Details for gene set ORGANELLE

Table: GSEA Results Summary

Dataset	set04_transDMproB_versus_DMpreB
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_neg
GeneSet	ORGANELLE_LUMEN
Enrichment Score (ES)	-0.5402592
Normalized Enrichment Score (NES)	-2.1596725
Nominal p-value	0.0
FDR q-value	0.0
FWER p-Value	0.0

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PPP1R9B	34	24.185	0.0141	No
2	HDAC7A	91	18.416	0.0232	No
3	TAP2	236	13.361	0.0242	No
4	GIT2	300	12.327	0.0289	No
5	ISG20	381	11.155	0.0318	No
6	EPC1	397	10.994	0.0383	No
7	SMARCD2	446	10.515	0.0426	No
8	MEN1	478	10.129	0.0476	No
9	ARNTL	485	10.085	0.0539	No
10	PPARGC1A	665	8.507	0.0498	No
11	ERCC2	737	8.125	0.0512	No
12	SMARCA4	836	7.548	0.0509	No
13	XRCC6	900	7.192	0.0522	No
14	PARP1	1223	5.832	0.0384	No
15	HCLS1	1234	5.791	0.0417	No
16	ATXN1	1347	5.374	0.0391	No
17	SMAD4	1551	4.811	0.0312	No
18	MDM2	1563	4.789	0.0338	No
19	EZH2	1576	4.762	0.0362	No
20	WRN	1579	4.748	0.0393	No
21	INTS6	1588	4.726	0.0420	No
22	CCNT1	1773	4.279	0.0347	No
23	RBM39	1781	4.268	0.0372	No
24	ETFB	1870	4.095	0.0350	No
25	PHF12	1877	4.077	0.0374	No
26	ASF1A	1982	3.857	0.0343	No
27	ABL1	2004	3.811	0.0356	No
28	NAP1L3	2005	3.809	0.0382	No
29	HDAC11	2039	3.759	0.0388	No
30	PMF1	2048	3.734	0.0409	No
31	DDX11	2133	3.573	0.0386	No
32	PML	2156	3.538	0.0398	No
33	HIPK2	2183	3.501	0.0406	No
34	RSF1	2210	3.471	0.0415	No
35	ARID1A	2251	3.402	0.0416	No
36	NCOA6	2343	3.229	0.0387	No
37	TRPC4AP	2381	3.164	0.0388	No
38	NAP1L4	2398	3.146	0.0400	No
39	ARID4A	2478	3.041	0.0377	No
40	MED12	2498	3.014	0.0386	No
41	NFYB	2550	2.924	0.0378	No
42	ZNF346	2563	2.908	0.0390	No
43	TOP2A	2613	2.845	0.0382	No
44	MYO6	2766	2.665	0.0317	No
45	SMARCD1	2912	2.487	0.0254	No
46	NR3C1	3088	2.317	0.0174	No
47	HSD3B2	3090	2.316	0.0188	No
48	NDUFA13	3115	2.288	0.0190	No
49	RELA	3122	2.279	0.0202	No
50	GTF3C2	3145	2.250	0.0205	No
51	GTF3C1	3206	2.183	0.0187	No
52	NFYA	3218	2.174	0.0195	No
53	RPL11	3225	2.165	0.0206	No
54	RPL35	3237	2.159	0.0214	No
55	RBPJ	3321	2.090	0.0183	No
56	MBTPS1	3361	2.053	0.0175	No
57	GTF3C5	3404	2.011	0.0165	No
58	ZNF638	3432	1.982	0.0163	No
59	ELF4	3504	1.931	0.0137	No
60	DEDD2	3611	1.848	0.0092	No
61	SHFM1	3640	1.824	0.0088	No
62	DYRK1A	3712	1.774	0.0061	No
63	PITX2	3728	1.764	0.0065	No
64	TOP1	3843	1.682	0.0013	No
