Details for gene set V$FREAC2

Table: GSEA Results Summary

Dataset	set04_transDMproB_versus_transDMpreB
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	V$FREAC2_01
Enrichment Score (ES)	0.53725755
Normalized Enrichment Score (NES)	1.912657
Nominal p-value	0.0
FDR q-value	0.015915012
FWER p-Value	0.023

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	EMP1	0	60.375	0.1011	Yes
2	PRKCH	92	17.715	0.1258	Yes
3	CDKN1A	100	17.229	0.1543	Yes
4	MARCKS	141	15.219	0.1776	Yes
5	SQSTM1	189	13.689	0.1980	Yes
6	NDRG1	200	13.450	0.2200	Yes
7	SMAD1	266	12.210	0.2369	Yes
8	HBP1	346	10.961	0.2509	Yes
9	SEPP1	361	10.781	0.2682	Yes
10	ERG	405	10.291	0.2831	Yes
11	TIAM1	483	9.458	0.2948	Yes
12	MBNL2	490	9.423	0.3103	Yes
13	ABTB1	491	9.420	0.3260	Yes
14	MMP13	588	8.467	0.3350	Yes
15	RAB6IP1	658	7.944	0.3446	Yes
16	HOXB4	664	7.921	0.3576	Yes
17	KLF3	743	7.475	0.3658	Yes
18	NFIX	759	7.390	0.3774	Yes
19	ETV5	784	7.256	0.3883	Yes
20	DUSP1	797	7.185	0.3996	Yes
21	BCL11A	818	7.061	0.4104	Yes
22	THRA	838	6.988	0.4210	Yes
23	LRP5	897	6.757	0.4292	Yes
24	SMAD5	952	6.520	0.4372	Yes
25	PPAP2B	1091	5.848	0.4395	Yes
26	CDKN1C	1222	5.357	0.4414	Yes
27	IGF1	1226	5.346	0.4502	Yes
28	AXL	1263	5.231	0.4570	Yes
29	SH3GL3	1266	5.222	0.4657	Yes
30	MBNL1	1300	5.110	0.4724	Yes
31	TBCC	1389	4.867	0.4758	Yes
32	UHRF2	1420	4.791	0.4822	Yes
33	NAP1L3	1463	4.685	0.4878	Yes
34	BCAS3	1509	4.553	0.4929	Yes
35	KBTBD2	1575	4.401	0.4968	Yes
36	STK3	1581	4.367	0.5038	Yes
37	UTX	1610	4.282	0.5095	Yes
38	TCF15	1619	4.260	0.5162	Yes
39	EGLN1	1779	3.904	0.5141	Yes
40	PPM1D	1793	3.877	0.5199	Yes
41	CHD2	1845	3.767	0.5234	Yes
42	HIBADH	1964	3.507	0.5229	Yes
43	PAK1	2078	3.295	0.5223	Yes
44	DHRS3	2137	3.202	0.5245	Yes
45	ZADH2	2195	3.119	0.5266	Yes
46	BCL9	2290	2.952	0.5265	Yes
47	EYA1	2380	2.802	0.5263	Yes
48	PELI2	2448	2.708	0.5272	Yes
49	HEBP2	2455	2.701	0.5314	Yes
50	EXT1	2517	2.642	0.5326	Yes
51	ELMO1	2524	2.634	0.5366	Yes
52	VPS52	2724	2.409	0.5299	Yes
53	HIPK1	2744	2.390	0.5329	Yes
54	DUSP4	2783	2.350	0.5347	Yes
55	CALD1	2832	2.299	0.5360	Yes
56	BRIP1	2913	2.212	0.5353	Yes
57	DNAJB12	2946	2.180	0.5373	Yes
58	RBM4	3145	2.017	0.5299	No
59	NGEF	3159	2.008	0.5326	No
60	IRS4	3283	1.913	0.5291	No
61	PITPNC1	3359	1.846	0.5281	No
62	UBE2H	3495	1.747	0.5237	No
63	IL6ST	3579	1.698	0.5221	No
64	RASD1	3627	1.669	0.5223	No
65	TCF1	3628	1.668	0.5251	No
66	NRAP	3631	1.667	0.5278	No
67	PLAG1	3769	1.574	0.5230	No
68	PHF15	3782	1.567	0.5250	No
69	FOXB1	3943	1.470	0.5187	No
70	TRPC4	4084	1.392	0.5135	No
71	MAP4K5	4210	1.327	0.5089	No
72	PITX2	4241	1.312	0.5095	No
73	MITF	4405	1.227	0.5027	No
74	HOXA11	4567	1.154	0.4959	No
75	RORA	4661	1.116	0.4927	No
76	ROR1	4908	1.019	0.4811	No
77	VIT	4980	0.986	0.4789	No
78	CITED2	5036	0.967	0.4775	No
79	STOML3	5202	0.907	0.4701	No
80	BMP5	5649	0.731	0.4471	No
81	FGF12	5820	0.676	0.4390	No
82	CD109	6006	0.617	0.4300	No
83	SLC38A3	6011	0.616	0.4309	No
84	KCTD15	6140	0.583	0.4249	No
85	FGF9	6230	0.552	0.4210	No
86	SYT1	6540	0.456	0.4050	No
87	GREM1	6978	0.328	0.3818	No
