Details for gene set REACTOME_DNA

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	SCID
GeneSet	REACTOME_DNA_REPLICATION
Enrichment Score (ES)	0.67576295
Normalized Enrichment Score (NES)	1.9361427
Nominal p-value	0.0
FDR q-value	0.0024210946
FWER p-Value	0.013

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PSMA1	1415695_at 1436769_at 1436770_x_at 1458292_at	8	6.245	0.1070	Yes
2	POLE	1441854_at 1448650_a_at	38	4.383	0.1810	Yes
3	POLA2	1425794_at 1448369_at 1456713_at	144	3.131	0.2300	Yes
4	FEN1	1421731_a_at 1436454_x_at	196	2.841	0.2765	Yes
5	MCM10	1433407_at 1433408_a_at 1454244_at	220	2.689	0.3217	Yes
6	MCM6	1416251_at 1438852_x_at 1447756_x_at	280	2.372	0.3597	Yes
7	MCM5	1415945_at 1436808_x_at	521	1.778	0.3793	Yes
8	GMNN	1417506_at	766	1.376	0.3918	Yes
9	RFC4	1424321_at 1438161_s_at	788	1.350	0.4141	Yes
10	LIG1	1416641_at	921	1.215	0.4289	Yes
11	PSMB9	1450696_at	978	1.164	0.4464	Yes
12	PSMD7	1432820_at 1451056_at 1454368_at	999	1.147	0.4652	Yes
13	RFC3	1423700_at 1432538_a_at	1086	1.072	0.4797	Yes
14	RFC5	1452917_at	1102	1.062	0.4972	Yes
15	POLE2	1427094_at 1431440_at	1190	1.000	0.5104	Yes
16	POLD1	1448187_at 1456055_x_at	1223	0.980	0.5258	Yes
17	RPA2	1416433_at 1454011_a_at	1307	0.930	0.5380	Yes
18	CDC45L	1416575_at 1457838_at	1397	0.889	0.5492	Yes
19	PSMB3	1417052_at	1556	0.815	0.5560	Yes
20	PSMA5	1424681_a_at 1434356_a_at	1570	0.805	0.5692	Yes
21	POLD2	1448277_at	1620	0.785	0.5805	Yes
22	ORC1L	1422663_at 1443172_at	1723	0.732	0.5884	Yes
23	POLD3	1426838_at 1426839_at 1443733_x_at 1459647_at	1778	0.711	0.5982	Yes
24	PSMC1	1416005_at	1843	0.691	0.6071	Yes
25	PSMA7	1423567_a_at 1423568_at	1912	0.664	0.6154	Yes
26	MCM2	1434079_s_at 1448777_at	1953	0.651	0.6248	Yes
27	PSMC4	1416290_a_at 1416291_at	1988	0.642	0.6342	Yes
28	PSMB10	1448632_at	2021	0.629	0.6436	Yes
29	PSMB6	1448822_at	2044	0.622	0.6533	Yes
30	PSMA4	1460339_at	2170	0.587	0.6576	Yes
31	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	2279	0.560	0.6623	Yes
32	PSMB5	1415676_a_at	2348	0.542	0.6685	Yes
33	PSMB1	1420052_x_at 1420053_at 1448166_a_at	2470	0.514	0.6718	Yes
34	PSMA2	1448206_at	2629	0.483	0.6729	Yes
35	E2F2	1455790_at 1458574_at	2741	0.462	0.6758	Yes
36	RPA1	1423293_at 1437309_a_at 1441240_at	2905	0.433	0.6757	No
37	PSME3	1418078_at 1418079_at 1438509_at	3225	0.385	0.6678	No
38	PSMC3	1416282_at	3317	0.373	0.6700	No
39	PSMD3	1448479_at	3472	0.355	0.6691	No
40	PSMC5	1415740_at	3784	0.326	0.6605	No
41	PSMD10	1436559_a_at	4168	0.296	0.6480	No
42	PSMD14	1421751_a_at 1446521_at 1457765_at 1459734_at	4174	0.296	0.6529	No
43	PSMD2	1415831_at	4564	0.273	0.6398	No
44	PSMD8	1423296_at	4842	0.259	0.6316	No
45	PSMD9	1423386_at 1423387_at 1444321_at 1447670_at	5504	0.231	0.6053	No
46	CDK2	1416873_a_at 1447617_at	5549	0.229	0.6073	No
47	MCM4	1416214_at 1436708_x_at	6049	0.210	0.5880	No
48	PSMD5	1423234_at	6087	0.209	0.5899	No
49	PSME1	1417056_at	6301	0.201	0.5837	No
50	POLA1	1419397_at 1456285_at 1459319_at 1459963_at	6944	0.180	0.5574	No
51	PCNA	1417947_at	7044	0.177	0.5559	No
52	PSMA3	1448442_a_at	7498	0.164	0.5380	No
53	ORC5L	1415830_at 1441601_at	8593	0.134	0.4903	No
54	CDC7	1426002_a_at 1426021_a_at	8770	0.130	0.4845	No
55	PSMB4	1438984_x_at 1451205_at	10735	0.083	0.3961	No
56	PSMB2	1444377_at 1448262_at 1459641_at	11183	0.073	0.3769	No
57	ORC4L	1423336_at 1423337_at 1431172_at 1453804_a_at	12930	0.031	0.2976	No
58	RPA3	1448938_at	14354	-0.009	0.2326	No
59	RFC1	1418342_at 1449050_at 1451920_a_at	14628	-0.018	0.2205	No
60	PRIM1	1418369_at 1444544_at 1449061_a_at	15709	-0.056	0.1720	No
61	PSMD11	1429370_a_at 1432726_at 1456059_at 1456104_at	15836	-0.063	0.1674	No
62	PSMD12	1448492_a_at	16646	-0.108	0.1322	No
63	PSMC6	1417771_a_at	16707	-0.112	0.1314	No
64	PSMA6	1416506_at 1435316_at 1435317_x_at 1437144_x_at	17094	-0.142	0.1162	No
65	RB1	1417850_at 1441494_at 1444400_at 1444454_at 1457447_at	18543	-0.312	0.0553	No
66	PSMD6	1423696_a_at 1423697_at	18665	-0.331	0.0555	No
67	ORC2L	1418225_at 1418226_at 1418227_at	19158	-0.431	0.0404	No
68	PSMD4	1418874_a_at 1425859_a_at 1451725_a_at	20420	-0.832	-0.0030	No
69	RFC2	1417503_at 1457638_x_at 1457669_x_at	20627	-0.935	0.0037	No
70	PSMC2	1426611_at 1435859_x_at 1443307_at	21028	-1.281	0.0074	No
71	MCM3	1420029_at 1426653_at	21483	-1.983	0.0207	No