65	CENPF	3918	1.627	-0.0016	No
66	TP53	3947	1.611	-0.0021	No
67	RPS7	3978	1.593	-0.0027	No
68	HDAC9	4085	1.532	-0.0075	No
69	HSP90B1	4250	1.435	-0.0155	No
70	NLRP5	4369	1.365	-0.0210	No
71	EXOSC10	4433	1.332	-0.0236	No
72	ELP4	4449	1.316	-0.0236	No
73	GLIS2	4452	1.310	-0.0228	No
74	RBBP5	4625	1.211	-0.0314	No
75	NCR1	4787	1.138	-0.0395	No
76	CHMP1A	4813	1.124	-0.0401	No
77	SRP68	4830	1.113	-0.0402	No
78	FGF18	4855	1.104	-0.0408	No
79	HDAC1	4932	1.069	-0.0443	No
80	KIN	5037	1.018	-0.0493	No
81	PHF21A	5088	0.999	-0.0514	No
82	RTCD1	5287	0.904	-0.0616	No
83	SFRS2IP	5338	0.881	-0.0637	No
84	ZNF148	5500	0.818	-0.0720	No
85	HDAC5	5554	0.791	-0.0744	No
86	PAX8	6047	0.604	-0.1009	No
87	POLA1	6048	0.604	-0.1005	No
88	HS3ST1	6091	0.584	-0.1024	No
89	RB1	6108	0.579	-0.1029	No
90	TEP1	6235	0.529	-0.1094	No
91	SMAD2	6395	0.473	-0.1178	No
92	NF2	6410	0.468	-0.1183	No
93	MPHOSPH1	6416	0.466	-0.1182	No
94	FIGLA	6606	0.399	-0.1283	No
95	HIF1A	6695	0.367	-0.1329	No
96	TCOF1	6825	0.324	-0.1397	No
97	SMARCD3	6927	0.290	-0.1450	No
98	UBTF	6961	0.280	-0.1467	No
99	SPTBN4	7075	0.239	-0.1527	No
100	CHAF1A	7230	0.188	-0.1610	No
101	PHB	7255	0.180	-0.1622	No
102	MRPS22	7329	0.158	-0.1661	No
103	GATM	7410	0.139	-0.1703	No
104	SAP30	7577	0.093	-0.1794	No
105	TOP2B	7800	0.017	-0.1915	No
106	ZBTB16	8046	-0.059	-0.2049	No
107	EPAS1	8238	-0.114	-0.2152	No
108	CALR	8545	-0.206	-0.2318	No
109	POLR3C	8568	-0.212	-0.2329	No
110	TAF13	8618	-0.227	-0.2354	No
111	SMARCA5	8631	-0.234	-0.2359	No
112	NAP1L2	8685	-0.251	-0.2386	No
113	FOXE3	8790	-0.285	-0.2441	No
114	RCN1	8848	-0.300	-0.2471	No
115	NDUFS1	8907	-0.316	-0.2500	No
116	POLQ	8953	-0.331	-0.2523	No
117	TAF4	9141	-0.382	-0.2622	No
118	OGG1	9190	-0.396	-0.2646	No
119	HDAC6	9250	-0.414	-0.2676	No
120	ING2	9252	-0.414	-0.2673	No
121	PITRM1	9333	-0.438	-0.2714	No
122	NFYC	9496	-0.485	-0.2800	No
123	ELL2	9518	-0.491	-0.2808	No
124	HMGA1	9531	-0.495	-0.2811	No
125	GCM1	9598	-0.515	-0.2844	No
126	ERCC5	9634	-0.524	-0.2860	No
127	PTF1A	9794	-0.571	-0.2943	No
128	DDX56	9862	-0.588	-0.2976	No
129	FMR1	9937	-0.610	-0.3012	No
130	PRM2	10066	-0.647	-0.3078	No
131	TOPBP1	10139	-0.666	-0.3113	No
132	MRPS36	10158	-0.671	-0.3118	No
133	PTBP1	10352	-0.724	-0.3219	No
134	DNAJB9	10452	-0.750	-0.3268	No
135	TAF6L	10720	-0.831	-0.3409	No
