Details for gene set RNA_PROCESSING[GSEA]

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	RNA_PROCESSING
Enrichment Score (ES)	0.5387197
Normalized Enrichment Score (NES)	1.7426705
Nominal p-value	0.0
FDR q-value	0.18948118
FWER p-Value	0.571

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	HNRPD	1425142_a_at 1446083_at	33	4.652	0.0357	Yes
2	LSM6	1431054_at 1437108_at 1437109_s_at 1455926_at	69	3.895	0.0652	Yes
3	SNRPD3	1422884_at 1422885_at 1449629_s_at	70	3.889	0.0963	Yes
4	NOLC1	1428869_at 1428870_at 1450087_a_at	110	3.462	0.1222	Yes
5	NSUN2	1423850_at 1453759_at	175	3.066	0.1438	Yes
6	BCAS2	1418234_s_at 1437262_x_at 1458219_at	203	2.929	0.1660	Yes
7	DDX39	1423643_at 1438168_x_at 1438287_x_at 1451065_a_at 1455814_x_at	254	2.682	0.1852	Yes
8	NOLA2	1416605_at 1416606_s_at	322	2.444	0.2017	Yes
9	TRNT1	1425561_at 1425562_s_at	347	2.374	0.2195	Yes
10	METTL1	1419122_at 1439155_at 1447683_x_at	371	2.310	0.2370	Yes
11	IGF2BP3	1422610_s_at 1422611_s_at 1433731_at 1433732_x_at 1436145_at 1450687_at 1453957_a_at 1459016_at	377	2.290	0.2551	Yes
12	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	428	2.140	0.2699	Yes
13	DDX54	1438853_x_at 1447882_x_at 1460396_at	500	1.976	0.2824	Yes
14	HNRPDL	1420093_s_at 1420094_at 1424251_a_at 1424252_at 1428224_at 1428225_s_at 1449039_a_at 1456698_s_at	554	1.864	0.2949	Yes
15	NCBP2	1423045_at 1423046_s_at 1450847_at	595	1.786	0.3074	Yes
16	GRSF1	1433457_s_at 1433824_x_at 1437838_x_at 1439366_at	619	1.748	0.3203	Yes
17	LSM1	1423873_at 1441452_at	648	1.707	0.3326	Yes
18	EXOSC2	1426630_at 1446994_at	787	1.531	0.3386	Yes
19	SNRPA1	1417351_a_at 1417352_s_at 1417353_x_at	882	1.425	0.3456	Yes
20	CPSF6	1428231_at 1428232_at 1428233_at 1428234_at 1437372_at 1439188_at 1447381_at 1459687_x_at	911	1.399	0.3556	Yes
21	FBL	1416684_at 1416685_s_at	1059	1.245	0.3588	Yes
22	SARS	1426257_a_at 1452000_s_at	1078	1.233	0.3678	Yes
23	SNRPD1	1416336_s_at	1086	1.226	0.3773	Yes
24	NOL5A	1426533_at 1455035_s_at	1108	1.209	0.3860	Yes
25	PHF5A	1424170_at	1109	1.206	0.3956	Yes
26	DHX38	1426786_s_at 1453751_at	1139	1.189	0.4038	Yes
27	PRPF31	1448633_at 1453005_at 1457083_at	1198	1.147	0.4103	Yes
28	NUFIP1	1448802_at	1208	1.143	0.4191	Yes
29	PPAN	1423703_at	1260	1.107	0.4256	Yes
30	NONO	1415820_x_at 1431239_at 1448103_s_at	1296	1.084	0.4326	Yes
31	RBPMS	1425652_s_at 1429359_s_at 1437161_x_at 1444765_at 1455936_a_at 1459078_at	1382	1.023	0.4369	Yes
32	IVNS1ABP	1420961_a_at 1425718_a_at 1450084_s_at	1418	1.007	0.4434	Yes
33	INTS4	1423806_at	1448	0.991	0.4500	Yes
34	U2AF1	1422509_at	1530	0.956	0.4539	Yes
35	POP4	1448419_at	1599	0.921	0.4582	Yes
36	SFRS2IP	1434691_at 1443085_at 1452884_at 1452885_at 1460445_at	1629	0.906	0.4641	Yes
37	SFPQ	1423795_at 1423796_at 1436898_at 1438458_a_at 1438459_x_at 1439058_at	1642	0.902	0.4707	Yes
38	INTS8	1431096_at 1435250_at 1456775_at 1460609_at	1673	0.891	0.4765	Yes
39	SFRS10	1419543_a_at 1427432_a_at 1441466_at 1446496_at	1734	0.860	0.4806	Yes
40	SRRM1	1420934_a_at 1420935_a_at 1442330_at 1447447_s_at 1450045_at 1454689_at 1459828_at	1760	0.848	0.4862	Yes
41	SIP1	1451044_at	1835	0.816	0.4894	Yes
42	SNRPF	1428672_at	1907	0.783	0.4924	Yes
43	SSB	1416421_a_at 1416422_a_at 1416423_x_at 1453928_a_at	1916	0.780	0.4982	Yes
