Details for gene set HSA04670_LEUKOCYTE_TRANSENDOTHELIAL

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	HSA04670_LEUKOCYTE_TRANSENDOTHELIAL_MIGRATION
Enrichment Score (ES)	-0.553051
Normalized Enrichment Score (NES)	-1.6877235
Nominal p-value	0.0019157088
FDR q-value	0.16800222
FWER p-Value	0.952

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PLCG1	1435149_at 1450360_at	37	4.528	0.0594	No
2	ITGA4	1421194_at 1427615_at 1446350_at 1450155_at 1456498_at 1457376_at	767	1.567	0.0471	No
3	MAPK13	1448871_at	1246	1.114	0.0402	No
4	GNAI3	1428645_at 1437225_x_at	1322	1.073	0.0513	No
5	NCF4	1418465_at	1328	1.069	0.0654	No
6	CD99	1428850_x_at 1430514_a_at 1453556_x_at	1420	1.006	0.0749	No
7	JAM2	1419288_at 1431416_a_at 1431417_at 1436568_at 1449408_at	1624	0.908	0.0778	No
8	PLCG2	1426926_at	1909	0.782	0.0753	No
9	PIK3R2	1418463_at	2025	0.739	0.0800	No
10	ROCK1	1423444_at 1423445_at 1441162_at 1446518_at 1450994_at 1460729_at	2376	0.630	0.0725	No
11	CYBB	1422978_at 1436778_at 1436779_at	2400	0.623	0.0798	No
12	PXN	1424027_at 1426085_a_at 1456135_s_at	3543	0.405	0.0330	No
13	CDC42	1415724_a_at 1435807_at 1449574_a_at 1460708_s_at	3826	0.373	0.0251	No
14	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	4014	0.353	0.0213	No
15	CDH5	1422047_at 1433956_at	4626	0.304	-0.0026	No
16	RAPGEF3	1424470_a_at 1424471_at 1437012_x_at 1437946_x_at 1438590_at	4656	0.302	0.0002	No
17	NCF2	1448561_at	4736	0.297	0.0006	No
18	CLDN5	1417839_at	4917	0.287	-0.0038	No
19	MYL2	1448394_at	5422	0.262	-0.0234	No
20	CLDN2	1417231_at 1417232_at	5818	0.244	-0.0382	No
21	MYL9	1452670_at	5965	0.237	-0.0417	No
22	ACTN3	1418677_at	6299	0.224	-0.0539	No
23	CLDN16	1420434_at	6562	0.214	-0.0630	No
24	CLDN7	1448393_at	6804	0.204	-0.0713	No
25	CLDN14	1420345_at	6811	0.203	-0.0688	No
26	MYL7	1449071_at	6940	0.199	-0.0720	No
27	CLDN18	1425445_a_at 1449428_at	7775	0.171	-0.1079	No
28	CTNNA3	1441560_at	7788	0.171	-0.1062	No
29	CLDN15	1418920_at	7895	0.167	-0.1088	No
30	MMP2	1416136_at 1439364_a_at	8034	0.163	-0.1129	No
31	RAC1	1423734_at 1437674_at 1451086_s_at	8362	0.154	-0.1258	No
32	JAM3	1423503_at 1423504_at 1444895_at	8744	0.142	-0.1413	No
33	MLLT4	1431799_at 1436303_at	9068	0.133	-0.1543	No
34	ITGAM	1422046_at	9122	0.132	-0.1550	No
35	CLDN3	1426332_a_at 1434651_a_at 1451701_x_at 1453258_at 1460569_x_at	9665	0.117	-0.1782	No
36	CLDN19	1425727_at	9691	0.117	-0.1778	No
37	CLDN22	1430237_at	10135	0.105	-0.1967	No
38	PIK3R3	1445097_at 1447068_at 1456482_at	10269	0.101	-0.2014	No
39	VCAM1	1415989_at 1436003_at 1448162_at 1451314_a_at	10324	0.100	-0.2025	No
40	CLDN11	1416003_at	10454	0.097	-0.2071	No
41	CLDN10	1426147_s_at	10495	0.096	-0.2076	No
42	ARHGAP5	1423194_at 1450896_at 1450897_at 1457410_at	10717	0.091	-0.2165	No
43	CTNND1	1422450_at 1437448_s_at 1445830_at	10744	0.090	-0.2165	No
44	RAPGEF4	1421622_a_at 1425518_at 1440274_at 1444034_at	10945	0.085	-0.2245	No
45	ROCK2	1423592_at 1451041_at	11226	0.078	-0.2363	No
46	CLDN1	1437932_a_at 1438850_at 1438851_x_at 1450014_at	11399	0.073	-0.2432	No
47	CLDN23	1424409_at	11568	0.069	-0.2500	No
48	CLDN9	1439427_at 1450524_at	12314	0.051	-0.2834	No
49	PTPN11	1421196_at 1427699_a_at 1451225_at	12683	0.041	-0.2997	No
50	OCLN	1448873_at	12736	0.040	-0.3015	No
51	NCF1	1425609_at 1451767_at 1456772_at	12997	0.033	-0.3130	No
