Details for gene set SANSOM_APC_LOSS5

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	SANSOM_APC_LOSS5_UP
Enrichment Score (ES)	0.6241111
Normalized Enrichment Score (NES)	1.8969642
Nominal p-value	0.0
FDR q-value	0.0032393755
FWER p-Value	0.041

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RNF4	1423654_a_at 1445749_at 1451072_a_at	7	6.208	0.0664	Yes
2	EIF1	1423798_a_at 1423799_at 1424343_a_at 1424344_s_at	19	5.188	0.1217	Yes
3	CDCA7	1428069_at 1445681_at	66	3.948	0.1620	Yes
4	PRIM2A	1418035_a_at 1418036_at 1445474_at	148	3.170	0.1923	Yes
5	PES1	1416172_at 1416173_at	153	3.142	0.2259	Yes
6	NSUN2	1423850_at 1453759_at	175	3.066	0.2579	Yes
7	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	183	3.021	0.2901	Yes
8	GRWD1	1436887_x_at 1452171_at 1455841_s_at	198	2.947	0.3211	Yes
9	TSPAN12	1438050_x_at 1454604_s_at	241	2.719	0.3484	Yes
10	WDR43	1428389_s_at 1428390_at	267	2.625	0.3755	Yes
11	NOL5	1450986_at	271	2.617	0.4034	Yes
12	EIF4G2	1415863_at 1452758_s_at	343	2.384	0.4258	Yes
13	FEM1B	1418323_at 1418324_at	386	2.267	0.4483	Yes
14	GNL3	1433656_a_at 1440766_at	458	2.055	0.4671	Yes
15	RSL1D1	1456383_at	467	2.042	0.4887	Yes
16	1110014J01RIK	1444383_at 1448141_at 1456814_at	617	1.749	0.5006	Yes
17	MYC	1424942_a_at	729	1.605	0.5128	Yes
18	DDX21	1448270_at 1448271_a_at	747	1.586	0.5291	Yes
19	FTSJ3	1451026_at	890	1.416	0.5378	Yes
20	CIRH1A	1423884_at	922	1.385	0.5513	Yes
21	SMYD5	1425479_at 1447749_at 1451722_s_at	1006	1.298	0.5614	Yes
22	GNL2	1426579_at	1087	1.226	0.5709	Yes
23	HELLS	1417541_at 1430139_at 1453361_at	1189	1.151	0.5787	Yes
24	TIAM1	1418057_at 1444373_at 1453887_a_at	1401	1.016	0.5800	Yes
25	RCC2	1426897_at 1452226_at	1470	0.977	0.5873	Yes
26	HK2	1422612_at	1515	0.961	0.5957	Yes
27	PLA2G12A	1452026_a_at	1552	0.944	0.6042	Yes
28	NUP54	1432539_a_at 1433580_at 1438951_x_at 1447253_x_at 1459651_s_at	1554	0.943	0.6142	Yes
29	KIF20A	1449207_a_at	1560	0.939	0.6241	Yes
30	ZBTB17	1416224_at 1443041_at	2157	0.695	0.6043	No
31	CD44	1423760_at 1434376_at 1443265_at 1452483_a_at	2293	0.655	0.6052	No
32	FAM60A	1448126_at	2553	0.584	0.5996	No
33	SLC27A1	1422811_at 1435658_at	2786	0.529	0.5946	No
34	PRKRIR	1426482_at 1426483_at	3065	0.474	0.5870	No
35	TNFRSF19	1415921_a_at 1425212_a_at 1427600_at 1445949_at 1448147_at	3110	0.467	0.5900	No
36	TGIF	1422286_a_at	3545	0.405	0.5745	No
37	FUSIP1	1418526_at 1418527_a_at 1423982_at 1449121_at	3740	0.383	0.5697	No
38	CD276	1417599_at	4671	0.301	0.5304	No
39	CITED1	1449031_at	5103	0.278	0.5137	No
40	ADAM8	1416871_at	5844	0.243	0.4824	No
41	TXNL4A	1419179_at	6102	0.231	0.4731	No
42	COPS2	1423459_at 1437039_at	6880	0.201	0.4397	No
43	SEMA3C	1420696_at 1429348_at	7696	0.173	0.4043	No
44	FGFR4	1427776_a_at 1427777_x_at 1427845_at 1427846_x_at	7797	0.170	0.4015	No
45	EPHB3	1451550_at	8433	0.151	0.3741	No
