Details for gene set V$E2F

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	V$E2F_Q4
Enrichment Score (ES)	0.40786663
Normalized Enrichment Score (NES)	1.3278351
Nominal p-value	0.029227557
FDR q-value	0.3425603
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	HNRPD	1425142_a_at 1446083_at	33	4.652	0.0363	Yes
2	CDCA7	1428069_at 1445681_at	66	3.948	0.0670	Yes
3	NOLC1	1428869_at 1428870_at 1450087_a_at	110	3.462	0.0932	Yes
4	POLA2	1425794_at 1448369_at 1456713_at	120	3.359	0.1201	Yes
5	HNRPA1	1423531_a_at 1430020_x_at 1436549_a_at 1442758_at 1446038_at 1455305_x_at 1455740_at	123	3.348	0.1472	Yes
6	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	183	3.021	0.1691	Yes
7	HTF9C	1434244_x_at 1441920_x_at 1448114_a_at 1448115_at 1453995_a_at 1457620_at	210	2.897	0.1914	Yes
8	MCM6	1416251_at 1438852_x_at 1447756_x_at	293	2.536	0.2083	Yes
9	SFRS2	1415807_s_at 1427504_s_at 1427816_at 1452439_s_at	428	2.140	0.2196	Yes
10	CDT1	1424143_a_at 1424144_at 1455791_at	597	1.780	0.2263	Yes
11	NASP	1416042_s_at 1416043_at 1440328_at 1442728_at	665	1.689	0.2370	Yes
12	RAD51	1418281_at	783	1.536	0.2441	Yes
13	WEE1	1416773_at 1416774_at	812	1.497	0.2550	Yes
14	UNG	1425753_a_at	836	1.476	0.2659	Yes
15	MCM4	1416214_at 1436708_x_at	896	1.412	0.2747	Yes
16	POLE2	1427094_at 1431440_at	991	1.311	0.2811	Yes
17	ATF5	1425927_a_at	1060	1.244	0.2881	Yes
18	SNRPD1	1416336_s_at	1086	1.226	0.2969	Yes
19	PHF5A	1424170_at	1109	1.206	0.3057	Yes
20	POLE4	1423371_at 1423372_at 1432286_at 1444739_at	1191	1.151	0.3113	Yes
21	GMNN	1417506_at	1266	1.104	0.3169	Yes
22	RANBP1	1422547_at	1269	1.102	0.3258	Yes
23	CDC6	1417019_a_at	1359	1.045	0.3302	Yes
24	PRPS1	1416052_at	1386	1.021	0.3373	Yes
25	GSPT1	1426736_at 1426737_at 1435000_at 1446550_at 1452168_x_at 1455173_at	1410	1.011	0.3445	Yes
26	KPNB1	1416925_at 1434357_a_at 1448526_at 1451967_x_at	1504	0.964	0.3481	Yes
27	PB1	1426877_a_at 1426878_at 1427266_at 1442603_at	1535	0.952	0.3544	Yes
28	ILF3	1422546_at 1436802_at 1460669_at	1711	0.873	0.3535	Yes
29	SFRS10	1419543_a_at 1427432_a_at 1441466_at 1446496_at	1734	0.860	0.3595	Yes
30	RQCD1	1450887_at	1777	0.841	0.3644	Yes
31	EZH2	1416544_at 1444263_at	2029	0.737	0.3589	Yes
32	UXT	1418986_a_at	2030	0.737	0.3649	Yes
33	SEMA5A	1422167_at 1434776_at 1437422_at 1446772_at 1446865_at 1446910_at 1459109_at	2041	0.733	0.3704	Yes
34	POLD1	1448187_at 1456055_x_at	2046	0.729	0.3761	Yes
35	CLSPN	1441984_at 1456280_at	2089	0.718	0.3800	Yes
36	E2F3	1427462_at 1434564_at	2103	0.713	0.3852	Yes
37	DNAJC9	1426473_at	2208	0.681	0.3860	Yes
38	AK2	1448450_at 1448451_at	2274	0.659	0.3884	Yes
39	MRPL40	1448849_at	2285	0.656	0.3932	Yes
