Details for gene set V$NKX62

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_SCID.phenotype_ATM_minus_versus_SCID.cls #ATM_minus_versus_SCID
Phenotype	phenotype_ATM_minus_versus_SCID.cls#ATM_minus_versus_SCID
Upregulated in class	SCID
GeneSet	V$NKX62_Q2
Enrichment Score (ES)	-0.45406854
Normalized Enrichment Score (NES)	-1.4272428
Nominal p-value	0.008032128
FDR q-value	0.3602539
FWER p-Value	0.994

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	XPO1	1418442_at 1418443_at 1448070_at	57	3.357	0.0452	No
2	SERTAD4	1454877_at	245	2.089	0.0664	No
3	PRKAG1	1417690_at 1433533_x_at 1457803_at	326	1.803	0.0884	No
4	DACH1	1420694_a_at 1420695_at 1433743_at 1447174_at 1459381_at	506	1.433	0.1006	No
5	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	555	1.348	0.1176	No
6	RAB6A	1447776_x_at 1448304_a_at 1448305_at	569	1.331	0.1360	No
7	CYFIP2	1428347_at 1442167_at 1444351_at 1449273_at	668	1.191	0.1485	No
8	AIM1L	1437813_at	677	1.176	0.1649	No
9	CYCS	1422484_at 1445484_at	679	1.174	0.1816	No
10	IER3	1419647_a_at	1328	0.678	0.1614	No
11	FARP1	1445200_at 1452280_at 1459799_at	1621	0.577	0.1563	No
12	ZFPM2	1419012_at 1444803_at 1447020_at 1449314_at	1754	0.538	0.1579	No
13	STX7	1418436_at	1779	0.532	0.1643	No
14	AP1G1	1423388_at 1434081_at 1460658_at 1460712_s_at	2098	0.444	0.1560	No
15	PHF5A	1424170_at	2129	0.438	0.1609	No
16	BCL9L	1419180_at 1438806_at 1443700_at 1444855_at	2594	0.353	0.1446	No
17	ETV3	1418635_at 1418636_at 1445997_at 1456358_at	3000	0.299	0.1303	No
18	CYLD	1429617_at 1429618_at 1445213_at	3114	0.286	0.1292	No
19	STAT3	1424272_at 1426587_a_at 1459961_a_at 1460700_at	3297	0.267	0.1246	No
20	SSH2	1456153_at	3439	0.253	0.1217	No
21	ITGA7	1418393_a_at	3440	0.253	0.1253	No
22	NEUROD2	1444362_at	3570	0.242	0.1229	No
23	TNFSF10	1420412_at 1439680_at 1459913_at	3591	0.240	0.1254	No
24	MARCKS	1415971_at 1415972_at 1430311_at 1437034_x_at 1456028_x_at	3689	0.234	0.1242	No
25	MAB21L1	1421369_a_at 1424679_at 1440860_at 1457290_at	3891	0.219	0.1181	No
26	ATOH1	1449822_at	3918	0.217	0.1200	No
27	PDZRN4	1456512_at	4417	0.186	0.0998	No
28	PRKAA1	1437539_at	4579	0.178	0.0949	No
29	NPAS2	1421036_at 1421037_at	4594	0.177	0.0968	No
30	IRX4	1419539_at	4663	0.174	0.0962	No
31	BMX	1422084_at	4691	0.172	0.0974	No
32	FOXB1	1420705_at	4709	0.171	0.0990	No
33	BACE2	1416673_at 1435581_at 1437846_x_at 1438645_x_at	4747	0.170	0.0998	No
34	CACNA2D3	1419225_at	5020	0.157	0.0895	No
35	BAMBI	1423753_at	5109	0.153	0.0876	No
36	SLIT3	1427086_at 1452296_at	5117	0.153	0.0895	No
37	MITF	1422025_at 1455214_at	5203	0.150	0.0877	No
38	SOX15	1452017_at	5276	0.147	0.0865	No
39	PRIMA1	1425304_s_at	5456	0.140	0.0803	No
40	ARTN	1432032_a_at	5651	0.133	0.0733	No