44	SF3A3	1423811_at	1919	0.779	0.5044	Yes
45	EXOSC3	1431502_a_at	2125	0.705	0.5006	Yes
46	SFRS11	1427269_at 1430077_at 1439095_at 1452371_at	2213	0.680	0.5021	Yes
47	LSM3	1448536_at	2275	0.659	0.5045	Yes
48	NOL3	1444786_at 1451503_at	2308	0.648	0.5082	Yes
49	SFRS6	1416720_at 1416721_s_at 1447898_s_at 1448454_at	2442	0.612	0.5070	Yes
50	AARS	1423685_at 1451083_s_at	2497	0.595	0.5093	Yes
51	GEMIN5	1436310_at 1436311_at 1455453_at	2500	0.595	0.5140	Yes
52	LSM4	1448622_at	2525	0.589	0.5176	Yes
53	CRNKL1	1420849_at 1420850_at	2535	0.588	0.5219	Yes
54	INTS12	1428985_at 1452316_at	2579	0.577	0.5245	Yes
55	RBM6	1417213_a_at 1440223_at 1452466_a_at 1458912_at	2724	0.543	0.5223	Yes
56	LSM5	1418656_at	2766	0.533	0.5247	Yes
57	SFRS9	1417727_at	2822	0.523	0.5263	Yes
58	CPSF1	1417665_a_at	2908	0.506	0.5265	Yes
59	EFTUD2	1416557_a_at 1438835_a_at 1438836_at 1456107_x_at	2933	0.499	0.5293	Yes
60	SNRPD2	1452680_at	2997	0.489	0.5304	Yes
61	INTS7	1428531_at 1428532_at 1443045_at 1452822_at 1458590_at	3009	0.487	0.5338	Yes
62	SNRPB2	1426613_a_at 1452422_a_at	3041	0.480	0.5362	Yes
63	SF3A2	1450576_a_at 1455546_s_at	3243	0.444	0.5305	Yes
64	GEMIN6	1424300_at	3267	0.441	0.5330	Yes
65	EXOSC7	1448365_at	3338	0.433	0.5332	Yes
66	SFRS7	1424033_at 1424883_s_at 1436871_at	3351	0.431	0.5361	Yes
67	SETX	1433794_at 1440459_at 1458080_at	3370	0.429	0.5387	Yes
68	DHX15	1416144_a_at 1416145_at	3510	0.409	0.5356	No
69	FUSIP1	1418526_at 1418527_a_at 1423982_at 1449121_at	3740	0.383	0.5282	No
70	CPSF3	1422855_at 1437328_x_at 1437852_x_at	3760	0.380	0.5303	No
71	CSTF2	1419644_at 1419645_at 1455523_at	4368	0.323	0.5051	No
72	DDX20	1416751_a_at	4536	0.309	0.4999	No
73	GEMIN4	1433622_at	4567	0.307	0.5010	No
74	SLBP	1430058_at 1460168_at	5017	0.282	0.4826	No
75	SMNDC1	1429043_at 1452999_at	5406	0.263	0.4669	No
76	ASCC3L1	1454772_at 1460552_at	5678	0.250	0.4565	No
77	FARS2	1431354_a_at 1439406_x_at	5791	0.245	0.4533	No
78	INTS6	1423274_at 1423275_at 1436089_at 1443128_at	5887	0.241	0.4509	No
79	SNRPB	1419260_a_at 1437193_s_at	5920	0.240	0.4513	No
80	TXNL4A	1419179_at	6102	0.231	0.4448	No
81	GEMIN7	1435764_a_at	6413	0.219	0.4324	No
82	USP39	1437007_x_at 1460209_at	6714	0.207	0.4203	No
83	RBMS1	1418703_at 1434005_at 1441437_at 1458578_at 1459968_at	6830	0.202	0.4166	No
84	RBMY1A1	1420786_a_at	6955	0.198	0.4125	No
85	INTS5	1417887_at 1434011_a_at 1434012_at	7360	0.184	0.3954	No
86	SFRS8	1424997_at 1433677_at 1434966_at 1438674_a_at 1438675_at 1443905_at 1454683_at 1456880_at	8315	0.155	0.3529	No
87	KHSRP	1428174_x_at 1436813_x_at 1452690_at	8328	0.155	0.3536	No
88	DGCR8	1422981_at 1435439_at 1446169_at 1455311_at	8827	0.140	0.3319	No
89	HNRPF	1450963_at	9383	0.125	0.3074	No
90	SRPK1	1454042_a_at 1455107_at	10417	0.098	0.2608	No
91	PRPF4B	1425497_a_at 1425498_at 1436427_at 1451732_at 1451909_a_at 1455696_a_at	11921	0.060	0.1923	No
92	ADAT1	1420748_a_at 1425390_at 1444049_at	12437	0.048	0.1690	No
93	KIN	1427317_at	12546	0.045	0.1644	No
94	RNMT	1436328_at 1440002_at 1446442_at 1453106_a_at	12690	0.041	0.1582	No
95	INTS2	1429461_at 1436247_at	12894	0.036	0.1492	No
96	BICD1	1427530_at 1437548_at 1438701_at 1451684_a_at	13168	0.028	0.1369	No
