at 1448049_at 1458521_at	17667	-0.198	-0.4700	No
148	DCP2	1430150_at 1455070_at	17883	-0.221	-0.4785	No
149	EZH2	1416544_at 1444263_at	17898	-0.223	-0.4777	No
150	SNX2	1460224_at	17941	-0.229	-0.4782	No
151	JARID1D	1424903_at 1452562_at 1452563_a_at	18118	-0.256	-0.4847	No
152	GPM6B	1423091_a_at 1425942_a_at 1453514_at	18449	-0.300	-0.4980	No
153	NELF	1436959_x_at 1439398_x_at 1442706_at 1449474_a_at	18491	-0.305	-0.4979	No
154	RB1	1417850_at 1441494_at 1444400_at 1444454_at 1457447_at	18543	-0.312	-0.4983	No
155	CD79A	1418830_at	18548	-0.313	-0.4965	No
156	COL5A1	1416740_at 1416741_at 1434479_at	18651	-0.329	-0.4991	No
157	GADD45G	1453851_a_at	18657	-0.330	-0.4972	No
158	TGIF	1422286_a_at	18672	-0.332	-0.4958	No
159	P2RY14	1424733_at	18849	-0.364	-0.5016	No
160	CACNB3	1448656_at	18979	-0.391	-0.5050	No
161	IRF4	1421173_at 1421174_at	19146	-0.427	-0.5100	Yes
162	MDM1	1445709_at 1451053_a_at	19148	-0.428	-0.5073	Yes
163	USP34	1434392_at 1434393_at 1444437_at 1446112_at 1460126_at	19253	-0.452	-0.5092	Yes
164	ELK3	1417662_at 1442986_at 1445886_at 1448797_at	19314	-0.466	-0.5090	Yes
165	VPREB1	1449869_at	19352	-0.474	-0.5077	Yes
166	EFHA1	1454808_at	19418	-0.489	-0.5076	Yes
167	TNFRSF7	1452389_at	19488	-0.507	-0.5076	Yes
168	CXCR4	1448710_at	19495	-0.509	-0.5046	Yes
169	TLE4	1425650_at 1430384_at 1450853_at	19550	-0.526	-0.5038	Yes
170	IRS2	1443969_at	19710	-0.567	-0.5075	Yes
171	AP1B1	1416279_at	19724	-0.570	-0.5045	Yes
172	LEF1	1421299_a_at 1436398_at 1440760_at	19824	-0.603	-0.5052	Yes
173	PIAS1	1422581_at 1446448_at 1455486_at 1455611_at	19898	-0.621	-0.5047	Yes
174	TCF4	1416723_at 1416724_x_at 1416725_at 1424089_a_at 1434148_at 1434149_at 1439336_at 1440106_at 1446386_at 1458201_at	19931	-0.634	-0.5021	Yes
175	DYRK2	1428637_at 1436918_at 1456502_at 1457667_x_at	19965	-0.648	-0.4995	Yes
176	TTC13	1437709_x_at 1438631_x_at 1451351_at	20051	-0.677	-0.4991	Yes
177	PPM1B	1425330_a_at 1426382_at 1441479_at 1451669_at	20193	-0.732	-0.5010	Yes
178	FOXO1A	1416981_at 1416982_at 1416983_s_at 1459170_at	20250	-0.761	-0.4987	Yes
179	NEIL1	1452871_at	20383	-0.813	-0.4997	Yes
180	ABCG2	1422906_at	20407	-0.828	-0.4955	Yes
181	SMARCA4	1426804_at 1426805_at	20492	-0.867	-0.4938	Yes
182	DACT1	1417937_at	20542	-0.888	-0.4905	Yes
183	ZHX2	1455210_at	20574	-0.905	-0.4861	Yes
184	CDC2L5	1440833_at 1452897_at 1458313_at	20579	-0.907	-0.4806	Yes
185	RAD52	1416602_a_at 1426296_at	20602	-0.922	-0.4757	Yes
186	VIL2	1450850_at 1456725_x_at	20723	-1.010	-0.4749	Yes
187	CENTD1	1436895_at 1446649_at 1452291_at 1456337_at 1458173_at	20747	-1.027	-0.4694	Yes
188	RAG2	1418065_at	20754	-1.034	-0.4631	Yes
189	DNTT	1420166_at 1449757_x_at 1450545_a_at	20825	-1.083	-0.4595	Yes
