Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_01_SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus.phenotype_SCID_versus_ATM_plus.cls #SCID_versus_ATM_plus_repos
Phenotype	phenotype_SCID_versus_ATM_plus.cls#SCID_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	NETPATH_BCR
Enrichment Score (ES)	-0.49631324
Normalized Enrichment Score (NES)	-1.5563899
Nominal p-value	0.0019646366
FDR q-value	0.3496294
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PLCG1	1435149_at 1450360_at	28	4.786	0.0437	No
2	CYCS	1422484_at 1445484_at	164	3.037	0.0661	No
3	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	182	2.933	0.0929	No
4	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	209	2.769	0.1177	No
5	CSK	1423518_at 1439744_at	289	2.344	0.1361	No
6	FYN	1417558_at 1441647_at 1448765_at	360	2.138	0.1530	No
7	CD22	1419768_at 1419769_at 1445222_at	571	1.679	0.1592	No
8	PTPN11	1421196_at 1427699_a_at 1451225_at	732	1.415	0.1651	No
9	PTPRC	1422124_a_at 1440165_at	795	1.337	0.1748	No
10	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	1018	1.129	0.1753	No
11	CDK6	1435338_at 1440040_at 1455287_at 1460291_at	1148	1.022	0.1790	No
12	CDK4	1422441_x_at	1669	0.757	0.1623	No
13	RAP2A	1421574_at 1426965_at 1440473_at	1793	0.707	0.1633	No
14	RPS6KA1	1416896_at	1849	0.689	0.1672	No
15	CD72	1426112_a_at	1975	0.646	0.1676	No
16	CASP9	1426125_a_at 1437537_at 1457816_at	2014	0.632	0.1718	No
17	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	2079	0.612	0.1746	No
18	PIK3R2	1418463_at	2146	0.593	0.1771	No
19	BAX	1416837_at	2180	0.583	0.1811	No
20	MAPK8	1420931_at 1420932_at 1437045_at 1440856_at 1457936_at	2363	0.538	0.1778	No
21	SHC1	1422853_at 1422854_at	2961	0.426	0.1545	No
22	CCNE1	1416492_at 1441910_x_at	3304	0.375	0.1423	No
23	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	3406	0.363	0.1411	No
24	PRKCE	1437860_at 1437861_s_at 1442609_at 1444649_at 1449956_at 1452878_at	4192	0.295	0.1079	No
25	HCLS1	1418842_at	4553	0.273	0.0940	No
26	RPS6	1453466_at	4629	0.270	0.0931	No
27	LIME1	1416869_x_at 1437589_x_at 1448500_a_at	5043	0.251	0.0765	No
28	CD81	1416330_at	5493	0.231	0.0581	No
29	CDK2	1416873_a_at 1447617_at	5549	0.229	0.0577	No
30	RPS6KB1	1428849_at 1446376_at 1454956_at 1457562_at 1459951_at 1460705_at	5573	0.228	0.0588	No
31	MAPKAPK2	1426648_at	6162	0.206	0.0338	No
32	PIP5K1C	1450228_a_at	7133	0.175	-0.0090	No
33	BTK	1422755_at	7914	0.151	-0.0434	No
34	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	7984	0.149	-0.0451	No
35	ELK1	1421896_at 1421897_at 1446390_at	8178	0.145	-0.0526	No
36	ATP2B4	1445701_at	8375	0.140	-0.0603	No
37	CDK7	1424257_at 1439511_at 1451741_a_at 1458987_at	8539	0.136	-0.0665	No
38	MAPK4	1435367_at	9165	0.120	-0.0940	No
39	LAT2	1426169_a_at	9991	0.100	-0.1309	No
40	RASGRP3	1438030_at 1438031_at	11021	0.076	-0.1773	No
41	PRKD1	1422673_at	11259	0.071	-0.1875	No
42	DOK3	1418096_at	11402	0.068	-0.1934	No
43	BLNK	1451780_at	11936	0.054	-0.2173	No
44	DOK1	1417790_at	12230	0.047	-0.2303	No
45	PTPN18	1419125_at 1444894_at	12266	0.046	-0.2315	No
46	CR2	1425289_a_at	12566	0.039	-0.2448	No
47	ZAP70	1422701_at 1439749_at 1440178_x_at	12867	0.033	-0.2583	No
48	PLEKHA1	1417965_at 1443111_at	13003	0.029	-0.2642	No
49	PIK3AP1	1421285_at 1429831_at	13081	0.027	-0.2674	No
50	BCAR1	1439388_s_at 1450622_at	13601	0.012	-0.2911	No
51	MAP3K7	1419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at	13897	0.005	-0.3046	No
52	GSK3A	1435638_at	14111	-0.002	-0.3144	No
53	REL	1420710_at	14232	-0.005	-0.3198	No
54	JUN	1417409_at 1448694_at	14497	-0.014	-0.3318	No
55	CD19	1450570_a_at	14678	-0.020	-0.3398	No
56	MAPK3	1427060_at	14783	-0.022	-0.3444	No
57	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	15694	-0.056	-0.3856	No
58	IKBKG	1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at	15968	-0.069	-0.3975	No
59	NFATC1	1417621_at 1425761_a_at 1428479_at 1447084_at 1447085_s_at	15972	-0.069	-0.3969	No
60	BLK	1422775_at	16285	-0.085	-0.4105	No
61	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	16317	-0.086	-0.4111	No
62	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	16497	-0.099	-0.4183	No