88	CPNE1	7032	0.314	0.3795	No
89	HHIP	7066	0.305	0.3782	No
90	SCRN3	7082	0.301	0.3779	No
91	PLCB2	7228	0.261	0.3705	No
92	GNPNAT1	7283	0.243	0.3680	No
93	BRUNOL6	7388	0.212	0.3627	No
94	PCF11	7692	0.121	0.3464	No
95	PIK3C2A	7753	0.100	0.3434	No
96	NFIB	7907	0.060	0.3352	No
97	HOXD9	7932	0.052	0.3339	No
98	MRGPRF	8273	-0.047	0.3156	No
99	CHCHD7	8323	-0.061	0.3130	No
100	RAD21	8607	-0.132	0.2979	No
101	PURA	8623	-0.136	0.2973	No
102	RBM16	9050	-0.241	0.2746	No
103	HAND2	9106	-0.253	0.2721	No
104	WEE1	9178	-0.271	0.2687	No
105	EPHB3	9634	-0.379	0.2446	No
106	EZH1	9888	-0.450	0.2316	No
107	ADAM12	9939	-0.462	0.2297	No
108	FBXW7	9957	-0.465	0.2296	No
109	RASGEF1B	10113	-0.507	0.2220	No
110	TGFB3	10184	-0.524	0.2191	No
111	SLITRK5	10468	-0.595	0.2047	No
112	OFCC1	10473	-0.596	0.2055	No
113	CGA	10659	-0.641	0.1966	No
114	ENPP2	10681	-0.645	0.1965	No
115	NNT	10722	-0.652	0.1954	No
116	PROX1	10777	-0.669	0.1936	No
117	PAPPA	11156	-0.755	0.1744	No
118	BMP2	11180	-0.760	0.1744	No
119	PLUNC	11213	-0.767	0.1739	No
120	SLC34A3	11261	-0.777	0.1727	No
121	PCSK1	11275	-0.781	0.1733	No
122	EN2	11375	-0.807	0.1693	No
123	NFRKB	11498	-0.841	0.1641	No
124	SIN3A	11586	-0.863	0.1608	No
125	CXXC5	11661	-0.881	0.1583	No
126	DSTN	11724	-0.897	0.1564	No
127	RARA	11825	-0.924	0.1525	No
128	GPRC5C	12030	-0.980	0.1431	No
129	ARID4A	12109	-1.000	0.1405	No
130	MLLT6	12275	-1.044	0.1333	No
131	EVI1	12416	-1.086	0.1276	No
132	GPR4	12497	-1.108	0.1251	No
133	FOSL2	12675	-1.163	0.1174	No
134	MAFF	12717	-1.175	0.1172	No
135	PCDH18	12801	-1.198	0.1147	No
136	BDNF	12829	-1.208	0.1152	No
137	CD2AP	12837	-1.211	0.1169	No
138	DHX8	12854	-1.215	0.1181	No
139	NRG1	13205	-1.321	0.1013	No
140	HOXC12	13220	-1.328	0.1028	No
141	BCL11B	13246	-1.337	0.1036	No
142	HABP4	13434	-1.399	0.0958	No
143	CDX2	13481	-1.416	0.0957	No
144	ACCN1	13522	-1.431	0.0959	No
145	KLF12	13523	-1.432	0.0983	No
146	SLC2A4	13569	-1.447	0.0983	No
147	DTNA	13594	-1.457	0.0995	No
148	FOXP2	13796	-1.525	0.0911	No
149	MCC	13818	-1.536	0.0925	No
150	CLPX	14055	-1.622	0.0825	No
151	FGF20	14237	-1.693	0.0755	No
152	POU3F4	14260	-1.702	0.0771	No
153	SYT6	14656	-1.881	0.0589	No
154	TPP2	14658	-1.882	0.0620	No
155	PRDM1	14786	-1.938	0.0583	No
156	AKT2	14825	-1.957	0.0595	No
157	MID1	14907	-2.003	0.0585	No
158	CLDN8	15072	-2.082	0.0531	No
159	HOXC8	15219	-2.170	0.0488	No
160	EN1	15285	-2.206	0.0490	No
161	MRVI1	15326	-2.234	0.0505	No
162	ATBF1	15464	-2.327	0.0470	No
163	HR	15521	-2.365	0.0479	No
164	TBX4	15650	-2.455	0.0451	No
165	POU3F3	15720	-2.510	0.0456	No
166	AP1G2	15813	-2.603	0.0449	No
167	E2F3	16497	-3.306	0.0134	No
168	MCM7	16549	-3.369	0.0163	No
169	PDE7A	16602	-3.454	0.0193	No
170	AP4M1	16680	-3.570	0.0211	No
171	HOXC4	16736	-3.657	0.0242	No
172	RPS18	16916	-3.948	0.0211	No
173	STOML2	17231	-4.613	0.0118	No
174	MPP6	17316	-4.802	0.0153	No
175	DSG4	17377	-4.982	0.0204	No
176	TOB1	17459	-5.211	0.0247	No
177	DOCK3	17549	-5.495	0.0291	No
178	LMO4	17762	-6.261	0.0281	No
179	CPN1	18427	-10.870	0.0103	No