Details for gene set V$FREAC3

Table: GSEA Results Summary

Dataset	set04_transDMproB_versus_transDMpreB
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	V$FREAC3_01
Enrichment Score (ES)	0.47382483
Normalized Enrichment Score (NES)	1.6726419
Nominal p-value	0.0
FDR q-value	0.055509914
FWER p-Value	0.544

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	IMPDH1	16	28.243	0.0554	Yes
2	TCF7L2	59	19.757	0.0925	Yes
3	MMP11	81	18.609	0.1285	Yes
4	CDKN1A	100	17.229	0.1619	Yes
5	LEF1	114	16.418	0.1939	Yes
6	GFRA1	120	16.047	0.2256	Yes
7	SQSTM1	189	13.689	0.2492	Yes
8	GRB7	241	12.611	0.2716	Yes
9	LAMB3	269	12.143	0.2944	Yes
10	TIAM1	483	9.458	0.3017	Yes
11	MBNL2	490	9.423	0.3201	Yes
12	ZFP28	628	8.180	0.3290	Yes
13	EFNA5	750	7.452	0.3373	Yes
14	LCP2	768	7.342	0.3510	Yes
15	BCL11A	818	7.061	0.3624	Yes
16	THRA	838	6.988	0.3753	Yes
17	PIP5K2A	902	6.727	0.3853	Yes
18	IDH1	927	6.636	0.3973	Yes
19	HOXA9	932	6.609	0.4102	Yes
20	TNFRSF19	1056	6.003	0.4155	Yes
21	TGFB1	1133	5.662	0.4227	Yes
22	CDKN1C	1222	5.357	0.4286	Yes
23	SUPT3H	1247	5.284	0.4378	Yes
24	PPP1R12A	1258	5.250	0.4478	Yes
25	SH3GL3	1266	5.222	0.4578	Yes
26	DLGAP4	1481	4.635	0.4554	Yes
27	HOXA4	1591	4.346	0.4582	Yes
28	UTX	1610	4.282	0.4658	Yes
29	TCF15	1619	4.260	0.4738	Yes
30	PAK1	2078	3.295	0.4556	No
31	BCL9	2290	2.952	0.4500	No
32	ETV1	2339	2.859	0.4531	No
33	EYA1	2380	2.802	0.4565	No
34	PELI2	2448	2.708	0.4583	No
35	CDK6	2525	2.634	0.4594	No
36	DCX	2725	2.407	0.4535	No
37	HOXC5	2779	2.353	0.4553	No
38	CALD1	2832	2.299	0.4570	No
39	POU2F1	2859	2.270	0.4602	No
40	TBXAS1	2924	2.198	0.4611	No
41	FGB	2936	2.190	0.4648	No
42	ITGB6	3094	2.060	0.4604	No
43	TBC1D17	3241	1.944	0.4564	No
44	LUC7L2	3374	1.832	0.4529	No
45	TRIM8	3449	1.785	0.4525	No
46	PHF15	3782	1.567	0.4376	No
47	DVL2	3837	1.535	0.4377	No
48	CNNM3	4014	1.432	0.4310	No
49	TRPC4	4084	1.392	0.4301	No
50	GNAO1	4157	1.353	0.4289	No
51	MAP4K5	4210	1.327	0.4287	No
52	MITF	4405	1.227	0.4206	No
53	HOXA11	4567	1.154	0.4142	No
54	ULK1	4747	1.086	0.4067	No
55	CD68	4781	1.068	0.4070	No
56	CITED2	5036	0.967	0.3952	No
57	ICAM5	5099	0.943	0.3937	No
58	RAB3IP	5300	0.866	0.3846	No
59	EIF4EBP2	5736	0.702	0.3624	No
60	SESTD1	5815	0.677	0.3595	No
61	POGZ	5873	0.657	0.3578	No
62	HOXA3	5879	0.657	0.3588	No
63	ANGPT2	5975	0.629	0.3549	No
64	SLC38A3	6011	0.616	0.3542	No
65	SCG2	6171	0.572	0.3468	No
66	FGF9	6230	0.552	0.3447	No
67	CHN1	6480	0.474	0.3322	No
68	MYL1	6552	0.452	0.3292	No
69	BAMBI	6651	0.428	0.3248	No
70	NOG	6696	0.416	0.3232	No
71	ZIC5	6873	0.363	0.3144	No
72	CPNE1	7032	0.314	0.3065	No
73	SIM1	7049	0.309	0.3062	No
74	GCG	7050	0.309	0.3068	No
75	SCRN3	7082	0.301	0.3057	No
76	LHX5	7113	0.293	0.3047	No
77	NEUROG1	7251	0.253	0.2978	No
78	BRUNOL6	7388	0.212	0.2908	No
79	HOXA2	7432	0.198	0.2889	No
80	NTN1	7460	0.190	0.2878	No
