Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	NETPATH_TCR
Enrichment Score (ES)	-0.5361951
Normalized Enrichment Score (NES)	-1.672931
Nominal p-value	0.0
FDR q-value	0.19966258
FWER p-Value	0.878

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PLCG1	1435149_at 1450360_at	37	4.528	0.0403	No
2	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	183	3.021	0.0617	No
3	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	243	2.703	0.0841	No
4	DTX1	1425822_a_at 1458643_at	326	2.439	0.1030	No
5	CEBPB	1418901_at 1427844_a_at	344	2.380	0.1243	No
6	ACP1	1422716_a_at 1422717_at 1450720_at 1450721_at	381	2.278	0.1438	No
7	FYN	1417558_at 1441647_at 1448765_at	384	2.271	0.1648	No
8	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	525	1.916	0.1761	No
9	UNC119	1418123_at	633	1.734	0.1873	No
10	SHB	1434153_at	691	1.653	0.2001	No
11	SKAP1	1437249_at 1440326_at 1440782_at 1441322_at 1441418_at 1441589_at 1456678_at	755	1.579	0.2118	No
12	PTPRC	1422124_a_at 1440165_at	1114	1.204	0.2066	No
13	PIK3R2	1418463_at	2025	0.739	0.1718	No
14	TUBB2A	1427838_at	3185	0.455	0.1229	No
15	CDC42	1415724_a_at 1435807_at 1449574_a_at 1460708_s_at	3826	0.373	0.0970	No
16	ARHGEF6	1429012_at 1442292_at	4301	0.330	0.0784	No
17	SLA	1420818_at 1420819_at 1441761_at 1447813_x_at	4746	0.297	0.0608	No
18	ABL1	1423999_at 1441291_at 1444134_at 1445153_at	5448	0.261	0.0311	No
19	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	6119	0.230	0.0026	No
20	SKAP2	1418895_at 1457097_at 1460623_at	6591	0.212	-0.0171	No
21	NFAM1	1425714_a_at 1428790_at	8496	0.150	-0.1029	No
22	ENAH	1421624_a_at 1424800_at 1424801_at 1431162_a_at 1442223_at 1446426_at 1458876_at	8658	0.145	-0.1089	No
23	STK39	1419550_a_at 1419551_s_at 1431434_at 1445431_at	8762	0.142	-0.1123	No
24	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	9007	0.135	-0.1223	No
25	DLG1	1415691_at 1445798_at 1450768_at 1459635_at	9323	0.126	-0.1355	No
26	CBL	1434829_at 1446608_at 1450457_at 1455886_at	9569	0.120	-0.1456	No
27	RIPK2	1421236_at 1450173_at	10083	0.106	-0.1681	No
28	GIT2	1423391_at 1432160_at 1435925_at	10148	0.104	-0.1701	No
29	PTPN3	1443162_at 1455450_at	10806	0.089	-0.1994	No
30	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	11135	0.080	-0.2137	No
31	CD3E	1422105_at 1445748_at	11496	0.071	-0.2295	No
32	ZAP70	1422701_at 1439749_at 1440178_x_at	11615	0.067	-0.2343	No
33	HOMER3	1424859_at	11937	0.059	-0.2485	No
34	JAK3	1425750_a_at 1446515_at	12394	0.049	-0.2689	No
35	YWHAQ	1420828_s_at 1420829_a_at 1420830_x_at 1432842_s_at 1437608_x_at 1454378_at 1460590_s_at 1460621_x_at	12435	0.048	-0.2703	No
36	CD2AP	1420906_at 1420907_at 1420908_at 1460140_at	12607	0.043	-0.2777	No
37	PTPN11	1421196_at 1427699_a_at 1451225_at	12683	0.041	-0.2808	No
38	SRC	1423240_at 1450918_s_at	12710	0.041	-0.2816	No
39	JUN	1417409_at 1448694_at	13314	0.024	-0.3090	No
40	RAP1A	1424139_at	13497	0.019	-0.3171	No
41	ARHGEF7	1424482_at 1449066_a_at	14086	0.001	-0.3441	No
42	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	15150	-0.039	-0.3924	No
43	PTPRJ	1425587_a_at 1425588_at 1427602_at 1427629_at 1443683_at 1455030_at	15250	-0.043	-0.3965	No
44	PAG1	1423002_at 1440033_at 1443319_at 1456403_at	15433	-0.051	-0.4044	No
45	LAT	1460651_at	15852	-0.072	-0.4229	No
46	SHC1	1422853_at 1422854_at	16122	-0.088	-0.4344	No
47	DUSP3	1425608_at 1434472_at 1456769_at	16596	-0.120	-0.4549	No
48	MAP2K1	1416351_at	16691	-0.127	-0.4581	No
49	GRB2	1418508_a_at 1449111_a_at	17171	-0.170	-0.4784	No
50	NCK1	1421487_a_at 1424543_at 1447271_at	17487	-0.209	-0.4909	No
51	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	18001	-0.278	-0.5119	No