52	F11R	1424595_at 1436374_x_at	13437	0.021	-0.3328	No
53	RAP1A	1424139_at	13497	0.019	-0.3353	No
54	CTNNA1	1437275_at 1437807_x_at 1443662_at 1448149_at	14357	-0.009	-0.3745	No
55	BCAR1	1439388_s_at 1450622_at	14577	-0.017	-0.3843	No
56	CTNNA2	1442893_at 1447117_at 1448895_a_at	14578	-0.017	-0.3841	No
57	CLDN8	1449091_at	14725	-0.022	-0.3905	No
58	CLDN6	1417845_at	14937	-0.031	-0.3997	No
59	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	15150	-0.039	-0.4089	No
60	PIK3CB	1445731_at 1453069_at	15462	-0.052	-0.4224	No
61	CYBA	1454268_a_at	15745	-0.067	-0.4345	No
62	PRKCA	1427562_a_at 1443069_at 1445028_at 1445395_at 1446598_at 1450945_at	15821	-0.071	-0.4369	No
63	MAPK11	1421925_at 1421926_at	15824	-0.071	-0.4361	No
64	PIK3CA	1423144_at 1429434_at 1429435_x_at 1440054_at 1453134_at 1460326_at	16083	-0.086	-0.4467	No
65	ACTN2	1448327_at 1456968_at	16197	-0.093	-0.4507	No
66	RHOA	1437628_s_at	17032	-0.156	-0.4868	No
67	GRLF1	1434009_at 1440675_at 1442181_at	17046	-0.157	-0.4852	No
68	MMP9	1416298_at 1448291_at	17610	-0.228	-0.5079	No
69	RAC2	1417620_at 1440208_at	17826	-0.255	-0.5144	No
70	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	18001	-0.278	-0.5186	No
71	ICAM1	1424067_at	18113	-0.296	-0.5197	No
72	CXCL12	1417574_at 1439084_at 1448823_at	18377	-0.337	-0.5272	No
73	THY1	1423135_at	18740	-0.402	-0.5383	No
74	ACTN1	1427385_s_at 1428585_at 1452415_at	18819	-0.422	-0.5362	No
75	MAPK12	1447823_x_at 1449283_a_at	19094	-0.486	-0.5422	No
76	VCL	1416156_at 1416157_at 1445256_at	19248	-0.521	-0.5422	No
77	CXCR4	1448710_at	19371	-0.553	-0.5403	No
78	MYLPF	1448371_at	19650	-0.638	-0.5445	Yes
79	GNAI1	1427510_at 1434440_at 1454959_s_at	19723	-0.662	-0.5388	Yes
80	PRKCB1	1423478_at 1438981_at 1443144_at 1459674_at 1460419_a_at	19874	-0.712	-0.5361	Yes
81	VAV3	1417122_at 1417123_at 1446795_at 1448600_s_at 1458630_at	20163	-0.833	-0.5381	Yes
82	CLDN4	1418283_at	20280	-0.882	-0.5315	Yes
83	VAV1	1422932_a_at	20423	-0.958	-0.5250	Yes
84	MYLC2PL	1420805_at	20432	-0.962	-0.5124	Yes
85	ITGB1	1426918_at 1426919_at 1426920_x_at 1427771_x_at 1438119_at 1452545_a_at	20438	-0.966	-0.4996	Yes
86	SIPA1	1416206_at	20481	-0.983	-0.4883	Yes
87	VASP	1451097_at	20512	-1.003	-0.4762	Yes
88	MSN	1421814_at 1450379_at	20683	-1.114	-0.4689	Yes
89	GNAI2	1419449_a_at 1435652_a_at	20687	-1.116	-0.4540	Yes
90	RASSF5	1422637_at 1422638_s_at	20921	-1.311	-0.4470	Yes
91	ITGB2	1450678_at	21110	-1.563	-0.4345	Yes
92	PIK3R5	1434980_at	21318	-1.866	-0.4189	Yes
93	RAP1B	1435518_at 1435519_at 1455349_at	21373	-1.951	-0.3950	Yes
94	PIK3CD	1422991_at 1422992_s_at 1443798_at 1453281_at 1458321_at	21492	-2.164	-0.3713	Yes
95	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	21504	-2.182	-0.3423	Yes
96	PECAM1	1421287_a_at 1447092_at	21505	-2.184	-0.3129	Yes
97	TXK	1425785_a_at	21628	-2.579	-0.2837	Yes
98	PIK3CG	1422707_at 1422708_at	21647	-2.651	-0.2488	Yes
99	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	21796	-3.373	-0.2101	Yes
100	ACTN4	1423449_a_at 1444258_at	21819	-3.472	-0.1643	Yes
101	PTK2B	1434653_at 1442437_at 1442927_at	21836	-3.576	-0.1168	Yes
102	VAV2	1421272_at 1435065_x_at 1435244_at 1458758_at	21871	-3.956	-0.0650	Yes
103	RHOH	1429319_at 1441385_at 1443015_at	21909	-5.037	0.0012	Yes