Details for gene set DNA

Table: GSEA Results Summary

Dataset	set04_transDMproB_versus_LMproB
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_neg
GeneSet	DNA_REPAIR
Enrichment Score (ES)	-0.45448184
Normalized Enrichment Score (NES)	-1.912455
Nominal p-value	0.0
FDR q-value	0.04488703
FWER p-Value	0.425

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MSH5	154	3.949	0.0127	No
2	LIG4	157	3.931	0.0335	No
3	XRCC4	183	3.781	0.0523	No
4	UBE2A	291	3.364	0.0644	No
5	SUMO1	775	2.511	0.0516	No
6	CDKN2D	886	2.387	0.0584	No
7	CIB1	1035	2.268	0.0625	No
8	ERCC8	1068	2.247	0.0727	No
9	UBE2N	1355	2.064	0.0682	No
10	MSH6	1681	1.874	0.0606	No
11	DDB1	1819	1.814	0.0629	No
12	ASF1A	2000	1.725	0.0623	No
13	ERCC4	2329	1.602	0.0531	No
14	ATXN3	2565	1.526	0.0486	No
15	RAD21	2736	1.470	0.0472	No
16	RAD51L1	2761	1.459	0.0537	No
17	PNKP	2959	1.394	0.0504	No
18	RAD17	3013	1.378	0.0549	No
19	HMGB2	3135	1.340	0.0555	No
20	ATM	3638	1.186	0.0347	No
21	GADD45G	3647	1.183	0.0405	No
22	MNAT1	3798	1.143	0.0385	No
23	UBE2B	3808	1.138	0.0441	No
24	MSH3	3824	1.135	0.0493	No
25	FANCC	4074	1.077	0.0416	No
26	MUTYH	4986	0.875	-0.0030	No
27	SMUG1	5191	0.835	-0.0096	No
28	GADD45A	5285	0.815	-0.0102	No
29	XRCC6	5288	0.814	-0.0060	No
30	HMGB1	5302	0.811	-0.0024	No
31	APTX	5422	0.784	-0.0047	No
32	BTG2	5861	0.692	-0.0247	No
33	FEN1	5919	0.680	-0.0241	No
34	TREX2	6406	0.590	-0.0472	No
35	SOD1	6486	0.576	-0.0484	No
36	XRCC2	7529	0.380	-0.1027	No
37	POLA1	7588	0.368	-0.1039	No
38	MPG	7665	0.353	-0.1061	No
39	RAD23B	7714	0.344	-0.1069	No
40	RUVBL2	7879	0.315	-0.1141	No
41	ALKBH1	7924	0.307	-0.1148	No
42	RAD1	8160	0.265	-0.1261	No
43	FANCA	8327	0.235	-0.1338	No
44	HUS1	8335	0.234	-0.1330	No
45	RFC3	8392	0.226	-0.1348	No
46	PMS1	8867	0.140	-0.1596	No
47	PMS2	9581	0.014	-0.1981	No
48	HTATIP	10286	-0.118	-0.2355	No
49	TNP1	10389	-0.138	-0.2403	No
50	IGHMBP2	10770	-0.205	-0.2597	No
51	ATR	10794	-0.209	-0.2599	No
52	XRCC3	11389	-0.323	-0.2902	No
53	POLH	11578	-0.358	-0.2985	No
54	XAB2	11617	-0.367	-0.2986	No
55	POLE2	11991	-0.438	-0.3164	No
56	REV1	12154	-0.471	-0.3227	No
57	RAD51C	12872	-0.613	-0.3581	No
58	POLG	13179	-0.677	-0.3711	No
59	UBE2V2	13435	-0.732	-0.3809	No
60	EXO1	13747	-0.808	-0.3935	No
61	MSH2	14083	-0.890	-0.4068	No
62	ERCC3	14137	-0.903	-0.4049	No
63	ATRX	14216	-0.923	-0.4042	No
64	WRNIP1	14346	-0.959	-0.4061	No
65	GTF2H4	14739	-1.064	-0.4216	No
66	RAD23A	14873	-1.100	-0.4229	No
67	RECQL	15123	-1.171	-0.4301	No
68	FANCG	15268	-1.211	-0.4315	No
69	POLL	15358	-1.239	-0.4297	No
70	OGG1	15818	-1.398	-0.4470	Yes
71	BRCA1	15837	-1.405	-0.4405	Yes
72	RAD52	15985	-1.464	-0.4407	Yes
73	NTHL1	16154	-1.533	-0.4416	Yes
74	CSNK1D	16188	-1.547	-0.4352	Yes
75	UNG	16214	-1.554	-0.4283	Yes
76	BRCA2	16426	-1.645	-0.4309	Yes
77	POLQ	16523	-1.692	-0.4271	Yes
78	TDG	16589	-1.718	-0.4214	Yes
79	ERCC1	16754	-1.814	-0.4207	Yes
80	RAD51	16891	-1.889	-0.4180	Yes
81	POLE	17055	-2.001	-0.4161	Yes
82	RPA1	17200	-2.124	-0.4126	Yes
83	BLM	17210	-2.133	-0.4017	Yes
84	MRE11A	17211	-2.133	-0.3904	Yes
85	RECQL5	17311	-2.213	-0.3840	Yes
86	LIG1	17428	-2.306	-0.3780	Yes
87	RAD9A	17496	-2.372	-0.3690	Yes
88	UPF1	17640	-2.521	-0.3633	Yes
89	LIG3	17653	-2.540	-0.3504	Yes
90	ERCC2	17660	-2.555	-0.3371	Yes
91	DDB2	17719	-2.609	-0.3264	Yes
92	GTF2H1	17736	-2.627	-0.3133	Yes
93	APEX1	17738	-2.629	-0.2993	Yes
94	RAD50	17930	-2.875	-0.2944	Yes
95	POLI	17938	-2.884	-0.2794	Yes
96	NBN	17973	-2.942	-0.2656	Yes
97	MLH1	17987	-2.959	-0.2505	Yes
98	ABL1	18084	-3.088	-0.2393	Yes
99	XPC	18146	-3.203	-0.2255	Yes
100	UBE2V1	18169	-3.244	-0.2095	Yes
101	ERCC5	18295	-3.572	-0.1972	Yes
102	VCP	18328	-3.709	-0.1792	Yes
103	RECQL4	18340	-3.739	-0.1599	Yes
104	SMC1A	18351	-3.769	-0.1404	Yes
105	PARP1	18383	-3.892	-0.1214	Yes
106	RAD54L	18448	-4.193	-0.1025	Yes
107	CSNK1E	18481	-4.377	-0.0810	Yes
108	POLD1	18575	-5.904	-0.0546	Yes
109	TP53	18610	-10.661	0.0003	Yes