41	FABP4	1417023_a_at 1424155_at 1425809_at 1451263_a_at	5742	0.130	0.0710	No
42	ZIC4	1421539_at 1456417_at	6275	0.113	0.0481	No
43	ADAM11	1450248_at	6282	0.112	0.0495	No
44	IRX6	1427383_at	6421	0.109	0.0447	No
45	GREM1	1425357_a_at	6483	0.106	0.0434	No
46	KCNS1	1421518_at	6578	0.104	0.0405	No
47	PTHR1	1417092_at	6772	0.098	0.0331	No
48	NFIX	1423493_a_at 1436363_a_at 1436364_x_at 1451443_at 1459909_at	6837	0.096	0.0315	No
49	GSH1	1450002_at	7018	0.092	0.0245	No
50	A2BP1	1418314_a_at 1438217_at 1447735_x_at 1455358_at 1456921_at	7029	0.091	0.0254	No
51	ERG	1425370_a_at 1440244_at	7200	0.087	0.0188	No
52	LRRTM4	1437214_at 1455937_at	7231	0.086	0.0187	No
53	WNT3A	1422093_at 1446764_at	7253	0.085	0.0189	No
54	RHOBTB1	1429206_at 1429656_at	7383	0.082	0.0142	No
55	KCNN3	1421632_at 1459308_at	7487	0.079	0.0106	No
56	IGSF4	1417376_a_at 1417377_at 1417378_at 1431611_a_at	7542	0.078	0.0092	No
57	LRFN5	1441502_at 1454687_at	7544	0.078	0.0102	No
58	IGSF4D	1435145_at 1435146_s_at 1435147_x_at 1436743_at 1440412_at 1444664_at 1459761_x_at	7591	0.077	0.0092	No
59	PAMCI	1427942_at	7661	0.075	0.0071	No
60	SLC37A4	1417042_at	7896	0.070	-0.0026	No
61	PDGFRA	1421916_at 1421917_at 1438946_at	8143	0.064	-0.0130	No
62	PGR	1421444_at 1439699_at 1455772_at	8172	0.064	-0.0134	No
63	SOX14	1427609_at	8174	0.064	-0.0125	No
64	FLOT1	1448559_at	8277	0.061	-0.0163	No
65	FLRT3	1429310_at 1453102_at	8602	0.053	-0.0305	No
66	TCEAL1	1424634_at	8906	0.046	-0.0437	No
67	ANGPT1	1421441_at 1438936_s_at 1438937_x_at 1439066_at 1446656_at 1450717_at 1457381_at	9034	0.043	-0.0489	No
68	PTF1A	1419424_at	9072	0.043	-0.0500	No
69	HOXC6	1427361_at 1427362_x_at 1427454_at	9075	0.043	-0.0495	No
70	SCRT2	1440930_a_at 1440931_at 1446986_at 1457310_x_at	9177	0.040	-0.0536	No
71	STMN2	1423280_at 1423281_at	9350	0.037	-0.0610	No
72	TBX5	1425694_at 1425695_at	9578	0.032	-0.0709	No
73	C1QTNF3	1422606_at	9752	0.028	-0.0785	No
74	HOXA11	1420414_at	10190	0.020	-0.0983	No
75	IRAK1	1448668_a_at 1460649_at	10222	0.020	-0.0994	No
76	SLN	1420883_at 1420884_at	10292	0.018	-0.1023	No
77	TWIST1	1418733_at	10365	0.017	-0.1054	No
78	PELI2	1419006_s_at 1436966_at 1437181_at	10518	0.014	-0.1122	No
79	FLRT1	1443143_at	10560	0.013	-0.1139	No
80	LRRTM3	1434759_at 1434760_at 1434761_at 1440112_at 1444477_at	10581	0.013	-0.1146	No
81	UNC5B	1435110_at 1453269_at	10597	0.012	-0.1151	No
82	BARHL1	1418811_at 1418812_a_at	10676	0.011	-0.1186	No
83	MYO1B	1427450_x_at 1441210_at 1447364_x_at 1448989_a_at 1448990_a_at 1458007_at 1459679_s_at	10957	0.005	-0.1313	No
84	ETV4	1423232_at 1443381_at	11014	0.004	-0.1339	No
85	OTX2	1425926_a_at	11024	0.003	-0.1342	No
86	CDKN2C	1416868_at 1439164_at	11227	-0.000	-0.1435	No
