Details for gene set BRCA1KO_MEF

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	BRCA1KO_MEF_DN
Enrichment Score (ES)	-0.59635216
Normalized Enrichment Score (NES)	-1.7546108
Nominal p-value	0.0
FDR q-value	0.1662565
FWER p-Value	0.636

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ZFX	1419565_a_at 1425972_a_at 1428046_a_at 1449512_a_at	262	2.463	0.0380	No
2	MEF2C	1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at	392	2.064	0.0740	No
3	UTX	1427235_at 1427672_a_at 1440524_at 1441201_at 1445198_at 1446234_at 1446278_at	947	1.192	0.0728	No
4	FAF1	1418242_at 1434370_s_at	2178	0.584	0.0284	No
5	NET1	1421321_a_at 1457830_at	2293	0.556	0.0344	No
6	USP47	1426976_at 1426977_at 1457454_at	2474	0.513	0.0366	No
7	TGFBR3	1425620_at 1433795_at 1440041_at 1442332_at 1447314_at 1459355_at	2724	0.465	0.0346	No
8	FMR1	1423369_at 1426086_a_at 1452550_a_at	3146	0.395	0.0234	No
9	STK10	1417751_at 1459736_at	3385	0.366	0.0199	No
10	CDC2L6	1434997_at 1442225_at	4864	0.259	-0.0424	No
11	GFRA1	1421973_at 1439015_at 1450440_at	4945	0.255	-0.0409	No
12	NCOA1	1418594_a_at 1434515_at 1439883_at 1443397_at 1443438_at 1459277_at	5594	0.227	-0.0659	No
13	ROCK2	1423592_at 1451041_at	5625	0.226	-0.0627	No
14	DCLRE1A	1417904_at 1432097_a_at 1442329_at	6585	0.192	-0.1027	No
15	ABCA1	1421839_at 1421840_at 1450392_at	7199	0.173	-0.1272	No
16	PDIA4	1416497_at	7607	0.160	-0.1426	No
17	UBE2L3	1417907_at 1417908_s_at 1448879_at 1448880_at	8212	0.144	-0.1673	No
18	RAI14	1417400_at 1417401_at 1441030_at 1444777_at	9462	0.113	-0.2222	No
19	CASP1	1449265_at	9781	0.105	-0.2346	No
20	CHD1	1420990_at 1444787_at 1444788_x_at 1450077_at 1457473_at	10707	0.084	-0.2752	No
21	BNIP3	1422470_at	11206	0.072	-0.2965	No
22	TJP1	1417749_a_at	11230	0.072	-0.2961	No
23	CCPG1	1420127_s_at 1424420_at 1447003_at	11875	0.055	-0.3245	No
24	HOXB9	1452317_at	11895	0.055	-0.3242	No
25	NEFL	1426255_at	13110	0.026	-0.3792	No
26	VLDLR	1417900_a_at 1434465_x_at 1435893_at 1438258_at 1442169_at 1451156_s_at	13320	0.020	-0.3884	No
27	ENPP2	1415894_at 1443224_at 1448136_at	13557	0.014	-0.3989	No
28	GOLGA4	1417674_s_at 1448803_at 1460213_at	13620	0.012	-0.4015	No
29	IPO7	1442511_at 1454955_at 1458165_at	13685	0.010	-0.4042	No
30	CASP4	1449591_at	13784	0.008	-0.4085	No
31	BAAT	1419001_at 1419002_s_at	14064	0.000	-0.4213	No
32	NID1	1416808_at 1441519_at	14319	-0.008	-0.4328	No
33	VPS35	1415783_at 1415784_at	14593	-0.017	-0.4449	No
34	RFC1	1418342_at 1449050_at 1451920_a_at	14628	-0.018	-0.4461	No
35	RABEP1	1421305_x_at 1426023_a_at 1427448_at 1443856_at 1444930_at 1459494_at	14909	-0.026	-0.4584	No
36	CEBPZ	1420497_a_at 1429962_at	15621	-0.053	-0.4898	No
37	ZFR	1419650_at 1442311_at 1443002_at 1443353_at 1443357_at 1444096_at 1449552_at 1458450_at	16112	-0.076	-0.5107	No
38	TLOC1	1432635_a_at 1433704_s_at 1439233_at 1444811_at 1454697_at 1455698_at	16391	-0.091	-0.5216	No
39	GSPT1	1426736_at 1426737_at 1435000_at 1446550_at 1452168_x_at 1455173_at	16459	-0.096	-0.5227	No