136	SNAPC4	10826	-0.855	-0.3460	No
137	TFIP11	10833	-0.857	-0.3458	No
138	CPSF3	10983	-0.897	-0.3534	No
139	EXOSC9	11297	-0.987	-0.3698	No
140	SP100	11408	-1.020	-0.3752	No
141	ATXN3	11553	-1.061	-0.3823	No
142	XPO1	11588	-1.069	-0.3835	No
143	MPHOSPH10	11797	-1.137	-0.3941	No
144	RPA1	11919	-1.172	-0.4000	No
145	ACTL6A	11994	-1.196	-0.4032	No
146	THRAP3	12073	-1.220	-0.4067	No
147	LRCH4	12204	-1.261	-0.4129	No
148	POLR2B	12304	-1.288	-0.4175	No
149	NOL4	12375	-1.311	-0.4205	No
150	NPM1	12452	-1.335	-0.4237	No
151	CASQ1	12512	-1.352	-0.4261	No
152	SMARCB1	12671	-1.402	-0.4338	No
153	PIN4	12782	-1.439	-0.4389	No
154	BNIP3	12876	-1.470	-0.4430	No
155	TIMM23	12922	-1.485	-0.4445	No
156	GTF2F1	13366	-1.640	-0.4676	No
157	MRPS16	13405	-1.653	-0.4686	No
158	NEK11	13495	-1.690	-0.4723	No
159	HSD3B1	13507	-1.694	-0.4718	No
160	SMC3	13679	-1.759	-0.4800	No
161	MRPL51	13767	-1.797	-0.4836	No
162	HDAC2	13780	-1.804	-0.4830	No
163	RPL36	13818	-1.819	-0.4839	No
164	POLI	13824	-1.822	-0.4829	No
165	DDX24	13831	-1.823	-0.4821	No
166	NUFIP1	13870	-1.843	-0.4829	No
167	HTATIP	14065	-1.927	-0.4923	No
168	EMG1	14119	-1.952	-0.4939	No
169	NUP98	14125	-1.955	-0.4929	No
170	SMUG1	14133	-1.959	-0.4919	No
171	HDAC3	14134	-1.959	-0.4906	No
172	TXNDC4	14245	-2.013	-0.4953	No
173	DNMT3A	14305	-2.046	-0.4972	No
174	DBT	14310	-2.048	-0.4961	No
175	DEDD	14328	-2.054	-0.4957	No
176	NOL3	14436	-2.107	-0.5001	No
177	NKX2-5	14496	-2.141	-0.5019	No
178	CS	14525	-2.160	-0.5020	No
179	NUDT21	14593	-2.191	-0.5042	No
180	EDF1	14645	-2.217	-0.5056	No
181	MRPS18C	14737	-2.270	-0.5090	No
182	GEMIN7	14776	-2.294	-0.5096	No
183	ACTB	14816	-2.319	-0.5102	No
184	POLH	14818	-2.320	-0.5087	No
185	NPAS2	14890	-2.359	-0.5111	No
186	RBM14	15005	-2.430	-0.5157	No
187	MED6	15013	-2.437	-0.5145	No
188	DDX54	15043	-2.454	-0.5144	No
189	HDAC8	15056	-2.461	-0.5135	No
190	SAP18	15103	-2.494	-0.5143	No
191	NCL	15287	-2.635	-0.5226	No
192	FOXF2	15315	-2.652	-0.5223	No
193	PPARGC1B	15358	-2.688	-0.5228	No
194	TAF10	15368	-2.693	-0.5216	No
195	MORF4L2	15433	-2.741	-0.5232	No
196	TAF7	15493	-2.785	-0.5246	No
197	MRPS21	15611	-2.886	-0.5291	No
198	CPSF1	15753	-3.016	-0.5348	No
199	RPL3	15853	-3.144	-0.5382	Yes
200	GRPEL1	15858	-3.147	-0.5363	Yes
201	BCKDK	15885	-3.171	-0.5357	Yes
202	IFI16	15905	-3.190	-0.5346	Yes