97	SRPK2	1417134_at 1417135_at 1417136_s_at 1431372_at 1435746_at 1440080_at 1442241_at 1442980_at 1447755_at 1448603_at	13199	0.027	0.1357	No
98	RPS14	1436586_x_at	13283	0.025	0.1321	No
99	PPARGC1A	1434099_at 1434100_x_at 1437751_at 1456395_at 1460336_at	13325	0.024	0.1304	No
100	DHX16	1423925_at	13558	0.017	0.1199	No
101	CDC2L1	1418841_s_at	14078	0.001	0.0961	No
102	CPSF3L	1423964_at	15201	-0.041	0.0449	No
103	ZNF638	1417791_a_at 1417792_at 1447983_at 1458523_at	15873	-0.074	0.0147	No
104	DBR1	1451641_at	15959	-0.079	0.0115	No
105	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	16144	-0.089	0.0037	No
106	NUDT21	1417681_at 1428339_at 1437213_at 1455966_s_at	16301	-0.099	-0.0026	No
107	SF1	1422321_a_at 1423750_a_at 1423751_at 1459765_s_at 1459766_x_at	16321	-0.100	-0.0027	No
108	SF3B2	1429362_a_at 1433461_at 1438637_x_at 1453123_at 1456040_at 1456352_a_at 1459836_x_at	16521	-0.113	-0.0109	No
109	RNPS1	1437027_x_at 1437359_at 1437851_x_at 1438267_x_at 1448324_at	16703	-0.128	-0.0182	No
110	DDX23	1430050_at	16810	-0.137	-0.0220	No
111	RNGTT	1425844_a_at 1448714_at	17192	-0.173	-0.0381	No
112	ELAVL4	1428741_at 1450258_a_at 1452894_at 1457399_at	17201	-0.174	-0.0370	No
113	CDC40	1442667_at 1445348_at 1453342_at 1457366_at	17316	-0.187	-0.0408	No
114	SPOP	1416524_at 1416525_at 1444578_at 1447827_x_at 1455510_at 1458886_at	17604	-0.227	-0.0521	No
115	PRPF8	1422453_at	17866	-0.261	-0.0620	No
116	UPF1	1419685_at	18235	-0.315	-0.0764	No
117	ZNF346	1417088_at 1448581_at	18558	-0.368	-0.0882	No
118	KHDRBS1	1418628_at 1418630_at	18592	-0.374	-0.0867	No
119	SFRS4	1448778_at	18616	-0.379	-0.0848	No
120	HNRPUL1	1451984_at	18655	-0.387	-0.0834	No
121	SNRPN	1415895_at 1415896_x_at 1432096_at 1435716_x_at	18715	-0.397	-0.0830	No
122	INTS10	1439712_at	18875	-0.435	-0.0868	No
123	SF3B3	1415985_at 1430075_at	18945	-0.450	-0.0863	No
124	DDX17	1437773_x_at 1439037_at 1452155_a_at	19116	-0.492	-0.0902	No
125	RBMS2	1423540_at 1433979_at	19137	-0.498	-0.0871	No
126	PRPF18	1429614_at	19212	-0.514	-0.0864	No
127	RBM5	1438069_a_at 1441319_at 1444618_at 1444971_at 1452186_at 1452187_at 1456262_at	19453	-0.579	-0.0928	No
128	AGGF1	1425354_a_at	19557	-0.609	-0.0927	No
129	RBM3	1429169_at	19585	-0.617	-0.0890	No
130	SNW1	1429002_at 1429003_at 1459026_at	19636	-0.633	-0.0862	No
131	PPIG	1434475_at 1435341_at 1436505_at	19857	-0.709	-0.0906	No
132	CSTF1	1417117_at 1448597_at	19987	-0.755	-0.0905	No
133	CUGBP1	1423932_at 1425932_a_at 1426407_at 1426408_at 1427413_a_at	20022	-0.769	-0.0859	No
134	SF3A1	1419087_s_at 1445719_at 1446687_at 1449333_at	20117	-0.813	-0.0837	No
135	DHX8	1426629_at	20210	-0.852	-0.0811	No
136	DUSP11	1452594_at 1454785_at	20311	-0.899	-0.0785	No
137	WDR57	1428264_at 1452713_a_at	20547	-1.024	-0.0811	No
138	PRPF3	1424314_at 1457390_at	20816	-1.229	-0.0836	No
139	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	20867	-1.271	-0.0757	No
140	CSTF3	1424723_s_at 1443909_at	21036	-1.465	-0.0717	No
141	INTS3	1423921_at 1423922_s_at	21162	-1.646	-0.0643	No
142	PTBP1	1424874_a_at 1450443_at 1458284_at	21611	-2.519	-0.0647	No
143	SNRP70	1429009_at 1429010_at 1429011_x_at 1451104_a_at 1457047_at	21750	-3.026	-0.0468	No
144	PABPC1	1418883_a_at 1419500_at 1453840_at	21933	-6.913	0.0001	No