87	FIGN	1450268_at	11275	-0.002	-0.1456	No
88	OGG1	1430078_a_at 1448815_at	11293	-0.002	-0.1464	No
89	SLCO5A1	1439588_at 1440874_at	11305	-0.003	-0.1469	No
90	MYT1	1422773_at 1439365_at	11463	-0.006	-0.1540	No
91	MYOG	1419391_at	11468	-0.006	-0.1541	No
92	AQP6	1420035_at 1441978_at 1447974_s_at	11498	-0.007	-0.1553	No
93	HOXC4	1422870_at	11549	-0.008	-0.1575	No
94	TGM3	1421355_at 1440150_at	11699	-0.011	-0.1642	No
95	SIX3	1426637_a_at 1426638_at	11735	-0.012	-0.1657	No
96	TITF1	1422346_at	11840	-0.014	-0.1702	No
97	FILIP1	1436650_at 1444075_at	11988	-0.017	-0.1768	No
98	ETS1	1422027_a_at 1422028_a_at 1426725_s_at 1452163_at	12009	-0.017	-0.1774	No
99	SHOX2	1420559_a_at 1438042_at	12033	-0.018	-0.1782	No
100	PAK1IP1	1423766_at 1430875_a_at	12180	-0.021	-0.1846	No
101	DIXDC1	1425256_a_at 1435207_at 1443957_at 1444395_at	12267	-0.023	-0.1883	No
102	PNMA1	1429224_at	12458	-0.027	-0.1966	No
103	ATP2A3	1421129_a_at 1450124_a_at	12654	-0.031	-0.2051	No
104	HOXA10	1431475_a_at 1446408_at	12703	-0.032	-0.2069	No
105	SMARCA2	1430526_a_at 1439930_at 1452333_at	12704	-0.032	-0.2064	No
106	JPH3	1418161_at 1443724_at	12754	-0.034	-0.2082	No
107	CGN	1430329_at 1435155_at	12950	-0.038	-0.2166	No
108	BNC2	1438861_at 1440593_at 1459132_at	13142	-0.042	-0.2248	No
109	PRDX5	1416381_a_at	13254	-0.045	-0.2293	No
110	DTNA	1419223_a_at 1425292_at 1426066_a_at 1427588_a_at 1429768_at 1447280_at 1456069_at 1458908_at	13298	-0.045	-0.2306	No
111	BCL11A	1419406_a_at 1426552_a_at 1446293_at 1447334_at 1447335_x_at 1453814_at 1456632_at	13829	-0.058	-0.2541	No
112	NKX2-2	1421112_at	13837	-0.058	-0.2536	No
113	SLITRK1	1428089_at	13875	-0.059	-0.2545	No
114	DNAJB7	1450991_at	14060	-0.063	-0.2620	No
115	HESX1	1420604_at	14151	-0.066	-0.2652	No
116	NOL4	1430189_at 1441447_at 1456387_at	14686	-0.080	-0.2886	No
117	POLR2C	1416341_at	14947	-0.087	-0.2993	No
118	BAD	1416582_a_at 1416583_at	15444	-0.101	-0.3206	No
119	BTBD3	1425660_at 1433868_at 1442748_at	15472	-0.102	-0.3204	No
120	PRDM1	1420425_at 1444997_at	15531	-0.104	-0.3216	No
121	TBX6	1449868_at	15787	-0.112	-0.3317	No
122	LMO3	1455754_at	15878	-0.115	-0.3342	No
123	AP1S2	1437998_at 1447903_x_at 1452657_at 1456252_x_at 1460036_at	15908	-0.116	-0.3339	No
124	CALD1	1424768_at 1424769_s_at 1424770_at 1433146_at 1433147_at 1458057_at	16059	-0.121	-0.3391	No
125	DAB1	1421100_a_at 1427307_a_at 1427308_at 1435577_at 1435578_s_at	16137	-0.123	-0.3409	No
126	NHLH2	1436888_at	16164	-0.124	-0.3403	No
127	SYNGR4	1418875_at	16203	-0.126	-0.3402	No
128	EYA1	1421727_at 1443117_at 1457424_at	16261	-0.128	-0.3410	No
129	GAL3ST4	1435606_at	16423	-0.133	-0.3465	No
130	MYST4	1423508_at 1446189_at 1447258_at 1447758_x_at	16531	-0.137	-0.3495	No