40	GSTA4	1416368_at	16843	-0.121	-0.5378	No
41	HFE	1422645_at 1450702_at	17099	-0.142	-0.5465	No
42	USP16	1430203_at 1431951_a_at	17110	-0.143	-0.5441	No
43	SLK	1419092_a_at 1425977_a_at 1433999_at 1441262_at 1443815_x_at 1449336_a_at	17186	-0.151	-0.5445	No
44	SMARCA3	1425996_a_at 1450889_at 1451901_at	17230	-0.155	-0.5433	No
45	UBE3A	1416680_at 1416681_at 1416682_at 1425206_a_at 1431224_at 1445727_at	17278	-0.159	-0.5422	No
46	ADD3	1423297_at 1423298_at 1426574_a_at 1447077_at 1456162_x_at	17322	-0.163	-0.5409	No
47	COL3A1	1427883_a_at 1427884_at 1442977_at	17798	-0.212	-0.5583	No
48	IMMT	1429533_at 1429534_a_at 1433470_a_at 1437126_at	17847	-0.217	-0.5561	No
49	ATF2	1426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at	18187	-0.264	-0.5663	No
50	TPP2	1421893_a_at 1421894_a_at 1430575_a_at 1430576_at 1438264_a_at	18846	-0.364	-0.5890	Yes
51	ITCH	1415769_at 1431316_at 1459332_at	18975	-0.390	-0.5869	Yes
52	NCOR1	1423200_at 1423201_at 1423202_a_at 1435914_at 1438276_at 1444760_at 1445230_at 1446574_at 1457007_at 1457938_at 1458103_at	19001	-0.395	-0.5801	Yes
53	TOP1	1423474_at 1438495_at 1457573_at 1459672_at	19100	-0.415	-0.5761	Yes
54	LAMC1	1423885_at 1423886_at	19234	-0.446	-0.5732	Yes
55	PNN	1423324_at 1423325_at	19262	-0.453	-0.5652	Yes
56	NDRG3	1417663_a_at 1417664_a_at	19354	-0.475	-0.5597	Yes
57	MAP2K4	1426233_at 1442679_at 1451982_at	19388	-0.482	-0.5515	Yes
58	MGA	1422646_at 1431232_a_at 1433012_at 1434746_at 1442356_at	19443	-0.494	-0.5439	Yes
59	YME1L1	1423360_at 1423361_at 1437822_at 1450954_at	19761	-0.583	-0.5466	Yes
60	GPT2	1434542_at 1438385_s_at 1439029_at 1455007_s_at	19909	-0.625	-0.5406	Yes
61	XRN2	1422842_at 1450777_at	20617	-0.931	-0.5541	Yes
62	SHOC2	1423129_at 1425845_a_at	20729	-1.016	-0.5386	Yes
63	BAZ2B	1435240_at 1440984_at 1441556_at 1442704_at 1442971_at 1445048_at 1448007_at 1458077_at	20739	-1.021	-0.5183	Yes
64	MPO	1415960_at	20766	-1.044	-0.4983	Yes
65	ZNF148	1418381_at 1427730_a_at 1436217_at 1441612_at 1441701_at 1449068_at 1449069_at 1455483_at	20829	-1.085	-0.4791	Yes
66	EIF3S10	1416659_at 1416660_at 1416661_at 1448425_at	20895	-1.143	-0.4589	Yes
67	KLF9	1422264_s_at 1428288_at 1428289_at 1436763_a_at 1436952_at 1452723_at 1456341_a_at	21102	-1.360	-0.4408	Yes
68	ANGEL2	1415731_at 1431606_a_at 1437050_s_at 1448360_s_at 1453741_x_at 1455362_at	21247	-1.555	-0.4158	Yes
69	CLK1	1426124_a_at	21489	-2.010	-0.3860	Yes
70	SMAD1	1416081_at 1448208_at 1459843_s_at	21506	-2.046	-0.3453	Yes
71	NFE2L2	1416543_at 1457117_at	21541	-2.121	-0.3038	Yes
72	EPN2	1427225_at 1427226_at 1433915_s_at 1440175_at 1447599_x_at 1454303_at 1454304_at	21558	-2.168	-0.2606	Yes
73	SEPP1	1452141_a_at	21586	-2.233	-0.2165	Yes
74	NKTR	1423248_at 1423249_at 1437660_at 1440804_at 1458676_at	21610	-2.316	-0.1706	Yes
75	BIRC3	1421392_a_at 1425223_at	21874	-3.643	-0.1087	Yes
76	TCF12	1421908_a_at 1427670_a_at 1438762_at 1439209_at 1439619_at 1443012_at 1444620_at 1445093_at 1445133_at 1457524_at 1458337_at	21929	-5.496	0.0003	Yes