Details for gene set HSA04660_T_CELL_RECEPTOR_SIGNALING

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	HSA04660_T_CELL_RECEPTOR_SIGNALING_PATHWAY
Enrichment Score (ES)	-0.60468173
Normalized Enrichment Score (NES)	-1.8092543
Nominal p-value	0.0
FDR q-value	0.07846209
FWER p-Value	0.335

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PLCG1	1435149_at 1450360_at	37	4.528	0.0476	No
2	KRAS	1426228_at 1426229_s_at 1434000_at 1451979_at	84	3.699	0.0858	No
3	FYN	1417558_at 1441647_at 1448765_at	384	2.271	0.0968	No
4	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	525	1.916	0.1112	No
5	PTPRC	1422124_a_at 1440165_at	1114	1.204	0.0974	No
6	CDK4	1422441_x_at	1506	0.963	0.0900	No
7	PIK3R2	1418463_at	2025	0.739	0.0743	No
8	HRAS	1422407_s_at 1424132_at	2039	0.734	0.0817	No
9	MALT1	1445068_at 1456126_at 1456429_at	2583	0.576	0.0632	No
10	NCK2	1416796_at 1416797_at 1458432_at	3048	0.479	0.0471	No
11	PPP3CC	1420743_a_at 1430025_at	3647	0.392	0.0240	No
12	CDC42	1415724_a_at 1435807_at 1449574_a_at 1460708_s_at	3826	0.373	0.0199	No
13	MAP3K14	1422999_at 1434364_at	3846	0.371	0.0231	No
14	PPP3R2	1437535_at	3971	0.358	0.0213	No
15	PDCD1	1449835_at	4090	0.346	0.0197	No
16	IL10	1450330_at	4715	0.299	-0.0056	No
17	IFNG	1425947_at	6018	0.234	-0.0627	No
18	NFKBIE	1431843_a_at 1458299_s_at	6075	0.232	-0.0627	No
19	PPP3R1	1421786_at 1433591_at 1450368_a_at	6792	0.204	-0.0933	No
20	CBLC	1422666_at 1431692_a_at	7617	0.175	-0.1291	No
21	CBL	1434829_at 1446608_at 1450457_at 1455886_at	9569	0.120	-0.2171	No
22	NFATC4	1423380_s_at 1432821_at 1454369_a_at	10010	0.108	-0.2361	No
23	PIK3R3	1445097_at 1447068_at 1456482_at	10269	0.101	-0.2468	No
24	NFKBIB	1421266_s_at 1446718_at	10653	0.092	-0.2633	No
25	IL4	1449864_at	10673	0.092	-0.2632	No
26	CSF2	1427429_at	11291	0.076	-0.2906	No
27	CD3E	1422105_at 1445748_at	11496	0.071	-0.2991	No
28	ZAP70	1422701_at 1439749_at 1440178_x_at	11615	0.067	-0.3038	No
29	TNF	1419607_at	11889	0.060	-0.3157	No
30	JUN	1417409_at 1448694_at	13314	0.024	-0.3806	No
31	PAK7	1440981_at 1446159_at 1455847_at 1458766_at	13359	0.023	-0.3823	No
32	PAK3	1417923_at 1417924_at 1437318_at	14187	-0.003	-0.4202	No
33	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	15150	-0.039	-0.4638	No
34	PAK4	1428548_at	15289	-0.045	-0.4696	No
35	PIK3CB	1445731_at 1453069_at	15462	-0.052	-0.4769	No
36	LAT	1460651_at	15852	-0.072	-0.4939	No
37	PIK3CA	1423144_at 1429434_at 1429435_x_at 1440054_at 1453134_at 1460326_at	16083	-0.086	-0.5035	No
38	CD40LG	1422283_at	16209	-0.093	-0.5082	No
39	NFATC1	1417621_at 1425761_a_at 1428479_at 1447084_at 1447085_s_at	16559	-0.117	-0.5229	No
40	RHOA	1437628_s_at	17032	-0.156	-0.5428	No
41	GRB2	1418508_a_at 1449111_a_at	17171	-0.170	-0.5473	No
42	AKT3	1422078_at 1435260_at 1435879_at 1443222_at 1460307_at	17177	-0.171	-0.5457	No
43	PAK6	1445475_at 1455200_at	17358	-0.192	-0.5518	No
44	CHUK	1417091_at 1428210_s_at 1451383_a_at	17435	-0.202	-0.5531	No
45	NCK1	1421487_a_at 1424543_at 1447271_at	17487	-0.209	-0.5532	No
46	NFKB2	1425902_a_at 1429128_x_at	17945	-0.270	-0.5711	No