40	POLR2A	1422311_a_at 1426242_at 1458710_at	2325	0.644	0.3967	Yes
41	POLD3	1426838_at 1426839_at 1443733_x_at 1459647_at	2337	0.640	0.4014	Yes
42	UFD1L	1418087_at 1432367_a_at	2498	0.595	0.3989	Yes
43	RRM2	1416120_at 1434437_x_at 1448226_at	2521	0.591	0.4027	Yes
44	MSH2	1416988_at 1447888_x_at	2634	0.567	0.4022	Yes
45	INSM1	1421399_at 1455865_at	2652	0.562	0.4059	Yes
46	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	2708	0.547	0.4079	Yes
47	SLC9A5	1420070_a_at 1455760_at	2876	0.513	0.4044	No
48	JPH1	1421520_at 1438428_at	2910	0.506	0.4070	No
49	PCNA	1417947_at	2980	0.492	0.4078	No
50	MCM8	1429557_at	3109	0.467	0.4057	No
51	NELL2	1423560_at 1423561_at	3204	0.451	0.4051	No
52	SFRS7	1424033_at 1424883_s_at 1436871_at	3351	0.431	0.4019	No
53	MCM2	1434079_s_at 1448777_at	3383	0.426	0.4039	No
54	ING3	1422805_a_at 1422806_x_at 1450760_a_at 1460082_at	3396	0.424	0.4068	No
55	RBL1	1424156_at 1425166_at 1432604_at 1454293_at	3466	0.414	0.4070	No
56	E2F1	1417878_at 1431875_a_at 1447840_x_at	3596	0.399	0.4043	No
57	EPC1	1418850_at 1429914_at 1440198_at 1440742_at 1442279_at 1443675_at 1458315_at	3700	0.386	0.4027	No
58	HIRA	1436241_s_at 1450049_a_at 1450050_at 1459103_at	3711	0.386	0.4054	No
59	GPRC5B	1424613_at 1451411_at	4122	0.343	0.3894	No
60	HS6ST3	1421599_at	4143	0.341	0.3912	No
61	AP4M1	1418846_at	4232	0.335	0.3899	No
62	FANCD2	1430916_at 1438339_at 1439091_at 1442092_at	4450	0.317	0.3825	No
63	PCSK1	1421396_at	4475	0.315	0.3840	No
64	DNAJC11	1433880_at 1433881_at 1439763_at 1446686_at 1447055_at	4647	0.303	0.3786	No
65	ARHGAP11A	1438434_at	4651	0.302	0.3809	No
66	SYNGR4	1418875_at	4964	0.284	0.3689	No
67	PAQR4	1423101_at	5282	0.269	0.3565	No
68	STMN1	1415849_s_at	5579	0.255	0.3450	No
69	SFRS12	1427134_at 1427135_at 1427136_s_at 1458056_at	5692	0.249	0.3419	No
70	ZBTB4	1429722_at 1460488_at	5970	0.237	0.3311	No
71	HMGN2	1433507_a_at	6108	0.230	0.3267	No
72	PKMYT1	1418481_at 1438601_at	6385	0.220	0.3158	No
73	EPHB1	1455188_at	6800	0.204	0.2984	No
74	EFNA5	1421796_a_at 1436866_at 1440052_at 1446383_at 1451930_at	6826	0.203	0.2989	No
75	PHF15	1430081_at 1455345_at	7124	0.192	0.2868	No
76	CORT	1449820_at	8681	0.144	0.2166	No
77	GABRB3	1421189_at 1421190_at 1435021_at	8767	0.142	0.2138	No
78	PAX6	1419271_at 1425960_s_at 1437816_at 1452526_a_at 1456342_at	9129	0.132	0.1983	No
79	TREX2	1449367_at	9957	0.109	0.1612	No
80	GRIA4	1421351_at 1435722_at 1436772_at 1440891_at 1443285_at 1458230_at 1460097_at	10027	0.107	0.1589	No
81	STK35	1431107_at 1439802_at	10292	0.101	0.1476	No
82	NRP2	1425433_a_at 1426528_at 1435349_at 1452552_at 1456778_at 1459256_at	10474	0.097	0.1401	No
83	FHOD1	1435557_at	10486	0.096	0.1403	No