190	LAPTM5	1426025_s_at 1436905_x_at 1447742_at 1459841_x_at	20894	-1.142	-0.4554	Yes
191	PIK3CD	1422991_at 1422992_s_at 1443798_at 1453281_at 1458321_at	20914	-1.159	-0.4489	Yes
192	BTG1	1426083_a_at 1437455_a_at	20915	-1.159	-0.4415	Yes
193	DDX3Y	1426438_at 1426439_at 1452077_at	20941	-1.185	-0.4352	Yes
194	PCBP2	1421743_a_at 1435881_at	20969	-1.218	-0.4287	Yes
195	FOXP1	1421140_a_at 1421141_a_at 1421142_s_at 1435222_at 1438802_at 1443258_at 1446280_at 1447209_at 1455242_at 1456851_at	21031	-1.284	-0.4233	Yes
196	STK38	1416252_at 1431303_at 1439938_at	21035	-1.285	-0.4153	Yes
197	SNTB2	1420371_at 1420372_at 1436986_at 1449840_at	21056	-1.304	-0.4080	Yes
198	CD79B	1417640_at	21072	-1.317	-0.4003	Yes
199	TUBA1	1418884_x_at	21146	-1.412	-0.3947	Yes
200	ELF2	1418275_a_at 1418276_at 1428045_a_at 1444574_at	21184	-1.476	-0.3871	Yes
201	DCK	1428838_a_at 1439012_a_at 1449176_a_at	21284	-1.599	-0.3815	Yes
202	ENTPD4	1431761_at 1438177_x_at 1447900_x_at 1449190_a_at	21293	-1.612	-0.3716	Yes
203	ARID5B	1420972_at 1420973_at 1434283_at 1442176_at 1445423_at 1456831_at 1456973_at 1457483_at 1458238_at	21309	-1.632	-0.3620	Yes
204	EDEM1	1424065_at 1451218_at	21355	-1.703	-0.3532	Yes
205	BTG2	1416250_at 1448272_at	21365	-1.719	-0.3427	Yes
206	SSBP2	1429951_at 1438423_at 1449815_a_at 1451542_at	21397	-1.787	-0.3328	Yes
207	WSB2	1421846_at 1421847_at 1438129_at	21503	-2.041	-0.3247	Yes
208	SMAD1	1416081_at 1448208_at 1459843_s_at	21506	-2.046	-0.3118	Yes
209	CD69	1428735_at	21507	-2.047	-0.2988	Yes
210	ISG20	1419569_a_at	21521	-2.074	-0.2863	Yes
211	CDKN1B	1419497_at 1434045_at	21588	-2.239	-0.2751	Yes
212	CAPN3	1426043_a_at 1433681_x_at	21625	-2.358	-0.2618	Yes
213	CRIM1	1426951_at 1442548_at 1452253_at 1458497_at 1459632_at	21626	-2.367	-0.2468	Yes
214	SLC35D1	1433595_at 1445629_at	21627	-2.369	-0.2318	Yes
215	SEC22B	1415766_at 1449063_at	21712	-2.767	-0.2181	Yes
216	RASGRP1	1421176_at 1431749_a_at 1434295_at 1450143_at	21713	-2.773	-0.2005	Yes
217	ZFP36L1	1422528_a_at 1450644_at	21755	-2.894	-0.1840	Yes
218	PRDM2	1429251_at 1444123_at 1453068_at	21763	-2.922	-0.1658	Yes
219	BACH2	1421343_at 1437667_a_at 1439468_at 1440304_at 1441657_at 1442605_at 1443263_at 1446929_at 1458730_at 1459136_at	21768	-2.956	-0.1472	Yes
220	ID3	1416630_at	21780	-3.031	-0.1285	Yes
221	IGF2R	1424111_at 1424112_at 1440979_at 1445966_at 1457356_at	21786	-3.055	-0.1094	Yes
222	CYFIP2	1428347_at 1442167_at 1444351_at 1449273_at	21827	-3.309	-0.0902	Yes
223	VAMP1	1421862_a_at 1421863_at	21835	-3.343	-0.0693	Yes
224	CDKN2C	1416868_at 1439164_at	21847	-3.418	-0.0482	Yes
225	RAG1	1440574_at 1450680_at	21883	-3.739	-0.0261	Yes
226	MGAT5	1425744_a_at 1428643_at 1428644_at 1443444_at	21911	-4.485	0.0012	Yes