52	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	18053	-0.285	-0.5115	No
53	KHDRBS1	1418628_at 1418630_at	18592	-0.374	-0.5327	Yes
54	SOS2	1452281_at	18613	-0.379	-0.5301	Yes
55	PTPN22	1417995_at 1442820_at	18622	-0.380	-0.5270	Yes
56	TRAT1	1427532_at 1437561_at	18697	-0.395	-0.5267	Yes
57	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	18818	-0.421	-0.5283	Yes
58	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	18829	-0.424	-0.5248	Yes
59	PTPN12	1422045_a_at 1439705_at 1450478_a_at 1450479_x_at 1455105_at 1459459_at	18893	-0.438	-0.5236	Yes
60	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	18974	-0.459	-0.5230	Yes
61	SOS1	1421884_at 1421885_at 1421886_at	18996	-0.463	-0.5197	Yes
62	STAT5A	1421469_a_at 1450259_a_at	19066	-0.479	-0.5184	Yes
63	RAPGEF1	1421146_at 1427006_at 1441386_at	19197	-0.510	-0.5196	Yes
64	WAS	1419631_at	19333	-0.543	-0.5208	Yes
65	FYB	1452117_a_at	19433	-0.570	-0.5200	Yes
66	LIME1	1416869_x_at 1437589_x_at 1448500_a_at	19553	-0.608	-0.5198	Yes
67	SH2D3C	1415886_at	19577	-0.615	-0.5152	Yes
68	CD3D	1422828_at	19644	-0.636	-0.5123	Yes
69	CISH	1448724_at	19656	-0.640	-0.5068	Yes
70	DBNL	1460334_at	19671	-0.646	-0.5015	Yes
71	GRAP2	1456432_at	19875	-0.712	-0.5042	Yes
72	SH2D2A	1449105_at	19969	-0.749	-0.5015	Yes
73	PTPN6	1456694_x_at 1460188_at	20072	-0.789	-0.4988	Yes
74	VAV3	1417122_at 1417123_at 1446795_at 1448600_s_at 1458630_at	20163	-0.833	-0.4952	Yes
75	LAX1	1438687_at	20166	-0.836	-0.4875	Yes
76	FOS	1423100_at	20289	-0.888	-0.4849	Yes
77	STAT5B	1422102_a_at 1422103_a_at	20380	-0.925	-0.4804	Yes
78	VAV1	1422932_a_at	20423	-0.958	-0.4735	Yes
79	VASP	1451097_at	20512	-1.003	-0.4682	Yes
80	ARHGDIB	1426454_at	20514	-1.004	-0.4589	Yes
81	SLA2	1437504_at 1451492_at	20516	-1.005	-0.4496	Yes
82	CD8A	1440164_x_at 1440811_x_at	20574	-1.039	-0.4426	Yes
83	CD3G	1419178_at	20668	-1.109	-0.4366	Yes
84	SH3BP2	1448328_at	20677	-1.112	-0.4266	Yes
85	WASF2	1438683_at	20693	-1.126	-0.4169	Yes
86	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	20749	-1.171	-0.4085	Yes
87	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	20788	-1.204	-0.3991	Yes
88	DEF6	1452796_at	20819	-1.232	-0.3890	Yes
89	PSTPIP1	1424560_at	20831	-1.237	-0.3780	Yes
90	PRKCQ	1426044_a_at	20851	-1.253	-0.3673	Yes
91	CBLB	1437304_at 1455082_at 1458469_at	20915	-1.305	-0.3580	Yes
92	ABI1	1423177_a_at 1423178_at 1450890_a_at	20944	-1.339	-0.3469	Yes
93	LCP2	1418641_at 1418642_at	21182	-1.674	-0.3422	Yes
94	GRAP	1429387_at	21185	-1.677	-0.3267	Yes
95	CREBBP	1434633_at 1435224_at 1436983_at 1444856_at 1457641_at 1459804_at	21262	-1.794	-0.3136	Yes
96	CARD11	1430257_at 1435996_at	21299	-1.844	-0.2981	Yes
97	SIT1	1418751_at	21323	-1.878	-0.2817	Yes
98	DNM2	1423629_at 1425135_a_at 1425136_x_at 1432004_a_at 1432005_at 1437938_x_at 1443150_at 1451057_x_at	21388	-1.983	-0.2663	Yes
99	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	21487	-2.153	-0.2508	Yes
100	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	21504	-2.182	-0.2312	Yes
101	CD5	1418353_at	21544	-2.273	-0.2119	Yes
102	DOCK2	1422808_s_at 1437282_at 1438334_at 1459382_at	21613	-2.525	-0.1916	Yes
103	TXK	1425785_a_at	21628	-2.579	-0.1683	Yes
104	CD4	1419696_at 1427779_a_at	21629	-2.582	-0.1443	Yes
105	CD247	1420716_at 1426079_at 1426396_at 1428059_at 1428060_at 1438392_at 1452539_a_at	21769	-3.129	-0.1217	Yes
106	EVL	1434920_a_at 1440885_at 1445957_at 1450106_a_at 1456453_at 1458889_at	21783	-3.294	-0.0917	Yes
107	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	21796	-3.373	-0.0609	Yes
108	PTK2B	1434653_at 1442437_at 1442927_at	21836	-3.576	-0.0295	Yes
109	PRKD2	1434333_a_at 1434334_at 1436589_x_at 1437509_x_at 1456075_at	21849	-3.670	0.0040	Yes