203	UBE2I	15919	-3.208	-0.5332	Yes
204	PRPF31	15929	-3.227	-0.5315	Yes
205	CLOCK	15937	-3.233	-0.5298	Yes
206	TAF9	15983	-3.278	-0.5301	Yes
207	TAF6	16053	-3.360	-0.5316	Yes
208	BCKDHA	16119	-3.433	-0.5329	Yes
209	NR6A1	16146	-3.466	-0.5321	Yes
210	MRPL52	16151	-3.474	-0.5300	Yes
211	GTF2H1	16160	-3.494	-0.5281	Yes
212	KPNA2	16164	-3.497	-0.5260	Yes
213	EED	16273	-3.647	-0.5295	Yes
214	OIP5	16311	-3.695	-0.5290	Yes
215	ATP5F1	16323	-3.717	-0.5272	Yes
216	APTX	16351	-3.758	-0.5262	Yes
217	OPA1	16360	-3.773	-0.5241	Yes
218	SLC29A2	16376	-3.795	-0.5224	Yes
219	CBX1	16401	-3.840	-0.5212	Yes
220	MCM7	16403	-3.842	-0.5187	Yes
221	TOPORS	16419	-3.870	-0.5170	Yes
222	POLR2A	16496	-3.999	-0.5185	Yes
223	CHAF1B	16554	-4.086	-0.5189	Yes
224	CDK9	16560	-4.094	-0.5165	Yes
225	TFB2M	16564	-4.101	-0.5140	Yes
226	RPP40	16575	-4.118	-0.5118	Yes
227	POLR3K	16580	-4.126	-0.5093	Yes
228	DNAJA3	16733	-4.422	-0.5147	Yes
229	BCKDHB	16780	-4.532	-0.5142	Yes
230	ALDH4A1	16782	-4.539	-0.5113	Yes
231	KLHL7	16786	-4.551	-0.5084	Yes
232	ASH2L	16796	-4.560	-0.5059	Yes
233	RPS19	16817	-4.600	-0.5040	Yes
234	NDUFAB1	16844	-4.660	-0.5023	Yes
235	TAF11	16875	-4.711	-0.5008	Yes
236	TAF5	16902	-4.758	-0.4991	Yes
237	MCRS1	16907	-4.766	-0.4962	Yes
238	MRPS15	16929	-4.811	-0.4942	Yes
239	TDG	16950	-4.843	-0.4920	Yes
240	TIMM44	17005	-4.960	-0.4917	Yes
241	SMARCC1	17019	-4.985	-0.4891	Yes
242	ILF2	17031	-5.027	-0.4864	Yes
243	ASNA1	17053	-5.069	-0.4842	Yes
244	HES6	17054	-5.072	-0.4809	Yes
245	ACADM	17063	-5.088	-0.4780	Yes
246	MRPL23	17176	-5.414	-0.4805	Yes
247	CHEK2	17195	-5.457	-0.4779	Yes
248	HTRA2	17254	-5.607	-0.4774	Yes
249	MRPL55	17319	-5.752	-0.4771	Yes
250	SURF6	17331	-5.791	-0.4738	Yes
251	NARG1	17335	-5.809	-0.4702	Yes
252	SMARCE1	17371	-5.927	-0.4682	Yes
253	HNRPK	17445	-6.158	-0.4681	Yes
254	MRPS28	17486	-6.297	-0.4661	Yes
255	TBP	17498	-6.354	-0.4625	Yes
256	ETFA	17502	-6.381	-0.4585	Yes
257	LMO4	17529	-6.463	-0.4556	Yes
258	HDAC10	17537	-6.487	-0.4517	Yes
259	ERCC3	17559	-6.558	-0.4485	Yes
260	SEP15	17583	-6.647	-0.4454	Yes
261	ACN9	17591	-6.678	-0.4414	Yes
262	MRPS12	17597	-6.703	-0.4372	Yes
263	YEATS4	17623	-6.789	-0.4341	Yes
264	WDR4	17651	-6.887	-0.4310	Yes
265	TRIM27	17676	-7.018	-0.4277	Yes
266	MED4	17686	-7.045	-0.4236	Yes
267	POP7	17699	-7.076	-0.4195	Yes
