Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	NETPATH_BCR
Enrichment Score (ES)	-0.540929
Normalized Enrichment Score (NES)	-1.6644558
Nominal p-value	0.0
FDR q-value	0.18632911
FWER p-Value	0.911

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PLCG1	1435149_at 1450360_at	37	4.528	0.0396	No
2	CYCS	1422484_at 1445484_at	51	4.211	0.0774	No
3	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	243	2.703	0.0933	No
4	FYN	1417558_at 1441647_at 1448765_at	384	2.271	0.1076	No
5	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	525	1.916	0.1187	No
6	BLK	1422775_at	869	1.437	0.1161	No
7	PTPRC	1422124_a_at 1440165_at	1114	1.204	0.1159	No
8	BAX	1416837_at	1403	1.015	0.1119	No
9	RAP2A	1421574_at 1426965_at 1440473_at	1450	0.991	0.1189	No
10	CDK4	1422441_x_at	1506	0.963	0.1251	No
11	PIK3R2	1418463_at	2025	0.739	0.1081	No
12	MAP3K7	1419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at	2595	0.574	0.0873	No
13	MAPKAPK2	1426648_at	2765	0.533	0.0844	No
14	CCNE1	1416492_at 1441910_x_at	2955	0.495	0.0802	No
15	CD72	1426112_a_at	3223	0.448	0.0721	No
16	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	3656	0.391	0.0559	No
17	CD79A	1418830_at	3670	0.389	0.0588	No
18	DOK3	1418096_at	3773	0.379	0.0576	No
19	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	4014	0.353	0.0498	No
20	BLNK	1451780_at	4193	0.337	0.0447	No
21	CD19	1450570_a_at	4551	0.309	0.0312	No
22	RPS6KA1	1416896_at	5001	0.282	0.0132	No
23	PIK3AP1	1421285_at 1429831_at	5155	0.275	0.0087	No
24	ELK1	1421896_at 1421897_at 1446390_at	5676	0.250	-0.0129	No
25	BTK	1422755_at	5693	0.249	-0.0113	No
26	RPS6	1453466_at	6085	0.231	-0.0272	No
27	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	6119	0.230	-0.0266	No
28	RPS6KB1	1428849_at 1446376_at 1454956_at 1457562_at 1459951_at 1460705_at	6240	0.226	-0.0300	No
29	LAT2	1426169_a_at	6453	0.218	-0.0377	No
30	CDK7	1424257_at 1439511_at 1451741_a_at 1458987_at	6516	0.215	-0.0386	No
31	PPP3R1	1421786_at 1433591_at 1450368_a_at	6792	0.204	-0.0494	No
32	CD22	1419768_at 1419769_at 1445222_at	7656	0.174	-0.0873	No
33	FCGR2B	1435476_a_at 1435477_s_at 1447622_at 1451941_a_at 1455332_x_at	8308	0.155	-0.1158	No
34	MAPK4	1435367_at	8479	0.150	-0.1222	No
35	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	9007	0.135	-0.1451	No
36	PRKD1	1422673_at	9487	0.122	-0.1660	No
37	CBL	1434829_at 1446608_at 1450457_at 1455886_at	9569	0.120	-0.1686	No
38	ATP2B4	1445701_at	9889	0.111	-0.1822	No
39	CD81	1416330_at	9895	0.111	-0.1814	No
40	PIP5K1C	1450228_a_at	10077	0.106	-0.1887	No
41	RASGRP3	1438030_at 1438031_at	11086	0.081	-0.2342	No
42	DOK1	1417790_at	11099	0.081	-0.2340	No
43	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	11135	0.080	-0.2349	No
44	CR2	1425289_a_at	11217	0.078	-0.2379	No
45	ZAP70	1422701_at 1439749_at 1440178_x_at	11615	0.067	-0.2555	No
46	PTPN11	1421196_at 1427699_a_at 1451225_at	12683	0.041	-0.3040	No
47	PLEKHA1	1417965_at 1443111_at	12898	0.036	-0.3135	No
48	MAPK8	1420931_at 1420932_at 1437045_at 1440856_at 1457936_at	13273	0.025	-0.3304	No
49	JUN	1417409_at 1448694_at	13314	0.024	-0.3320	No
50	BCAR1	1439388_s_at 1450622_at	14577	-0.017	-0.3897	No
51	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	15150	-0.039	-0.4156	No
52	GSK3A	1435638_at	16002	-0.081	-0.4538	No
53	PTPN18	1419125_at 1444894_at	16076	-0.086	-0.4564	No
54	SHC1	1422853_at 1422854_at	16122	-0.088	-0.4577	No
55	REL	1420710_at	16411	-0.106	-0.4699	No
56	GTF2I	1431675_a_at 1431676_x_at	16496	-0.112	-0.4727	No
57	NFATC1	1417621_at 1425761_a_at 1428479_at 1447084_at 1447085_s_at	16559	-0.117	-0.4745	No
58	GAB1	1417693_a_at 1417694_at 1448814_at	16627	-0.123	-0.4764	No
59	HCK	1446553_at 1449455_at	16728	-0.130	-0.4798	No
60	GRB2	1418508_a_at 1449111_a_at	17171	-0.170	-0.4985	No
61	CDK6	1435338_at 1440040_at 1455287_at 1460291_at	17266	-0.181	-0.5012	No
62	CHUK	1417091_at 1428210_s_at 1451383_a_at	17435	-0.202	-0.5071	No
63	PRKCE	1437860_at 1437861_s_at 1442609_at 1444649_at 1449956_at 1452878_at	17444	-0.203	-0.5056	No
64	NCK1	1421487_a_at 1424543_at 1447271_at	17487	-0.209	-0.5056	No