84	ATAD2	1436174_at 1443146_at 1443229_at	10715	0.091	0.1306	No
85	DNMT1	1422946_a_at 1435122_x_at 1445637_at 1447877_x_at	10924	0.085	0.1218	No
86	WNT3	1450763_x_at	10957	0.085	0.1210	No
87	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	11135	0.080	0.1135	No
88	PODN	1435180_at	11313	0.075	0.1060	No
89	RPS6KA5	1431050_at 1437625_at 1439004_at 1440343_at	11372	0.074	0.1039	No
90	SOAT1	1417695_a_at 1417696_at 1417697_at 1426818_at 1448068_at	11454	0.072	0.1008	No
91	HOXC10	1439798_at	11601	0.067	0.0946	No
92	CSPG2	1421694_a_at 1427256_at 1427257_at 1433043_at 1433044_at 1447586_at 1447887_x_at 1459767_x_at	11611	0.067	0.0947	No
93	SLC6A4	1417150_at	11642	0.067	0.0939	No
94	FBXO5	1429499_at	11832	0.062	0.0857	No
95	KCNA6	1421568_at 1441049_at 1456954_at	11996	0.058	0.0787	No
96	PVRL1	1438111_at 1438421_at 1440131_at 1446488_at 1450819_at	12861	0.036	0.0393	No
97	RAVER1	1427110_at 1427111_s_at 1444966_at	13140	0.029	0.0268	No
98	YBX2	1420762_a_at	13680	0.013	0.0021	No
99	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	13826	0.009	-0.0044	No
100	MYH10	1441057_at 1452740_at	13934	0.005	-0.0093	No
101	DMD	1417307_at 1430320_at 1446156_at 1448665_at 1457022_at	13998	0.004	-0.0122	No
102	RASAL2	1436910_at 1444671_at	14158	-0.001	-0.0195	No
103	ARHGAP6	1417704_a_at 1451867_x_at 1456333_a_at	14290	-0.006	-0.0254	No
104	SLC38A1	1415903_at 1454764_s_at	14568	-0.017	-0.0380	No
105	RHD	1417049_at	14748	-0.023	-0.0461	No
106	TOPBP1	1452241_at 1458480_at	15055	-0.035	-0.0598	No
107	TYRO3	1425248_a_at 1425249_a_at	15439	-0.051	-0.0770	No
108	DNAJC5G	1437814_at	15523	-0.055	-0.0804	No
109	FMO4	1425799_at 1444852_at	16077	-0.086	-0.1051	No
110	MXD3	1422970_at 1438847_at 1448878_at	16101	-0.087	-0.1054	No
111	CTNND2	1422592_at 1438891_at 1443638_at 1445114_at 1447552_s_at 1456116_at	16532	-0.115	-0.1242	No
112	WHSC1L1	1442085_at 1447931_at 1455668_at 1457630_at 1457793_a_at 1457794_at 1459907_a_at	16926	-0.146	-0.1411	No
113	PIM1	1423006_at 1435458_at	16948	-0.149	-0.1408	No
114	BRMS1L	1452850_s_at 1460443_at	17056	-0.158	-0.1445	No
115	HCN3	1451023_at	17304	-0.186	-0.1543	No
116	PPM1D	1434142_at 1449092_at 1459069_at	17334	-0.189	-0.1541	No
117	CASP8AP2	1449217_at	17386	-0.196	-0.1548	No
118	EED	1448653_at	17402	-0.198	-0.1539	No
119	STAG2	1421849_at 1450396_at	17433	-0.202	-0.1537	No
120	CBX5	1421932_at 1421933_at 1421934_at 1450416_at 1454636_at 1459845_at	17594	-0.225	-0.1592	No
121	CDC25A	1417131_at 1417132_at 1445995_at	17656	-0.233	-0.1601	No
122	PRKDC	1451576_at	17660	-0.234	-0.1583	No
123	DDB2	1425706_a_at 1436680_s_at	17878	-0.262	-0.1662	No
124	IL4I1	1419192_at	17947	-0.271	-0.1671	No