46	MMP7	1449478_at	8680	0.144	0.3644	No
47	ZZZ3	1434332_at 1438487_s_at 1441748_at	9719	0.116	0.3181	No
48	2300002G24RIK	1453092_at	10426	0.098	0.2868	No
49	4933403M19RIK	1429999_at	10697	0.091	0.2755	No
50	PLA2G2A	1450128_at	11026	0.083	0.2613	No
51	FOXA2	1422833_at	11537	0.069	0.2387	No
52	KIF5A	1434670_at	11884	0.060	0.2236	No
53	MDFI	1420713_a_at 1425924_at	12045	0.057	0.2168	No
54	IFIT2	1418293_at	12269	0.052	0.2072	No
55	REPS1	1416216_at 1440822_x_at 1446001_at	12501	0.046	0.1971	No
56	LAMC2	1421279_at 1452505_at	12632	0.043	0.1916	No
57	ETF1	1420023_at 1420024_s_at 1424013_at 1440629_at 1451208_at	12771	0.039	0.1857	No
58	MYO1B	1427450_x_at 1441210_at 1447364_x_at 1448989_a_at 1448990_a_at 1458007_at 1459679_s_at	13725	0.012	0.1422	No
59	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	13826	0.009	0.1377	No
60	RIN2	1426368_at 1441209_at 1442829_at	13848	0.008	0.1369	No
61	PCK2	1425615_a_at 1452620_at	13872	0.007	0.1359	No
62	9630050M13RIK	1438402_at	14061	0.002	0.1273	No
63	2810037C14RIK	1417062_at	14258	-0.005	0.1184	No
64	CD24	1416034_at 1437502_x_at 1448182_a_at	14687	-0.021	0.0990	No
65	UTP14A	1432250_at 1435099_at	14745	-0.023	0.0967	No
66	DDIT4	1428306_at	14981	-0.032	0.0863	No
67	C80678	1419953_at 1449680_at	15426	-0.051	0.0665	No
68	SRR	1419664_at 1438549_a_at 1438550_x_at 1453421_at 1455045_at 1458393_at	15596	-0.059	0.0594	No
69	CEBPZ	1420497_a_at 1429962_at	15611	-0.060	0.0594	No
70	BTC	1421161_at 1435541_at	15962	-0.079	0.0442	No
71	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	16144	-0.089	0.0369	No
72	ZRF1	1417657_s_at 1425910_at 1448794_s_at 1454219_at	16977	-0.152	0.0004	No
73	ZFP90	1440334_at 1449126_at	17049	-0.157	-0.0011	No
74	RNF149	1429321_at	17108	-0.164	-0.0020	No
75	PKP1	1449586_at	17176	-0.171	-0.0032	No
76	ORC2L	1418225_at 1418226_at 1418227_at	17417	-0.200	-0.0121	No
77	SOX4	1455867_at 1458332_x_at	17504	-0.213	-0.0137	No
78	HDC	1451796_s_at 1454713_s_at	17848	-0.259	-0.0266	No
79	SETD1A	1427116_at	18821	-0.422	-0.0666	No
80	TGFBR1	1420893_a_at 1420894_at 1420895_at 1446946_at	18822	-0.422	-0.0621	No
81	4930573I19RIK	1439502_at	19170	-0.504	-0.0725	No
82	1190002H23RIK	1418003_at 1438511_a_at	20251	-0.870	-0.1126	No
83	PTBP2	1423470_at 1423471_at 1444746_at 1446490_at 1458757_at	20523	-1.009	-0.1142	No
84	KCNQ1	1441588_at 1442029_at 1446255_at 1447418_at 1449464_at 1457781_at 1459443_at	20572	-1.038	-0.1052	No
85	ETS2	1416268_at 1437809_x_at 1447685_x_at	21565	-2.330	-0.1256	No
86	MAP4K4	1422615_at 1440609_at 1448050_s_at 1459912_at	21597	-2.448	-0.1007	No
87	HNRPAB	1415914_at 1426114_at 1431349_at 1448144_at 1453849_s_at 1455855_x_at 1459880_at	21695	-2.822	-0.0748	No
88	CDK9	1417269_at 1457240_at	21715	-2.868	-0.0448	No
89	ANP32B	1417082_at 1446091_at	21912	-5.109	0.0011	No