131	LUZP1	1416469_at 1448352_at	16692	-0.144	-0.3548	No
132	ACTR10	1417157_at	16968	-0.155	-0.3652	No
133	SLC7A9	1448783_at	17129	-0.162	-0.3703	No
134	DSCR1	1416600_a_at 1416601_a_at	17441	-0.178	-0.3820	No
135	IRS1	1423104_at	17881	-0.207	-0.3992	No
136	PIK3R3	1445097_at 1447068_at 1456482_at	17965	-0.212	-0.4000	No
137	RTN4RL1	1436868_at 1455664_at	18005	-0.215	-0.3988	No
138	ZIC1	1423477_at 1439627_at	18082	-0.221	-0.3991	No
139	COL11A2	1423578_at	18151	-0.227	-0.3990	No
140	CCNG1	1420827_a_at 1450016_at 1450017_at	18909	-0.293	-0.4296	No
141	LGALS12	1417686_at 1417687_at	19066	-0.312	-0.4323	No
142	HOXA4	1420226_x_at 1427354_at	19533	-0.380	-0.4483	No
143	UNC13D	1428992_at	19659	-0.400	-0.4484	Yes
144	ELMO1	1424523_at 1446610_at 1450208_a_at	19716	-0.409	-0.4451	Yes
145	EMID1	1442144_at 1449581_at	19821	-0.429	-0.4438	Yes
146	TLE3	1419654_at 1419655_at 1449554_at 1458512_at	19828	-0.431	-0.4379	Yes
147	FGF13	1418497_at 1418498_at	19833	-0.432	-0.4319	Yes
148	CHD2	1444246_at 1445843_at	19913	-0.449	-0.4292	Yes
149	CAP1	1417461_at 1417462_at	20194	-0.519	-0.4346	Yes
150	CDC42EP3	1422642_at 1450700_at	20302	-0.553	-0.4317	Yes
151	ITPR3	1417297_at	20439	-0.595	-0.4294	Yes
152	CHCHD7	1440158_x_at 1444318_at 1446844_at 1454640_at	20620	-0.661	-0.4283	Yes
153	SDPR	1416778_at 1416779_at 1443832_s_at	20719	-0.710	-0.4227	Yes
154	NFIL3	1418932_at	20737	-0.724	-0.4131	Yes
155	NLGN2	1455143_at 1460013_at	20745	-0.728	-0.4031	Yes
156	PLAG1	1421745_at 1443943_at	20954	-0.857	-0.4004	Yes
157	CACNB3	1448656_at	21008	-0.896	-0.3901	Yes
158	SLC20A1	1438824_at 1446441_at 1448568_a_at	21196	-1.076	-0.3834	Yes
159	JARID1C	1426497_at 1426498_at 1441449_at 1441450_s_at 1444157_a_at 1444158_at 1457930_at	21295	-1.184	-0.3710	Yes
160	UTX	1427235_at 1427672_a_at 1440524_at 1441201_at 1445198_at 1446234_at 1446278_at	21341	-1.267	-0.3550	Yes
161	DLX1	1449470_at	21371	-1.298	-0.3378	Yes
162	CLDN4	1418283_at	21416	-1.371	-0.3203	Yes
163	GNAI1	1427510_at 1434440_at 1454959_s_at	21426	-1.386	-0.3010	Yes
164	TGFB3	1417455_at	21503	-1.541	-0.2825	Yes
165	MEF2C	1421027_a_at 1421028_a_at 1424852_at 1439946_at 1445420_at 1446484_at 1451506_at 1451507_at 1458551_at	21658	-1.921	-0.2622	Yes
166	STK38	1416252_at 1431303_at 1439938_at	21695	-2.083	-0.2342	Yes
167	LTBP3	1418049_at 1437833_at 1438312_s_at 1456189_x_at	21698	-2.090	-0.2045	Yes
168	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	21702	-2.099	-0.1747	Yes
169	ACO2	1436934_s_at 1442102_at 1451002_at	21799	-2.661	-0.1412	Yes
170	IL5	1425546_a_at 1442049_at 1450550_at	21895	-4.125	-0.0868	Yes
171	ATP2A2	1416551_at 1427250_at 1427251_at 1437797_at 1443551_at 1452363_a_at 1458927_at	21930	-6.219	0.0003	Yes