125	ABI2	1433985_at 1436984_at 1444783_at 1458053_at 1460153_at	18267	-0.321	-0.1791	No
126	USP37	1434242_at 1438212_at	18470	-0.352	-0.1855	No
127	CCNT1	1419313_at 1456477_at	18518	-0.359	-0.1848	No
128	PHF13	1455175_at	18589	-0.373	-0.1850	No
129	HNRPUL1	1451984_at	18655	-0.387	-0.1848	No
130	SP3	1431804_a_at 1459360_at	18758	-0.407	-0.1862	No
131	ADAMTS2	1435990_at 1455720_at 1457058_at	18807	-0.419	-0.1850	No
132	TBX6	1449868_at	18856	-0.431	-0.1837	No
133	CHD2	1444246_at 1445843_at	18943	-0.449	-0.1840	No
134	ACBD6	1452601_a_at 1453199_at	18993	-0.463	-0.1824	No
135	ASXL2	1439063_at 1444754_at 1453295_at 1458366_at 1460597_at	18997	-0.464	-0.1788	No
136	PHC1	1423212_at	19047	-0.474	-0.1772	No
137	MAZ	1427099_at	19064	-0.479	-0.1740	No
138	DDX17	1437773_x_at 1439037_at 1452155_a_at	19116	-0.492	-0.1724	No
139	ALDH6A1	1448104_at	19125	-0.495	-0.1687	No
140	SUMO1	1438289_a_at 1444557_at 1451005_at 1456349_x_at	19152	-0.500	-0.1659	No
141	IPO7	1442511_at 1454955_at 1458165_at	19340	-0.545	-0.1700	No
142	ACO2	1436934_s_at 1442102_at 1451002_at	19611	-0.623	-0.1773	No
143	NUP153	1441689_at 1441733_s_at 1452176_at	19846	-0.705	-0.1824	No
144	CTCF	1418330_at 1449042_at	19910	-0.726	-0.1793	No
145	CDC45L	1416575_at 1457838_at	20026	-0.772	-0.1783	No
146	RAB11B	1423448_at	20090	-0.799	-0.1747	No
147	STAG1	1421939_a_at 1421940_at 1431921_a_at 1434189_at 1435731_x_at 1445145_at 1445652_at 1450420_at	20101	-0.806	-0.1686	No
148	PPP1R8	1424554_at 1435821_s_at	20171	-0.838	-0.1650	No
149	USP52	1426700_a_at	20588	-1.049	-0.1756	No
150	H2AFZ	1441370_at	20630	-1.076	-0.1687	No
151	E2F7	1437187_at	20706	-1.134	-0.1629	No
152	HNRPR	1427129_a_at 1438807_at 1452030_a_at	20768	-1.190	-0.1560	No
153	SFRS1	1428099_a_at 1428100_at 1430982_at 1434972_x_at 1452430_s_at 1453722_s_at 1457136_at	20867	-1.271	-0.1502	No
154	UGCGL1	1432318_at 1448009_at 1455839_at	21127	-1.587	-0.1492	No
155	NUP62	1415925_a_at 1415926_at 1437612_at 1438917_x_at 1447905_x_at 1448150_at	21173	-1.664	-0.1377	No
156	PPP1CC	1440594_at	21199	-1.702	-0.1250	No
157	DCK	1428838_a_at 1439012_a_at 1449176_a_at	21326	-1.880	-0.1155	No
158	SLCO3A1	1418030_at 1434537_at 1448918_at	21342	-1.913	-0.1006	No
159	KBTBD7	1428192_at 1439865_at 1452700_s_at	21353	-1.923	-0.0855	No
160	MCM3	1420029_at 1426653_at	21359	-1.933	-0.0700	No
161	ARID4A	1436191_at 1438464_at 1456420_at	21414	-2.023	-0.0560	No
162	ERBB2IP	1428011_a_at 1439079_a_at 1439080_at 1439638_at 1440573_at	21476	-2.135	-0.0414	No
163	TMPO	1421237_at 1426020_at 1426349_s_at 1428976_at 1452036_a_at	21518	-2.216	-0.0253	No
164	ID3	1416630_at	21590	-2.418	-0.0089	No
165	ZCCHC8	1423755_at 1441639_at	21755	-3.037	0.0083	No