268	CIB1	17701	-7.081	-0.4149	Yes
269	GEMIN4	17706	-7.113	-0.4104	Yes
270	EXOSC1	17708	-7.121	-0.4058	Yes
271	POLR2E	17727	-7.209	-0.4020	Yes
272	SFRS2	17755	-7.315	-0.3987	Yes
273	NAP1L1	17756	-7.321	-0.3938	Yes
274	NOLC1	17759	-7.336	-0.3891	Yes
275	MRE11A	17765	-7.355	-0.3845	Yes
276	KRR1	17793	-7.500	-0.3810	Yes
277	POLG2	17807	-7.563	-0.3768	Yes
278	MRPS18A	17816	-7.611	-0.3722	Yes
279	NOLA3	17817	-7.613	-0.3671	Yes
280	MRPS11	17822	-7.639	-0.3623	Yes
281	TIMM50	17828	-7.647	-0.3575	Yes
282	RPP30	17842	-7.728	-0.3531	Yes
283	GTF3C4	17858	-7.795	-0.3488	Yes
284	U2AF1	17883	-7.920	-0.3449	Yes
285	MRPL40	17906	-7.977	-0.3408	Yes
286	ELP3	17913	-8.017	-0.3359	Yes
287	NUP54	17920	-8.056	-0.3309	Yes
288	NSUN2	17934	-8.142	-0.3262	Yes
289	GTF3C3	17968	-8.345	-0.3225	Yes
290	CDK8	17980	-8.427	-0.3175	Yes
291	TAF12	17992	-8.494	-0.3125	Yes
292	RUVBL1	18000	-8.540	-0.3073	Yes
293	IVNS1ABP	18004	-8.562	-0.3018	Yes
294	DDX21	18025	-8.681	-0.2971	Yes
295	MRPL10	18029	-8.693	-0.2916	Yes
296	COIL	18051	-8.851	-0.2869	Yes
297	RUVBL2	18063	-8.937	-0.2816	Yes
298	POLR2J	18064	-8.947	-0.2757	Yes
299	POP1	18075	-9.018	-0.2703	Yes
300	CYCS	18087	-9.108	-0.2648	Yes
301	GEMIN5	18098	-9.172	-0.2593	Yes
302	FUSIP1	18112	-9.292	-0.2539	Yes
303	LYAR	18132	-9.471	-0.2487	Yes
304	SUPV3L1	18172	-9.846	-0.2443	Yes
305	NOL5A	18188	-9.933	-0.2386	Yes
306	MPG	18198	-10.026	-0.2325	Yes
307	MRPS24	18199	-10.028	-0.2258	Yes
308	DDX47	18200	-10.038	-0.2192	Yes
309	RPP38	18207	-10.092	-0.2129	Yes
310	XRN2	18266	-10.538	-0.2091	Yes
311	MRPS35	18286	-10.769	-0.2030	Yes
312	GTF2H4	18336	-11.347	-0.1982	Yes
313	GNL3	18366	-11.758	-0.1920	Yes
314	NFS1	18370	-11.854	-0.1844	Yes
315	GEMIN6	18381	-12.028	-0.1770	Yes
316	MRPL12	18440	-12.794	-0.1717	Yes
317	SDAD1	18466	-13.263	-0.1643	Yes
318	MYBBP1A	18481	-13.474	-0.1562	Yes
319	WDHD1	18487	-13.605	-0.1474	Yes
320	POLR3H	18494	-13.702	-0.1387	Yes
321	MKI67IP	18495	-13.798	-0.1296	Yes
322	IKBKAP	18512	-14.428	-0.1210	Yes
323	ERCC8	18514	-14.575	-0.1114	Yes
324	MRPS10	18528	-15.055	-0.1022	Yes
325	NOL6	18545	-16.177	-0.0923	Yes
326	NOL1	18554	-16.693	-0.0818	Yes
327	RRP9	18558	-17.091	-0.0706	Yes
328	CIRH1A	18562	-17.292	-0.0594	Yes
329	NOLA2	18563	-17.292	-0.0480	Yes
330	POLR1E	18569	-17.856	-0.0364	Yes
331	CDKN2A	18616	-58.998	-0.0000	Yes