81	SPDEF	7583	0.149	0.2815	No
82	ZIC2	7632	0.137	0.2792	No
83	PCF11	7692	0.121	0.2762	No
84	LHX9	7703	0.116	0.2759	No
85	BUB3	8006	0.028	0.2596	No
86	MRGPRF	8273	-0.047	0.2453	No
87	PURA	8623	-0.136	0.2266	No
88	KCTD4	8737	-0.165	0.2208	No
89	NEUROD2	8773	-0.174	0.2193	No
90	ESRRG	8830	-0.188	0.2166	No
91	ETV4	8890	-0.201	0.2138	No
92	BRMS1	9104	-0.252	0.2028	No
93	SLC35A2	9201	-0.277	0.1981	No
94	HOXA10	9464	-0.340	0.1846	No
95	PPP1CB	9879	-0.446	0.1631	No
96	GSH1	9953	-0.464	0.1600	No
97	TGFB3	10184	-0.524	0.1486	No
98	PHOX2B	10261	-0.547	0.1456	No
99	LRAT	10310	-0.558	0.1441	No
100	OTX2	10429	-0.588	0.1389	No
101	VAX1	10464	-0.595	0.1382	No
102	OTP	10614	-0.631	0.1314	No
103	EFEMP1	10655	-0.640	0.1305	No
104	RKHD3	10790	-0.670	0.1246	No
105	LGI1	10823	-0.678	0.1242	No
106	ATOH8	11123	-0.744	0.1095	No
107	PAPPA	11156	-0.755	0.1093	No
108	PLUNC	11213	-0.767	0.1077	No
109	LRP2	11218	-0.768	0.1091	No
110	EGR2	11225	-0.769	0.1103	No
111	PCSK1	11275	-0.781	0.1092	No
112	SLITRK6	11372	-0.806	0.1056	No
113	ATP5G2	11669	-0.882	0.0913	No
114	PPIL5	11988	-0.967	0.0760	No
115	C1QTNF6	12024	-0.977	0.0760	No
116	ARID4A	12109	-1.000	0.0735	No
117	AGPAT4	12371	-1.070	0.0615	No
118	HERPUD1	12375	-1.070	0.0634	No
119	FOSL2	12675	-1.163	0.0496	No
120	MAFF	12717	-1.175	0.0497	No
121	FBXO40	12969	-1.251	0.0386	No
122	TCERG1L	12976	-1.255	0.0407	No
123	ZHX2	13005	-1.264	0.0417	No
124	HOXA13	13095	-1.289	0.0395	No
125	TTR	13132	-1.301	0.0401	No
126	NRG1	13205	-1.321	0.0389	No
127	HOXC12	13220	-1.328	0.0408	No
128	BCL11B	13246	-1.337	0.0421	No
129	GRIK3	13280	-1.348	0.0430	No
130	BNC2	13350	-1.373	0.0420	No
131	DTNA	13594	-1.457	0.0317	No
132	SDK2	13751	-1.506	0.0262	No
133	FOXP2	13796	-1.525	0.0269	No
134	DCN	14232	-1.691	0.0067	No
135	GPR1	14339	-1.735	0.0044	No
136	PRICKLE2	14657	-1.882	-0.0090	No
137	FAP	14671	-1.890	-0.0059	No
138	PRDM1	14786	-1.938	-0.0083	No
139	AKT2	14825	-1.957	-0.0064	No
140	A2BP1	14906	-2.002	-0.0068	No
141	TRERF1	14999	-2.046	-0.0077	No
142	TIMM9	15058	-2.078	-0.0067	No
143	HOXC8	15219	-2.170	-0.0110	No
144	ARTN	15242	-2.181	-0.0079	No
145	MRVI1	15326	-2.234	-0.0079	No
146	AKT1S1	15371	-2.265	-0.0058	No
147	TIAL1	15496	-2.348	-0.0078	No
148	TBX4	15650	-2.455	-0.0112	No
149	POU3F3	15720	-2.510	-0.0099	No
150	RASSF6	16073	-2.844	-0.0234	No
151	NTRK3	16280	-3.049	-0.0284	No
152	MCM7	16549	-3.369	-0.0362	No
153	BRUNOL4	16642	-3.515	-0.0342	No
154	AP4M1	16680	-3.570	-0.0291	No
155	TRAF3	16727	-3.648	-0.0243	No
156	PPP1R10	16912	-3.938	-0.0264	No
157	NEDD4	17006	-4.114	-0.0233	No
158	XPO7	17144	-4.405	-0.0219	No
159	PRPF39	17224	-4.594	-0.0171	No
160	MPP6	17316	-4.802	-0.0124	No
161	LMO4	17762	-6.261	-0.0240	No
162	FSTL1	18298	-9.456	-0.0342	No
163	EMP3	18487	-12.090	-0.0203	No
164	MRPS18B	18534	-13.647	0.0044	No