63	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	16598	-0.105	-0.4219	No
64	FCGR2B	1435476_a_at 1435477_s_at 1447622_at 1451941_a_at 1455332_x_at	16627	-0.107	-0.4222	No
65	GAB1	1417693_a_at 1417694_at 1448814_at	16677	-0.110	-0.4234	No
66	BCL2L11	1426334_a_at 1435448_at 1435449_at 1456005_a_at 1456006_at 1459794_at	16782	-0.118	-0.4271	No
67	RAPGEF1	1421146_at 1427006_at 1441386_at	16931	-0.128	-0.4327	No
68	DAPP1	1421936_at 1421937_at 1447337_at	17236	-0.155	-0.4451	No
69	PRKCD	1422847_a_at 1442256_at	17365	-0.167	-0.4495	No
70	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	17549	-0.185	-0.4561	No
71	SLA2	1437504_at 1451492_at	18091	-0.251	-0.4785	No
72	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	18093	-0.251	-0.4762	No
73	ATF2	1426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at	18187	-0.264	-0.4780	No
74	HCK	1446553_at 1449455_at	18436	-0.299	-0.4866	No
75	RB1	1417850_at 1441494_at 1444400_at 1444454_at 1457447_at	18543	-0.312	-0.4885	No
76	CD79A	1418830_at	18548	-0.313	-0.4857	No
77	GTF2I	1431675_a_at 1431676_x_at	18563	-0.316	-0.4834	No
78	WAS	1419631_at	18685	-0.334	-0.4858	No
79	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	18692	-0.335	-0.4829	No
80	CBLB	1437304_at 1455082_at 1458469_at	18786	-0.353	-0.4839	No
81	ITPR2	1421678_at 1424833_at 1424834_s_at 1427287_s_at 1427693_at 1444418_at 1444551_at 1447328_at	18943	-0.384	-0.4874	No
82	NCK1	1421487_a_at 1424543_at 1447271_at	18972	-0.389	-0.4851	No
83	GRB2	1418508_a_at 1449111_a_at	18989	-0.393	-0.4821	No
84	VAV1	1422932_a_at	19214	-0.442	-0.4882	No
85	SOS1	1421884_at 1421885_at 1421886_at	19240	-0.448	-0.4852	No
86	RELA	1419536_a_at	19403	-0.485	-0.4880	No
87	CCND3	1415907_at 1437584_at 1444323_at 1446567_at 1447434_at 1457549_at	19489	-0.507	-0.4872	No
88	CBL	1434829_at 1446608_at 1450457_at 1455886_at	19555	-0.527	-0.4852	No
89	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	19644	-0.549	-0.4841	No
90	SOS2	1452281_at	19678	-0.557	-0.4803	No
91	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	19798	-0.593	-0.4802	No
92	PTPN6	1456694_x_at 1460188_at	20040	-0.672	-0.4849	No
93	ACTR3	1426392_a_at 1434968_a_at 1452051_at	20289	-0.777	-0.4890	Yes
94	SH3BP2	1448328_at	20365	-0.805	-0.4849	Yes
95	PPP3CA	1426401_at 1438478_a_at 1440051_at 1452056_s_at 1458495_at	20580	-0.908	-0.4862	Yes
96	LCP2	1418641_at 1418642_at	20596	-0.919	-0.4782	Yes
97	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	20621	-0.933	-0.4705	Yes
98	CASP7	1426062_a_at 1448659_at	20638	-0.942	-0.4624	Yes
99	CHUK	1417091_at 1428210_s_at 1451383_a_at	20646	-0.945	-0.4539	Yes
100	CCNA2	1417910_at 1417911_at	20779	-1.050	-0.4500	Yes
101	BCL2	1422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at	20911	-1.157	-0.4452	Yes
102	HDAC5	1415743_at	21007	-1.250	-0.4378	Yes
103	CD79B	1417640_at	21072	-1.317	-0.4283	Yes
104	PDK2	1448825_at	21182	-1.471	-0.4195	Yes
105	ACTR2	1441660_at 1452587_at	21217	-1.518	-0.4068	Yes
106	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	21220	-1.521	-0.3926	Yes
107	CARD11	1430257_at 1435996_at	21337	-1.678	-0.3821	Yes
108	PRKCQ	1426044_a_at	21352	-1.700	-0.3668	Yes
109	PPP3R1	1421786_at 1433591_at 1450368_a_at	21405	-1.812	-0.3521	Yes
110	PDPK1	1415729_at 1416501_at 1459775_at 1459776_x_at	21531	-2.098	-0.3381	Yes
111	NFATC3	1419976_s_at 1452497_a_at	21574	-2.204	-0.3193	Yes
112	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	21592	-2.242	-0.2990	Yes
113	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	21649	-2.458	-0.2785	Yes
114	IKBKB	1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at	21683	-2.583	-0.2557	Yes
115	BCL6	1421818_at 1450381_a_at	21747	-2.870	-0.2316	Yes
116	GSK3B	1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at	21817	-3.254	-0.2042	Yes
117	CCND2	1416122_at 1416123_at 1416124_at 1430127_a_at 1434745_at 1448229_s_at 1455956_x_at	21828	-3.314	-0.1735	Yes
118	VAV2	1421272_at 1435065_x_at 1435244_at 1458758_at	21875	-3.671	-0.1411	Yes
119	TEC	1441524_at 1460204_at	21901	-4.227	-0.1025	Yes
120	CD5	1418353_at	21918	-5.017	-0.0561	Yes
121	PTK2B	1434653_at 1442437_at 1442927_at	21933	-6.050	0.0001	Yes