47	MAP3K8	1419208_at	18046	-0.284	-0.5726	No
48	SOS2	1452281_at	18613	-0.379	-0.5944	No
49	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	18818	-0.421	-0.5992	Yes
50	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	18829	-0.424	-0.5950	Yes
51	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	18974	-0.459	-0.5966	Yes
52	SOS1	1421884_at 1421885_at 1421886_at	18996	-0.463	-0.5925	Yes
53	PAK1	1420979_at 1420980_at 1450070_s_at 1459029_at	19199	-0.510	-0.5962	Yes
54	NFAT5	1426029_a_at 1438999_a_at 1439328_at 1439805_at 1448966_a_at 1451921_a_at 1458213_at	19385	-0.557	-0.5986	Yes
55	CTLA4	1419334_at	19405	-0.562	-0.5934	Yes
56	IKBKB	1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at	19447	-0.577	-0.5890	Yes
57	CD3D	1422828_at	19644	-0.636	-0.5910	Yes
58	GRAP2	1456432_at	19875	-0.712	-0.5938	Yes
59	NRAS	1422688_a_at 1454060_a_at	19925	-0.733	-0.5880	Yes
60	PTPN6	1456694_x_at 1460188_at	20072	-0.789	-0.5861	Yes
61	VAV3	1417122_at 1417123_at 1446795_at 1448600_s_at 1458630_at	20163	-0.833	-0.5812	Yes
62	FOS	1423100_at	20289	-0.888	-0.5772	Yes
63	IL5	1425546_a_at 1442049_at 1450550_at	20299	-0.893	-0.5679	Yes
64	ICOS	1421930_at 1421931_at 1436598_at	20392	-0.937	-0.5620	Yes
65	VAV1	1422932_a_at	20423	-0.958	-0.5529	Yes
66	IKBKG	1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at	20443	-0.967	-0.5432	Yes
67	CD8A	1440164_x_at 1440811_x_at	20574	-1.039	-0.5379	Yes
68	PPP3CA	1426401_at 1438478_a_at 1440051_at 1452056_s_at 1458495_at	20582	-1.046	-0.5268	Yes
69	CD3G	1419178_at	20668	-1.109	-0.5186	Yes
70	PDK1	1423747_a_at 1423748_at 1434974_at 1435836_at	20815	-1.229	-0.5119	Yes
71	PRKCQ	1426044_a_at	20851	-1.253	-0.4999	Yes
72	CBLB	1437304_at 1455082_at 1458469_at	20915	-1.305	-0.4886	Yes
73	PAK2	1434250_at 1454887_at	21124	-1.581	-0.4809	Yes
74	LCP2	1418641_at 1418642_at	21182	-1.674	-0.4653	Yes
75	NFKB1	1427705_a_at 1442949_at	21207	-1.718	-0.4477	Yes
76	PPP3CB	1427468_at 1428473_at 1428474_at 1433835_at 1446149_at 1459378_at	21215	-1.729	-0.4292	Yes
77	CARD11	1430257_at 1435996_at	21299	-1.844	-0.4129	Yes
78	PIK3R5	1434980_at	21318	-1.866	-0.3934	Yes
79	NFATC3	1419976_s_at 1452497_a_at	21381	-1.965	-0.3749	Yes
80	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	21477	-2.135	-0.3560	Yes
81	PIK3CD	1422991_at 1422992_s_at 1443798_at 1453281_at 1458321_at	21492	-2.164	-0.3331	Yes
82	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	21504	-2.182	-0.3098	Yes
83	CD28	1417597_at 1437025_at 1443703_at	21558	-2.314	-0.2870	Yes
84	CD4	1419696_at 1427779_a_at	21629	-2.582	-0.2621	Yes
85	PIK3CG	1422707_at 1422708_at	21647	-2.651	-0.2341	Yes
86	RASGRP1	1421176_at 1431749_a_at 1434295_at 1450143_at	21672	-2.736	-0.2054	Yes
87	CD247	1420716_at 1426079_at 1426396_at 1428059_at 1428060_at 1438392_at 1452539_a_at	21769	-3.129	-0.1757	Yes
88	AKT2	1421324_a_at 1424480_s_at 1455703_at	21832	-3.540	-0.1400	Yes
89	VAV2	1421272_at 1435065_x_at 1435244_at 1458758_at	21871	-3.956	-0.0987	Yes
90	TEC	1441524_at 1460204_at	21881	-4.130	-0.0541	Yes
91	CD8B	1426170_a_at 1446372_at 1448569_at 1458652_at	21914	-5.200	0.0010	Yes