65	ITPR2	1421678_at 1424833_at 1424834_s_at 1427287_s_at 1427693_at 1444418_at 1444551_at 1447328_at	17601	-0.226	-0.5087	No
66	RB1	1417850_at 1441494_at 1444400_at 1444454_at 1457447_at	17944	-0.270	-0.5219	No
67	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	18001	-0.278	-0.5220	No
68	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	18053	-0.285	-0.5217	No
69	CDK2	1416873_a_at 1447617_at	18435	-0.345	-0.5360	No
70	CCNA2	1417910_at 1417911_at	18439	-0.346	-0.5330	No
71	SOS2	1452281_at	18613	-0.379	-0.5375	Yes
72	MAPK3	1427060_at	18642	-0.385	-0.5352	Yes
73	BCL2L11	1426334_a_at 1435448_at 1435449_at 1456005_a_at 1456006_at 1459794_at	18691	-0.394	-0.5338	Yes
74	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	18818	-0.421	-0.5358	Yes
75	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	18829	-0.424	-0.5324	Yes
76	DAPP1	1421936_at 1421937_at 1447337_at	18854	-0.431	-0.5295	Yes
77	HCLS1	1418842_at	18958	-0.455	-0.5301	Yes
78	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	18974	-0.459	-0.5266	Yes
79	SOS1	1421884_at 1421885_at 1421886_at	18996	-0.463	-0.5234	Yes
80	ACTR3	1426392_a_at 1434968_a_at 1452051_at	19009	-0.466	-0.5197	Yes
81	RAPGEF1	1421146_at 1427006_at 1441386_at	19197	-0.510	-0.5236	Yes
82	WAS	1419631_at	19333	-0.543	-0.5248	Yes
83	HDAC5	1415743_at	19351	-0.547	-0.5206	Yes
84	IKBKB	1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at	19447	-0.577	-0.5197	Yes
85	ACTR2	1441660_at 1452587_at	19498	-0.591	-0.5166	Yes
86	LIME1	1416869_x_at 1437589_x_at 1448500_a_at	19553	-0.608	-0.5135	Yes
87	CASP9	1426125_a_at 1437537_at 1457816_at	19786	-0.679	-0.5179	Yes
88	RELA	1419536_a_at	20015	-0.767	-0.5214	Yes
89	PTPN6	1456694_x_at 1460188_at	20072	-0.789	-0.5168	Yes
90	VAV1	1422932_a_at	20423	-0.958	-0.5241	Yes
91	IKBKG	1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at	20443	-0.967	-0.5161	Yes
92	SLA2	1437504_at 1451492_at	20516	-1.005	-0.5102	Yes
93	PPP3CA	1426401_at 1438478_a_at 1440051_at 1452056_s_at 1458495_at	20582	-1.046	-0.5037	Yes
94	ATF2	1426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at	20657	-1.100	-0.4970	Yes
95	SH3BP2	1448328_at	20677	-1.112	-0.4878	Yes
96	BCL2	1422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at	20696	-1.127	-0.4783	Yes
97	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	20749	-1.171	-0.4700	Yes
98	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	20788	-1.204	-0.4608	Yes
99	PDK2	1448825_at	20844	-1.246	-0.4519	Yes
100	PRKCQ	1426044_a_at	20851	-1.253	-0.4408	Yes
101	CBLB	1437304_at 1455082_at 1458469_at	20915	-1.305	-0.4317	Yes
102	CSK	1423518_at 1439744_at	21063	-1.495	-0.4248	Yes
103	LCP2	1418641_at 1418642_at	21182	-1.674	-0.4150	Yes
104	CD79B	1417640_at	21236	-1.761	-0.4013	Yes
105	CCND3	1415907_at 1437584_at 1444323_at 1446567_at 1447434_at 1457549_at	21260	-1.792	-0.3860	Yes
106	CARD11	1430257_at 1435996_at	21299	-1.844	-0.3710	Yes
107	NFATC3	1419976_s_at 1452497_a_at	21381	-1.965	-0.3567	Yes
108	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	21477	-2.135	-0.3416	Yes
109	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	21487	-2.153	-0.3224	Yes
110	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	21504	-2.182	-0.3032	Yes
111	CD5	1418353_at	21544	-2.273	-0.2843	Yes
112	PRKCD	1422847_a_at 1442256_at	21582	-2.392	-0.2641	Yes
113	CASP7	1426062_a_at 1448659_at	21669	-2.720	-0.2433	Yes
114	BCL6	1421818_at 1450381_a_at	21730	-2.913	-0.2194	Yes
115	PDPK1	1415729_at 1416501_at 1459775_at 1459776_x_at	21761	-3.077	-0.1928	Yes
116	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	21796	-3.373	-0.1635	Yes
117	GSK3B	1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at	21811	-3.432	-0.1329	Yes
118	CCND2	1416122_at 1416123_at 1416124_at 1430127_a_at 1434745_at 1448229_s_at 1455956_x_at	21827	-3.509	-0.1015	Yes
119	PTK2B	1434653_at 1442437_at 1442927_at	21836	-3.576	-0.0693	Yes
120	VAV2	1421272_at 1435065_x_at 1435244_at 1458758_at	21871	-3.956	-0.0347	Yes
121	TEC	1441524_at 1460204_at	21881	-4.130	0.0025	Yes